Ghent University Academic Bibliography

Flow cytometry as a rapid tool for quality control of microbial self-healing agents

Yusuf Çagatay Erşan, Kevin Sabbe (UGent) , Beyza Kardoğan and Nico Boon (UGent)

(2026) JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING. 14(1).

Novel thiol-norbornene gelatin–elastin bioink with porogen-enhanced porosity for microvascular self-organization in bioprinted tissues

Florian Vanlauwe (UGent) , Thaïs De Witte (UGent) , Sabina Shamieva (UGent) , Charlotte Dermaux (UGent) , Alexandra Cleyman (UGent) , Sandra Van Vlierberghe (UGent) and Phillip Blondeel (UGent)

(2026) BIOFABRICATION. 18(1).

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STAT1 drives the immune landscape of murine Toll-like receptor 9-induced liver inflammation

Amber De Visscher, Jarne Belien, Eline Bernaerts, Marte Vandeput, Bert Malengier-Devlies, Fran Prenen, Hanne Meers, Liliana Sokol, Tania Mitera, Nele Berghmans, et al.

(2026) JHEP REPORTS. 8(2).

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Intranasal exposure to commensal bacterium Rothia mucilaginosa protects against influenza A virus infection

Ana Raquel Maia, Loïc Gonzalez, Badreddine Bounab, Lucia Grassi (UGent) , Coralie Mousset, Gaëlle Fromont-Hankard, Adeline Cezard, Pieter Hiemstra, Thomas Baranek, Christophe Paget, et al.

(2025) ANTIVIRAL RESEARCH. 234.

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Changes to the autophagy-related muscle proteome following short-term treatment with ectoine in the Duchenne muscular dystrophy mouse model mdx

Eulàlia Gómez Armengol, Caroline Merckx, Hanne De Sutter, Jan De Bleecker (UGent) and Boel De Paepe (UGent)

(2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 26(2).

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ELLIPSIS : robust quantification of splicing in scRNA-seq

Marie Van Hecke (UGent) , Niko Beerenwinkel, Thibault Lootens (UGent) , Jan Fostier (UGent) , Robrecht Raedt (UGent) and Kathleen Marchal (UGent)

(2025) BIOINFORMATICS. 41(2).

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Cellular deconstruction of the human skeletal muscle microenvironment identifies an exercise-induced histaminergic crosstalk

Thibaux Van der Stede (UGent) , Alexia Van de Loock (UGent) , Guillermo Turiel, Camilla Hansen, Andrea Tamariz-Ellemann, Max Ullrich (UGent) , Eline Lievens (UGent) , Jan Spaas, Nurten Yigit (UGent) , Jasper Anckaert (UGent) , et al.

(2025) CELL METABOLISM. 37(4). p.842-856.e7

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Autogene cevumeran with or without atezolizumab in advanced solid tumors : a phase 1 trial

Juanita Lopez, Thomas Powles, Fadi Braiteh, Lillian L. Siu, Patricia LoRusso, Claire F. Friedman, Ani S. Balmanoukian, Michael Gordon, Jeffrey Yachnin, Sylvie Rottey (UGent) , et al.

(2025) NATURE MEDICINE. 31(1). p.152-164

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Predicting image quality degradation as a result of two-phase sample transport in LA-ICP-TOFMS mapping of carbon-based materials

Johannes T. van Elteren, Tom Van Helden (UGent) , Dino Metarapi, Thibaut Van Acker (UGent) , Kristina Mervič, Martin Šala and Frank Vanhaecke (UGent)

(2025) JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY. 40(2). p.520-528

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Degradation of gaseous hydrocarbons in aerated stirred bioreactors inoculated with Rhodococcus erythropolis : effect of the carbon source and SIFT-MS method development

Paula Alejandra Lamprea Pineda (UGent) , Kristof Demeestere (UGent) , Allan Augusto Alvarado Alvarado, Frank Devlieghere (UGent) , Nico Boon (UGent) , Herman Van Langenhove (UGent) and Christophe Walgraeve (UGent)

(2025) JOURNAL OF ENVIRONMENTAL SCIENCES. 147. p.268-281

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Pseudorabies virus infection triggers pUL46-mediated phosphorylation of connexin-43 and closure of gap junctions to promote intercellular virus spread

Alexander Tishchenko Khoruzh (UGent) , Nicolás Romero Rata, Cliff Van Waesberghe (UGent) , Jonas Delva (UGent) , Oliver Vickman, Gregory A. Smith, Thomas C. Mettenleiter, Walter Fuchs, Barbara G. Klupp and Herman Favoreel (UGent)

(2025) PLOS PATHOGENS. 21(1).

