Ghent University Academic Bibliography

Journal Article
A1
open access

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Carolina de Carvalho Nunes (UGent) , Jasper Anckaert (UGent) , Fanny De Vloed (UGent) , Jolien De Wyn, Kaat Durinck (UGent) , Jo Vandesompele (UGent) , Franki Speleman (UGent) and Vanessa Vermeirssen (UGent)

(2024) PLOS ONE. 19(1).

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Nucleic acid degradation as barrier to gene delivery : a guide to understand and overcome nuclease activity

Heyang Zhang, Jo Vandesompele (UGent) , Kevin Braeckmans (UGent) , Stefaan De Smedt (UGent) and Katrien Remaut (UGent)

(2024) CHEMICAL SOCIETY REVIEWS. 53(1). p.317-360

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Journal Article
A1
open access

Benchmarking digital PCR partition classification methods with empirical and simulated duplex data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Wim Trypsteen (UGent) , David Gleerup (UGent) , Jo Vandesompele (UGent) , Antoon Lievens (UGent) , Matthijs Vynck (UGent) and Olivier Thas (UGent)

(2024) BRIEFINGS IN BIOINFORMATICS. 25(3).

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Journal Article
A1
open access

Nationwide quality assurance of high-throughput diagnostic molecular testing during the SARS-CoV-2 pandemic : role of the Belgian National Reference Centre

Reile Janssen, Lize Cuypers, Lies Laenen, Els Keyaerts, Kurt Beuselinck, Sunita Janssenswillen, Bram Slechten, Jannes Bode, Elke Wollants, Kristel Van Laethem, et al.

(2024) VIROLOGY JOURNAL. 21(1).

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Journal Article
A1
open access

Identification and validation of extracellular vesicle reference genes for the normalization of RT‐qPCR data

Cláudio Pinheiro (UGent) , Niké Guilbert (UGent) , Lien Lippens (UGent) , Quentin Roux (UGent) , Robin Boiy (UGent) , Suzanne Fischer (UGent) , Sofie Van Dorpe (UGent) , Bram De Craene (UGent) , Geert Berx (UGent) , Tom Boterberg (UGent) , et al.

(2024) JOURNAL OF EXTRACELLULAR VESICLES. 13(4).

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Journal Article
A1
open access

Subpar reporting of pre‐analytical variables in RNA‐focused blood plasma studies

Céleste Van Der Schueren (UGent) , Philippe Decruyenaere (UGent) , Francisco Avila Cobos (UGent) , Johanna Bult, Jill Deleu (UGent) , Lydia Dipalo, Hetty Helsmoortel (UGent) , Eva Hulstaert, Annelien Morlion (UGent) , Elena Ramos Varas (UGent) , et al.

(2024) MOLECULAR ONCOLOGY.

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Research Data

Blood plasma and FFPE derived total RNA seq dataset from DLBCL and PMBCL patients

Philippe Decruyenaere (UGent) , Jo Vandesompele (UGent) and Fritz Offner (UGent)

(2023)

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Pan-cancer blood plasma cell-free RNA profiles reveal cancer type and patient-specific changes

Annelien Morlion (UGent) , Philippe Decruyenaere (UGent) , Kathleen Schoofs (UGent) , Jasper Anckaert (UGent) , Justine Nuytens (UGent) , Eveline Vanden Eynde (UGent) , Kimberly Verniers (UGent) , Celine Everaert (UGent) , Fritz Offner (UGent) , Jo Van Dorpe (UGent) , et al.

(2023) Knowledge For Growth Conference 2023, Abstracts.

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Journal Article
A1
open access

Artifacts and biases of the reverse transcription reaction in RNA sequencing

Jasper Verwilt (UGent) , Pieter Mestdagh (UGent) and Jo Vandesompele (UGent)

(2023) RNA. 29(7). p.889-897

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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

Marieke Vromman (UGent) , Jasper Anckaert (UGent) , Stefania Bortoluzzi, Alessia Buratin, Chia-Ying Chen, Qinjie Chu, Trees-Juen Chuang, Roozbeh Dehghannasiri, Christoph Dieterich, Xin Dong, et al.

(2023) NATURE METHODS. 20(8). p.1159-1169

Academic Bibliography

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Nucleic acid degradation as barrier to gene delivery : a guide to understand and overcome nuclease activity

Benchmarking digital PCR partition classification methods with empirical and simulated duplex data

Nationwide quality assurance of high-throughput diagnostic molecular testing during the SARS-CoV-2 pandemic : role of the Belgian National Reference Centre

Identification and validation of extracellular vesicle reference genes for the normalization of RT‐qPCR data

Subpar reporting of pre‐analytical variables in RNA‐focused blood plasma studies

Blood plasma and FFPE derived total RNA seq dataset from DLBCL and PMBCL patients

Pan-cancer blood plasma cell-free RNA profiles reveal cancer type and patient-specific changes

Artifacts and biases of the reverse transcription reaction in RNA sequencing

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

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