Ghent University Academic Bibliography

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Revisiting ancient whole-genome duplications in the seed and flowering plants through the lens of dosage-sensitive genes

Tao Shi and Yves Van de Peer (UGent)

(2026) SCIENCE ADVANCES. 12(1).
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Decoding the genome of Brainea insignis reveals insights into fern evolution and conservation

Zengqiang Xia, Lei Duan, Yuhan Fang, Yan Jiang, Hongfeng Chen, Yuehong Yan, Aihua Wang, Zixiang Li, Ziyue Liu, Guohua Zhao, et al.

(2026) NATURE COMMUNICATIONS. 17.
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Gapless pangenome analyses reveal fast Brassica rapa subspeciation

Wei Ma, Yuanming Liu, Xiaochun Wei, Xiaomeng Zhang, Xiaonan Li, Zhaokun Liu, Lingyun Yuan, Guangguang Li, Shu Zhang, Qihang Yang, et al.

(2026) SCIENCE. 391(6785).
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Simplified mechanical organs in aquatic plants are associated with the loss of expansin genes

Yue Zhang (UGent) , Yves Van de Peer (UGent) , Zhen Li (UGent) , Kathleen Marchal (UGent) and Jinming Chen

(2026) Plant Physiology. 200(3).
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Flavonoids and anthocyanins in seagrasses : implications for climate change adaptation and resilience

Jana Botes, Xiao Ma (UGent) , Jiyang Chang (UGent) , Yves Van de Peer (UGent) and Dave Kenneth Berger

(2025) FRONTIERS IN PLANT SCIENCE. 15.
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Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas Prost Boxoen (UGent) , Quinten Bafort (UGent) , Antoine Van de Vloet (UGent) , Fabricio De Almeida Silva (UGent) , Yunn Thet Paing (UGent) , Griet Casteleyn (UGent) , Sofie D'hondt (UGent) , Olivier De Clerck (UGent) and Yves Van de Peer (UGent)

(2025) NEW PHYTOLOGIST. 245(22). p.869-884
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doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).
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Novel adaptive immune systems in pristine Antarctic soils

Marc W. Van Goethem, Oliver K. I. Bezuidt, Rian Pierneef, Surendra Vikram, David W. Hopkins, Thomas Aspray, Grant Hall, Stephan Woodborne, Ian D. Hogg, Trent R. Northen, et al.

(2025) SCIENTIFIC REPORTS. 15(1).
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The subordinate role of pseudogenization to recombinative deletion following polyploidization in angiosperms

Ewout Crombez (UGent) , Yves Van de Peer (UGent) and Zhen Li (UGent)

(2025) NATURE COMMUNICATIONS. 16(1).
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Water lily pond : a multiomics database for water lilies

Chengjun Zhao, Ji Zhang, Yayu Chen, Lishuang Yang, Hongliang Chen, Yufan Liang, Wenquan Wang, Shuang He, Yunqing Luo, Junyu Zhang, et al.

(2025) HORTICULTURE RESEARCH. 12(6).

Academic Bibliography

Revisiting ancient whole-genome duplications in the seed and flowering plants through the lens of dosage-sensitive genes

Decoding the genome of Brainea insignis reveals insights into fern evolution and conservation

Gapless pangenome analyses reveal fast Brassica rapa subspeciation

Simplified mechanical organs in aquatic plants are associated with the loss of expansin genes

Flavonoids and anthocyanins in seagrasses : implications for climate change adaptation and resilience

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Novel adaptive immune systems in pristine Antarctic soils

The subordinate role of pseudogenization to recombinative deletion following polyploidization in angiosperms

Water lily pond : a multiomics database for water lilies

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