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Establishing a co-culture aggregate of N-cycle bacteria to elucidate flocculation in biological wastewater treatment

Laurens Parret, Kenneth Simoens, Benjamin Horemans, Jo De Vrieze (UGent) and Ilse Smets

(2025) APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 109(1).

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Uremic toxins levels are associated with miR-223 in chronic kidney disease-associated anemia

Emma Brisot, Pierre-Marie Lepretre, Eya Hamza, Ophelie Fourdinier, Benjamin Brigant, Hakim Ouled-Haddou, Gabriel Choukroun, Ziad A. Massy, Francis Verbeke (UGent) , Valerie Metzinger-Le Meuth, et al.

(2025) NON-CODING RNA RESEARCH. 13. p.121-130

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Epigenomic preconditioning of peripheral monocytes determines their transcriptional response to the tumor microenvironment.

Máté Kiss, Laszlo Halasz, Eva Hadadi, Wilhelm K. Berger, Petros Tzerpos, Szilard Poliska, Daliya Kancheva, Aurélie Gabriel, Romina Mora Barthelmess, Ayla Debraekeleer, et al.

(2025) GENOME MEDICINE. 17(1).

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Engineering of extracellular vesicles for efficient intracellular delivery of multimodal therapeutics including genome editors

Xiuming Liang, Dhanu Gupta, Junhua Xie, Elien Van Wonterghem (UGent) , Lien Van Hoecke (UGent) , Justin Hean, Zheyu Niu, Marziyeh Ghaeidamini, Oscar P. B. Wiklander, Wenyi Zheng, et al.

(2025) NATURE COMMUNICATIONS. 16(1).

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Origin and development of uniparental and polyploid blastomeres

Yan Zhao, Andrea Fernández Montoro (UGent) , Greet Peeters, Tatjana Jatsenko, Tine De Coster (UGent) , Daniel Angel Velez (UGent) , Thomas Lefevre, Thierry Voet, Olga Tsuiko, Ants Kurg, et al.

(2025) ISCIENCE. 28(5).

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Continuous FACS sorting of double emulsion picoreactors with a 3D-printed vertical mixer

Zijian Yang, Samuel Thompson, Yanrong Zhang, Iene Rutten, Julie Van Duyse (UGent) , Gert Van Isterdael (UGent) , Lisa Nichols, Jeroen Lammertyn, Hyongsok T. Soh and Polly Fordyce

(2025) ANALYTICAL CHEMISTRY. 97(27). p.14406-14414

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Machine learning with label-free Raman microscopy to investigate ferroptosis in comparison with apoptosis and necroptosis

Joost Verduijn, Eva Degroote (UGent) and Andre Skirtach (UGent)

(2025) COMMUNICATIONS BIOLOGY. 8(1).

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CREB regulates Foxp3+ST-2+ TREGS with enhanced IL-10 production

Sudheendra Hebbar Subramanyam, Judit Turyne Hriczko, Saskia Schulz, Thomas Look, Tannaz Goodarzi, Tim Clarner, Miriam Scheld, Markus Kipp, Eva Verjans, Svenja Boell, et al.

(2025) FRONTIERS IN IMMUNOLOGY. 16.

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Glucose deprivation‐induced disulfidptosis via the SLC7A11‐INF2 axis : pan‐cancer prognostic exploration and therapeutic validation

Zhenyu Song, Qiuming Yao, Lina Huang, Dan Cui, Jun Xie, Leilei Wu, Jianfeng Huang, Bo Zhai, Dan Liu and Xiao Xu (UGent)

(2025) ADVANCED SCIENCE.

