Ghent University Academic Bibliography

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Viewing the proteome : how to visualize proteomics data?

Eystein Oveland, Thilo Muth, Erdmann Rapp, Lennart Martens (UGent) , Frode S Berven and Harald Barsnes (UGent)

(2015) PROTEOMICS. 15(8). p.1341-1355
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PeptideShaker enables reanalysis of MS-derived proteomics data sets

Marc Vaudel, Julia M Burkhart, René P Zahedi, Eystein Oveland, Frode S Berven, Albert Sickmann, Lennart Martens (UGent) and Harald Barsnes (UGent)

(2015) NATURE BIOTECHNOLOGY. 33(1). p.22-24
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Shedding light on black boxes in protein identification

Marc Vaudel (UGent) , A Saskia Venne, Frode S Berven, René P Zahedi, Lennart Martens (UGent) and Harald Barsnes (UGent)

(2014) PROTEOMICS. 14(9). p.1001-1005
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Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory

Kenneth Verheggen (UGent) , Harald Barsnes and Lennart Martens (UGent)

(2014) PROTEOMICS. 14(4-5). p.367-377
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Machine learning applications in proteomics research: how the past can boost the future

Pieter Kelchtermans (UGent) , Wout Bittremieux, Kurt De Grave, Sven Degroeve (UGent) , Jan Ramon, Kris Laukens, Dirk Valkenborg, Harald Barsnes and Lennart Martens (UGent)

(2014) PROTEOMICS. 14(4-5). p.353-366
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DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra

Thilo Muth, Lisa Weilnböck, Erdmann Rapp, Christian G Huber, Lennart Martens (UGent) , Marc Vaudel and Harald Barsnes

(2014) JOURNAL OF PROTEOME RESEARCH. 13(2). p.1143-1146
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Crowdsourcing in proteomics: public resources lead to better experiments

Harald Barsnes and Lennart Martens (UGent)

(2013) AMINO ACIDS. 44(4). p.1129-1137
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Pride-asap: automatic fragment ion annotation of identified PRIDE spectra

Niels Hulstaert (UGent) , Florian Reisinger, Jonathan Rameseder, Harald Barsnes, Juan Antonio Vizcaíno and Lennart Martens (UGent)

(2013) JOURNAL OF PROTEOMICS. 95. p.89-92
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The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

Richard G Côté, Johannes Griss, José A Dianes, Rui Wang, James C Wright, Henk WP van den Toorn, Bas van Breukelen, Albert JR Heck, Niels Hulstaert (UGent) , Lennart Martens (UGent) , et al.

(2012) MOLECULAR & CELLULAR PROTEOMICS. 11(12). p.1682-1689
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A global analysis of peptide fragmentation variability

Harald Barsnes, Ingvar Eidhammer and Lennart Martens (UGent)

(2011) PROTEOMICS. 11(6). p.1181-1188

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Academic Bibliography

Viewing the proteome : how to visualize proteomics data?

PeptideShaker enables reanalysis of MS-derived proteomics data sets

Shedding light on black boxes in protein identification

Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory

Machine learning applications in proteomics research: how the past can boost the future

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra

Crowdsourcing in proteomics: public resources lead to better experiments

Pride-asap: automatic fragment ion annotation of identified PRIDE spectra

The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

A global analysis of peptide fragmentation variability

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