Ghent University Academic Bibliography

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A novel panel of yeast assays for the assessment of thiamin and its biosynthetic intermediates in plant tissues

Simon Strobbe (UGent) , Jana Verstraete (UGent) , Teresa B. Fitzpatrick, Maria Faustino, Tiago F. Lourenço, M. Margarida Oliveira, Christophe Stove (UGent) and Dominique Van Der Straeten (UGent)

(2022) NEW PHYTOLOGIST.
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- PhD Thesis
Finding the metabolic sweet spot : exploring post-transcriptional regulation and pathway balancing in yeast

Yatti De Nijs (UGent)

(2022)
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Engineering of yeast glycoprotein expression

Charlot De Wachter (UGent) , Linde Van Landuyt (UGent) and Nico Callewaert (UGent)

(2021) ADVANCES IN BIOCHEMICAL ENGINEERING-BIOTECHNOLOGY. 175. p.93-135
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In situ product recovery of bio-based industrial platform chemicals : a guideline to solvent selection

Pieter De Brabander (UGent) , Evelien Uitterhaegen, Ellen Verhoeven (UGent) , Cedric Vander Cruyssen, Karel De Winter and Wim Soetaert (UGent)

(2021) FERMENTATION-BASEL. 7(1).
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The Flo adhesin family

Ronnie G. Willaert, Yeseren Kayacan (UGent) and Bart Devreese (UGent)

(2021) PATHOGENS. 10(11).
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Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models

Charlène Roussel, Kim De Paepe (UGent) , Wessam Galia, Jana De Bodt (UGent) , Sandrine Chalancon, Sylvain Denis, Francoise Leriche, Pascal Vandekerkove, Nathalie Ballet, Stephanie Blanquet-Diot, et al.

(2021) GUT MICROBES. 13(1).
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5′ untranslated regions : the next regulatory sequence in yeast synthetic biology

Yatti De Nijs (UGent) , Sofie De Maeseneire (UGent) and Wim Soetaert (UGent)

(2020) BIOLOGICAL REVIEWS. 95(2). p.517-529
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Dried yeast cell walls high in beta-glucan and mannan-oligosaccharides positively affect microbial composition and activity in the canine gastrointestinal tract in vitro

Pieter Van den Abbeele, Cindy Duysburgh, Maike Rakebrandt and Massimo Marzorati (UGent)

(2020) JOURNAL OF ANIMAL SCIENCE. 98(6).
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Three-dimensional visualization of APEX2-tagged Erg11 in Saccharomyces cerevisiae using Focused Ion Beam Scanning Electron Microscopy

Winnie Kerstens, Anna Kremer (UGent) , Michelle Holtappels, Peter Borghgraef (UGent) , Saskia Lippens (UGent) and Patrick Van Dijck

(2020) MSPHERE. 5(1).
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Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial populations

Cristina García Timermans (UGent) , Ruben Props (UGent) , Boris Zacchetti, Myrsini Sakarika (UGent) , Frank Delvigne and Nico Boon (UGent)

(2020) MSPHERE. 5(5).
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A study of different co-localization strategies for the production of flavonoids in Saccharomyces cerevisiae

Tom Delmulle (UGent)

(2019)
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The Crabtree effect shapes the Saccharomyces cerevisiae lag phase during the switch between different carbon sources

Gemma Perez-Samper, Bram Cerulus, Abbas Jariani, Lieselotte Vermeersch, Nuria Barrajon Simancas, Markus MM Bisschops, Joost van den Brink, Daniel Solis-Escalante, Brigida Gallone, Dries De Maeyer, et al.

(2018) MBIO. 9(5).
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Identification of novel genes involved in acetic acid tolerance of Saccharomyces cerevisiae using pooled-segregant RNA sequencing

Miguel Fernández-Niño, Sergio Pulido Tamayo (UGent) , Despina Stefanoska, Camilo Andrés Pérez Romero (UGent) , Daniel González-Ramos, Antonius JA van Maris, Kathleen Marchal (UGent) , Elke Nevoigt and Steve Swinnen

(2018) FEMS YEAST RESEARCH. 18(8).
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Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407

Charlène Roussel, A Sivignon, A de Vallee, G Garrait, S Denis, Varvara Tsilia (UGent) , N Ballet, P Vandekerckove, Tom Van de Wiele (UGent) , N Barnich, et al.