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Offshore hydrogen production via the PEM electrolyser coupled with the reverse osmosis system

Siavash Asiaban (UGent) , Dimitar Bozalakov (UGent) , Emile Cornelissen (UGent) and Lieven Vandevelde (UGent)

(2025) IEEE ACCESS. 13. p.161685-161708

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A phase 1 dose‐escalation study of LY3295668 erbumine as monotherapy and in combination with topotecan and cyclophosphamide in children with relapsed/refractory neuroblastoma

Steven G. DuBois, Chitose Ogawa, Lucas Moreno, Yaël P. Mossé, Matthias Fischer, Anne L. Ryan, Kieuhoa T. Vo, Bram De Wilde (UGent) , Alba Rubio‐San‐Simon, Margaret E. Macy, et al.

(2025) CANCER. 131(4).

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mRNA galsomes vaccine protects budgerigars against virulent Chlamydia psittaci challenge

Anne De Meyst (UGent) , Joeri Van Mieghem, Koen Chiers (UGent) , Koen Raemdonck (UGent) , Rein Verbeke (UGent) , Ine Lentacker (UGent) and Daisy Vanrompay (UGent)

(2025) VACCINES. 13(2).

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Timing of cambial phenology of rainforest trees as indicator of climate sensitivity of the Congo Basin biome

Basile Luse Belanganayi, Christophe Mbungu Phaka, Brice Yannick Djiofack, Félix Laurent (UGent) , Kévin Liévens, Nestor Luambua Kashikija (UGent) , Trésor Bolaya, Nils Bourland, Wannes Hubau (UGent) , Hans Beeckman, et al.

(2025) GLOBAL ECOLOGY AND CONSERVATION. 62.

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Uptake and nuclear translocation of lactoferrin by porcine monocytes : impact of iron binding, protease activity, and monocyte activation

Ruben Ongena (UGent) , Daisy Vanrompay (UGent) , Eric Cox (UGent) and Bert Devriendt (UGent)

(2025) BIOMETALS. 38(6). p.1973-1989

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Second-generation AURKA-targeting PROTACs : structural optimization toward in vivo degradation in neuroblastoma

Simon Krols (UGent) , Muhammad Rishfi (UGent) , Fien Martens (UGent) , Anouk Van Hauwermeiren (UGent) , Ellen Sanders (UGent) , Pieter-Jan De Sutter (UGent) , An Vermeulen (UGent) , Kaat De Wever (UGent) , Sarah-Lee Bekaert (UGent) , M. Emmy M. Dolman, et al.

(2025) JOURNAL OF MEDICINAL CHEMISTRY. 68(22). p.23962-23976

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Loss of the ubiquitin-associated domain of sqstm1/p62 in zebrafish causes a phenotype resembling Paget’s disease of bone

Yentl Huybrechts, Raphaël De Ridder, Dylan Bergen, Björn De Samber, Eveline Boudin, Francesca Tonelli, Dries Knapen, Lucia Vergauwen, Dorien Schepers, Evelien Van Dijck, et al.

(2025) CALCIFIED TISSUE INTERNATIONAL. 116(1).

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Inter-organ crosstalk : the kidney's role in systemic health and disease

Carmine Zoccali, Rajiv Agarwal, Francesca Mallamaci, Kitty J. Jager, Vianda Stel, Mehmet Kanbay, Carol Pollock, Kamyar Kalantar-Zadeh, Claudio Ronco and Raymond Vanholder (UGent)

(2025) JOURNAL OF INTERNAL MEDICINE. 298(5). p.368-391

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Tunable electrokinetic motion of charged nanoparticles in an aqueous solution using interdigitated microelectrodes

Farshad Rezakhanloo (UGent) , Yera Ussembayev (UGent) , Mohammadreza Bahrami (UGent) , Filip Beunis (UGent) , Kevin Braeckmans (UGent) , Ilia Goemaere (UGent) , Deep Punj (UGent) , Amin Ahmad (UGent) , Louis Van der Meeren (UGent) and Kristiaan Neyts (UGent)

(2025) NANOMATERIALS. 15(20).

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Impedance flow cytometry for rapid quality assessment of protoplast cultures

Tiago Monteiro Rodrigues (UGent) , Robin Lardon (UGent) , Mária Braun Šimášková (UGent) , Hilde Van Houtte, Shivegowda Thammannagowda, Grit Schade, Steffen Vanneste (UGent) and Danny Geelen (UGent)

(2025) PLANT METHODS. 21(1).

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Gut microbiota modulates CNS barrier function in murine model for multiple sclerosis

Junhua Xie, Marlies Burgelman (UGent) , Pieter Dujardin (UGent) , Jonas Castelein (UGent) , Griet Van Imschoot (UGent) , Elien Van Wonterghem (UGent) , Hannah Lernout (UGent) , Sjoerd Schetters (UGent) , Charysse Vandendriessche (UGent) , Lien Van Hoecke (UGent) , et al.

(2025) FLUIDS AND BARRIERS OF THE CNS. 22(1).

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Impact of pre-existing anti-replicase immunity on the efficacy of self-amplifying mRNA vaccines

Xiaole Cui (UGent) , Laura Amelinck (UGent) , Oriane Gillon (UGent) , João Paulo Portela Catani, Ya Gao (UGent) , Qing Sun (UGent) , Elisabeth De Sutter (UGent) , Pieter Vervaeke (UGent) , Janne Snoeck (UGent) , Stefan Lienenklaus, et al.

(2025) NATURE COMMUNICATIONS. 17(1).

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Inhibiting peripheral serotonin activates liver AMPK and reduces monocyte-derived macrophages and fibrosis

Battsetseg Batchuluun, Tinne Thoné (UGent) , Andre Djalalvandi, Russta Fayyazi, Parneet Deo, Julian M. Yabut, Sara Maggiore (UGent) , Bavo Vanneste (UGent) , Jaya Gautam, Logan K. Townsend, et al.

(2025) CELL REPORTS. 44(12).

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Rewinding the clock : emerging pharmacological strategies for human anti-aging therapy

Charlotte Delrue (UGent) , Reinhart Speeckaert (UGent) and Marijn Speeckaert (UGent)

(2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 26(19).

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Recreating chronic respiratory infections in vitro using physiologically relevant models.

Lucia Grassi (UGent) and Aurélie Crabbé (UGent)

(2024) EUROPEAN RESPIRATORY REVIEW. 33(173).

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Dual neutrophil subsets exacerbate or suppress inflammation in tuberculosis via IL-1β or PD-L1

Emilie Doz-Deblauwe, Badreddine Bounab, Florence Carreras, Julia S Fahel, Sergio C Oliveira, Mohamed Lamkanfi (UGent) , Yves Le Vern, Pierre Germon, Julien Pichon, Florent Kempf, et al.

(2024) LIFE SCIENCE ALLIANCE. 7(7).

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Improvement of antioxidant capability by dietary N-acetyl cysteine supplementation alleviates bone loss induced by chronic heat stress in finisher broilers

Huaiyong Zhang (UGent) , Herinda Pertiwi (UGent) , Joris Michiels (UGent) , Djoere Gaublomme (UGent) , Maryam Majdeddin (UGent) , Yuhuang Hou (UGent) , Matthieu Boone (UGent) , Dirk Elewaut (UGent) , Iván Josipovic (UGent) and Jeroen Degroote (UGent)

(2024) JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY. 15(1).

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Molecular basis for the different PCV2 susceptibility of T-lymphoblasts in Landrace and Piétrain pigs

Yueling Ouyang and Hans Nauwynck (UGent)

(2024) VETERINARY RESEARCH. 55(1).

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Multicompartment polyion complex micelles based on triblock polypept(o)ides mediate efficient siRNA delivery to cancer‐associated fibroblasts for antistromal therapy of hepatocellular carcinoma

Paul Schneider, Heyang Zhang, Leon Simic, Zhuqing Dai, Barbara Schrörs, Özlem Akilli‐Öztürk, Jian Lin, Feyza Durak, Jenny Schunke, Vanessa Bolduan, et al.

(2024) ADVANCED MATERIALS. 36(41).

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Miscellaneous
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Carolin Seyfferth (UGent) , Thomas Eekhout (UGent) , Dongbo Shi, Manuel Neumann, Lea S. Berg, Yuji Ke (UGent) , Rachel Shahan, Kevin L. Cox Jr, Fabio Gomez-Cano, Hilde Nelissen (UGent) , et al.

(2024) PLANT CELL. 36(4). p.812-828

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Diet composition drives tissue-specific intensity of murine enteric infections

Helene Israelson, Amalie Vedsted-Jakobsen, Ling Zhu, Aurélie Gagnaire (UGent) , Alexandra von Muenchow, Nina Polakovicova, Angela H. Valente, Ali Raza, Audrey I. S. Andersen-Civil, John E. Olsen, et al.