(2018) APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 102(14). p.6175-6189
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Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Thomas Decoene, Gert Peters (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2018) ACS SYNTHETIC BIOLOGY. 7(2). p.622-634
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Expanding the portfolio of synthetic biology tools in Saccharomyces cerevisiae for the optimization of heterologous production pathways at the transcriptional and translational level

Thomas Decoene

(2018)
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- C3
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Towards predictable 5’-UTRs in Saccharomyces cerevisiae

Thomas Decoene, Gert Peters (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2017) Synthetic Biology, 7th International meeting, Abstracts.
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A yeast fermentate improves gastrointestinal discomfort and constipation by modulation of the gut microbiome : results from a randomized double-blind placebo-controlled pilot trial

Iris Pinheiro, Larry Robinson, An Verhelst, Massimo Marzorati (UGent) , Björn Winkens, Pieter van den Abbeele and Sam Possemiers

(2017) BMC COMPLEMENTARY AND ALTERNATIVE MEDICINE. 17.
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Engineering transcription in S. cerevisiae through random assembly of an UAS library

Thomas Decoene, Nathalie Cuypers, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2016) Genome Engineering and Synthetic Biology: Tools and Technologies, Program book.
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An orthogonal transcription system for Saccharomyces cerevisiae

Maarten De Mol (UGent) , Veerle De Clercq (UGent) , Sofie De Maeseneire (UGent) , Joeri Beauprez and Wim Soetaert (UGent)

(2016) Applied Synthetic Biology in Europe, 3rd Meeting, Abstracts.
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Protein expression modulation in S. cerevisiae through random assembly of an UAS library

Thomas Decoene, Nathalie Cuypers, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2016) Yeasterday, Abstracts.
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Engineering eukaryotic transcription in yeast: towards the minimal core promoter

Thomas Decoene, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2015) Enabling Technologies for Eukaryotic Synthetic Biology, Symposium abstracts.
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Engineering yeast for producing human glycoproteins : where are we now?

Bram Laukens, Charlotte De Visscher (UGent) and Nico Callewaert (UGent)

(2015) FUTURE MICROBIOLOGY. 10(1). p.21-34
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Directional multipart in vivo assembly and genome integration using Saccharomyces cerevisiae

Maarten De Mol (UGent) , Sofie De Maeseneire (UGent) , Joeri Beauprez and Wim Soetaert (UGent)

(2015) Enabling Technologies for Eukaryotic Synthetic Biology, Symposium abstracts.
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Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas Decoene, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2014) Yeasterday, Abstracts.
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Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas Decoene, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2014) Ghent BioBased Economy Summer School, Abstracts.
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A balancing act: building the aurone pathway in Saccharomyces cerevisiae

Thomas Decoene, Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2014) Industrial Biotechnology and the Biobased Economy, 5th CINBIOS Forum, Abstracts.
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Comparative analysis of CYP93E proteins for improved microbial synthesis of plant triterpenoids

Tessa Moses (UGent) , Johan M Thevelein, Alain Goossens (UGent) and Jacob Pollier (UGent)

(2014) PHYTOCHEMISTRY. 108. p.47-56
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Cell mass and cell cycle dynamics of an asynchronous budding yeast population: experimental observations, flow cytometry data analysis, and multi-scale modeling

Rita Lencastre Fernandes, Magnus Carlquist, Luisa Lundin, Anna-Lena Heins, Abhishek Dutta (UGent) , Søren J Sørensen, Anker D Jensen, Ingmar Nopens (UGent) , Anna Eliasson Lantz and Krist V Gernaey

(2013) BIOTECHNOLOGY AND BIOENGINEERING. 110(3). p.812-826
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A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

Rudy GE Van Eijsden, Catherine Stassen, Luk Daenen, Sebastiaan E Van Mulders, Prashant M Bapat, Verena Siewers, Katty VY Goossens, Jens Nielsen, Freddy R Delvaux, Paul Van Hummelen, et al.

(2013) BIOTECHNOLOGY LETTERS. 35(6). p.891-900
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A MultiSite Gateway™ vector set for the functional analysis of genes in the model Saccharomyces cerevisiae

Astrid Nagels Durand (UGent) , Tessa Moses (UGent) , Rebecca De Clercq (UGent) , Alain Goossens (UGent) and Laurens Pauwels (UGent)

(2012) BMC MOLECULAR BIOLOGY. 13.
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The influence of microgravity on invasive growth in Saccharomyces cerevisiae

Sebastiaan E Van Mulders, Catherine Stassen, Luk Daenen, Bart Devreese (UGent) , Verena Siewers, Rudy GE van Eijsden, Jens Nielsen, Freddy R Delvaux and Ronnie Willaert

(2011) ASTROBIOLOGY. 11(1). p.45-55
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Identification of a novel autoantigen in inflammatory bowel disease by protein microarray

N Vermeulen, KO de Beeck, S Vermeire, Kristel Van Steen (UGent) , G Michiels, V Ballet, P Rutgeerts and X Bossuyt

(2011) INFLAMMATORY BOWEL DISEASES. 17(6). p.1291-1300
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Membrane permeabilization and cellular death of Escherichia coli, Listeria monocytogenes and Saccharomyces cerevisiae as induced by high pressure carbon dioxide treatment

Linsey Garcia-Gonzalez (UGent) , AH Geeraerd, J Mast, Yves Briers (UGent) , K Elst, L Van Ginneken, JF Van Impe and Frank Devlieghere (UGent)

(2010) FOOD MICROBIOLOGY. 27(4). p.541-549
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A nonlinear mixed-effects model for estimating calibration intervals for unknown concentrations in two-color microarray data with spike-ins

Pushpike J Thilakarathne, Geert Verbeke, Kristof Engelen and Kathleen Marchal (UGent)

(2009) STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY. 8(1).
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The protective effect against Vibrio campbellii in Artemia nauplii by pure beta-glucan and isogenic yeast cells differing in beta-glucan and chitin content operated with a source-dependent time lag

Siyavash Soltanian, Troung Quoc Thai, Jean Dhont (UGent) , Patrick Sorgeloos (UGent) and Peter Bossier (UGent)

(2007) FISH & SHELLFISH IMMUNOLOGY. 23(5). p.1003-1014
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Role of oxidative phosphorylation in histatin 5-induced cell death in Saccharomyces cerevisiae

Kris De Smet, Rieka Reekmans (UGent) and Roland Contreras (UGent)

(2004) BIOTECHNOLOGY LETTERS. 26(23). p.1781-1785
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Constitutive flocculation in Saccharomyces cerevisiae through overexpression of the GTS1 gene, coding for a 'Glo'-type Zn-finger-containing protein

Peter Bossier (UGent) , Peter Goethals (UGent) and Claudina Rodrigues-Pousada

(1997) YEAST. 13(8). p.717-725

A novel panel of yeast assays for the assessment of thiamin and its biosynthetic intermediates in plant tissues

Finding the metabolic sweet spot : exploring post-transcriptional regulation and pathway balancing in yeast

Engineering of yeast glycoprotein expression

In situ product recovery of bio-based industrial platform chemicals : a guideline to solvent selection

The Flo adhesin family

Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models

5′ untranslated regions : the next regulatory sequence in yeast synthetic biology

Dried yeast cell walls high in beta-glucan and mannan-oligosaccharides positively affect microbial composition and activity in the canine gastrointestinal tract in vitro

Three-dimensional visualization of APEX2-tagged Erg11 in Saccharomyces cerevisiae using Focused Ion Beam Scanning Electron Microscopy

Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial populations

A study of different co-localization strategies for the production of flavonoids in Saccharomyces cerevisiae

The Crabtree effect shapes the Saccharomyces cerevisiae lag phase during the switch between different carbon sources

Identification of novel genes involved in acetic acid tolerance of Saccharomyces cerevisiae using pooled-segregant RNA sequencing

Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407

Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Expanding the portfolio of synthetic biology tools in Saccharomyces cerevisiae for the optimization of heterologous production pathways at the transcriptional and translational level

Towards predictable 5’-UTRs in Saccharomyces cerevisiae

A yeast fermentate improves gastrointestinal discomfort and constipation by modulation of the gut microbiome : results from a randomized double-blind placebo-controlled pilot trial

Engineering transcription in S. cerevisiae through random assembly of an UAS library

An orthogonal transcription system for Saccharomyces cerevisiae

Protein expression modulation in S. cerevisiae through random assembly of an UAS library

Engineering eukaryotic transcription in yeast: towards the minimal core promoter

Engineering yeast for producing human glycoproteins : where are we now?

Directional multipart in vivo assembly and genome integration using Saccharomyces cerevisiae

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

A balancing act: building the aurone pathway in Saccharomyces cerevisiae

Comparative analysis of CYP93E proteins for improved microbial synthesis of plant triterpenoids

Cell mass and cell cycle dynamics of an asynchronous budding yeast population: experimental observations, flow cytometry data analysis, and multi-scale modeling

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

A MultiSite Gateway™ vector set for the functional analysis of genes in the model Saccharomyces cerevisiae

The influence of microgravity on invasive growth in Saccharomyces cerevisiae

Identification of a novel autoantigen in inflammatory bowel disease by protein microarray

Membrane permeabilization and cellular death of Escherichia coli, Listeria monocytogenes and Saccharomyces cerevisiae as induced by high pressure carbon dioxide treatment

A nonlinear mixed-effects model for estimating calibration intervals for unknown concentrations in two-color microarray data with spike-ins

The protective effect against Vibrio campbellii in Artemia nauplii by pure beta-glucan and isogenic yeast cells differing in beta-glucan and chitin content operated with a source-dependent time lag

Role of oxidative phosphorylation in histatin 5-induced cell death in Saccharomyces cerevisiae

Constitutive flocculation in Saccharomyces cerevisiae through overexpression of the GTS1 gene, coding for a 'Glo'-type Zn-finger-containing protein