(2024) MBIO. 15(2).

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SARS-CoV-2 brainstem encephalitis in human inherited DBR1 deficiency

Yi-Hao Chan, Vanja Lundberg, Jérémie Le Pen, Jiayi Yuan, Danyel Lee, Francesca Pinci, Stefano Volpi, Koji Nakajima, Vincent Bondet, Sanna Åkesson, et al.

(2024) JOURNAL OF EXPERIMENTAL MEDICINE. 221(9).

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The added value of automated HPC count : detecting clinically important interferences on the flow cytometric CD34+cell count

Alice Brochier (UGent) , Mattias Hofmans (UGent) , Stijn Lambrecht (UGent) , Pauline Breughe (UGent) , Barbara Denys (UGent) , Sander De Bruyne, Malicorne Buysse (UGent) , Anna Vantilborgh (UGent) and Carolien Bonroy (UGent)

(2024) CLINICAL CHEMISTRY AND LABORATORY MEDICINE. 62(7). p.e160-e163

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Chlamydia psittaci infected cell studies by 4Pi Raman and atomic force microscopy

Dmitry Khalenkow, Alejandro Diaz Tormo, Anne De Meyst (UGent) , Louis Van der Meeren (UGent) , Joost Verduijn, Joanna Rybarczyk (UGent) , Daisy Vanrompay (UGent) , Nicolas Le Thomas (UGent) and Andre Skirtach (UGent)

(2024) MICROSCOPY. 73(4). p.335-342

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Actinobacteria as promising biocontrol agents for in vitro and in planta degradation and detoxification of Zearalenone

Larissa De Troyer (UGent) , Noémie De Zutter (UGent) , Sarah De Saeger (UGent) , Frédéric Dumoulin (UGent) , Siska Croubels (UGent) , Siegrid De Baere (UGent) , Leen De Gelder (UGent) and Kris Audenaert (UGent)

(2024) TOXINS. 16(6).

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Influence of slope, material, and temperature on Listeria monocytogenes and Pseudomonas aeruginosa mono- and dual-species biofilms

Tessa Tuytschaever (UGent) , Christine Faille, Katleen Raes (UGent) and Imca Sampers (UGent)

(2024) BIOFOULING. 40(8). p.467-482

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Phase I PIANO trial—PIPAC-oxaliplatin and systemic nivolumab combination for gastric cancer peritoneal metastases : clinical and translational outcomes

R. Sundar, D.K.A. Chia, J.J. Zhao, A.R.Y.B. Lee, G. Kim, H.L. Tan, A. Pang, A. Shabbir, Wouter Willaert (UGent) , H. Ma, et al.

(2024) ESMO OPEN. 9(9).

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Repeated COVID-19 mRNA-based vaccination contributes to SARS-CoV-2 neutralizing antibody responses in the mucosa

Jozefien Declercq (UGent) , Sarah Gerlo (UGent) , Sharon Van Nevel, Natalie De Ruyck (UGent) , Gabriële Holtappels (UGent) , Liesbeth Delesie (UGent) , Els Tobback (UGent) , Inés Lammens (UGent) , Nikita Gerebtsov (UGent) , Koen Sedeyn (UGent) , et al.

(2024) SCIENCE TRANSLATIONAL MEDICINE. 16(770).

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The formation of stable lung tumor spheroids during random positioning involves increased estrogen sensitivity

Balkis Barkia, Viviann Sandt, Daniela Melnik, José Luis Cortés-Sánchez, Shannon Marchal, Bjorn Baselet, Sarah Baatout (UGent) , Jayashree Sahana, Daniela Grimm, Markus Wehland, et al.

(2024) BIOMOLECULES. 14(10).

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AXL-specific single domain antibodies show diagnostic potential and anti-tumor activity in acute myeloid leukemia

Niels Vandewalle, Hatice Satilmis, Emma Verheye, Rong Fan, Yanmeng Wang, Timo W. M. De Groof, Jessica Bridoux, Tessa Kerre (UGent) , Nathan De Beule, Ann De Becker, et al.

(2024) THERANOSTICS. 14(7). p.2656-2674