Ghent University Academic Bibliography

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Reflective multi-immersion microscope objectives inspired by the Schmidt telescope

Fabian F. Voigt, Anna Maria Reuss, Thomas Naert, Sven Hildebrand, Martina Schaettin, Adriana L. Hotz, Lachlan Whitehead, Armin Bahl, Stephan C. F. Neuhauss, Alard Roebroeck, et al.

(2023) NATURE BIOTECHNOLOGY.
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Clustered regularly interspaced short palindromic repeats tools for plant metabolic engineering : achievements and perspectives

Sara Selma Garcia (UGent) , Evi Ceulemans (UGent) , Alain Goossens (UGent) and Elia Lacchini (UGent)

(2023) CURRENT OPINION IN BIOTECHNOLOGY. 79.
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Personalized statistical modeling of soft tissue structures in the knee

Aline Van Oevelen (UGent) , Kate Duquesne (UGent) , Matthias Peiffer (UGent) , Jonas Grammens, Arthur Burssens, Amélie Chevalier (UGent) , G. Steenackers, Jan Victor (UGent) and Emmanuel Audenaert (UGent)

(2023) FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY. 11.
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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys (UGent) , Peter Merseburger (UGent) , Jasper Staut (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2023) BMC GENOMICS. 24.
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European consumer and societal stakeholders' response to crop improvements and new plant breeding techniques

Abhishek Nair, Arnout R. H. Fischer, Silvana Moscatelli, Carmen Socaciu, Christian Kohl, Stacia S. Stetkiewicz, Jonathan Menary, Alexandra Baekelandt (UGent) , Amrit K. Nanda, Petra Jorasch, et al.

(2023) FOOD AND ENERGY SECURITY. 12.
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Principles of antibodies with ultralong complementarity-determining regions and picobodies

Marcel Fridolin Passon (UGent) , Stefaan De Smedt (UGent) and Hristo Svilenov (UGent)

(2023) BIOTECHNOLOGY ADVANCES. 64.
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Challenges and progress towards industrial recombinant protein production in yeasts : a review

Pieter De Brabander (UGent) , Evelien Uitterhaegen, Tom Delmulle (UGent) , Karel De Winter and Wim Soetaert (UGent)

(2023) BIOTECHNOLOGY ADVANCES. 64.
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Public acceptance and stakeholder views of gene edited foods : a global overview

Simon Strobbe (UGent) , Joshua Wesana (UGent) , Dominique Van Der Straeten (UGent) and Hans De Steur (UGent)

(2023) TRENDS IN BIOTECHNOLOGY.
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How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques

Negin Harandi (UGent) , Breght Vandenberghe (UGent) , Joris Vankerschaver (UGent) , Stephen Depuydt (UGent) and Arnout Van Messem (UGent)

(2023) Plant Methods. 19(1).
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Fine‐tuning the endcap chemistry of acrylated poly(ethylene glycol)‐based hydrogels for efficient burn wound exudate management

Manon Minsart (UGent) , Nicolas Deroose (UGent) , Laurens Parmentier (UGent) , Sandra Van Vlierberghe (UGent) , Arn Mignon and Peter Dubruel (UGent)

(2023) MACROMOLECULAR BIOSCIENCE. 23(3).
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Improved node and arc multiplicity estimation in de Bruijn graphs using approximate inference in conditional random fields

Aranka Steyaert (UGent) , P. Audenaert (UGent) and Jan Fostier (UGent)

(2023) IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS. 20(3). p.1995-2006
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- Miscellaneous
Metal nanocatalyst sintering interrogated at complementary length scales (Small 5/2023)

Eduardo Solano, Jolien Dendooven (UGent) , Davy Deduytsche (UGent) , Nithin Poonkottil (UGent) , Ji-Yu Feng, Maarten B. J. Roeffaers, Christophe Detavernier (UGent) and Matthias Filez (UGent)

(2023) SMALL. 19(5).
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We need to talk about disruption in bioethics : a commentary on Rueda, Pugh and Savulescu

Michiel De Proost (UGent) and Seppe Segers (UGent)

(2023) TRENDS IN BIOTECHNOLOGY. 41(6). p.741-742
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Chiral photonic micromotors : uni‐ and bidirectional rotation and speed control in chiral photonic micromotors powered by light (Small 20/2023)

Yera Ussembayev (UGent) , Noah De Witte, Xiaohong Liu, Alberto Belmonte, Tom Bus, Sjoukje Lubach, Filip Beunis (UGent) , Filip Strubbe (UGent) , Albert P. H. J. Schenning and Kristiaan Neyts (UGent)

(2023) SMALL. 19(20).
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How woodcocks produce the most brilliant white plumage patches among the birds

Jamie Dunning, Anvay Patil, Liliana D'Alba Altamirano (UGent) , Alexander L. Bond, Gerben Debruyn (UGent) , Ali Dhinojwala, Matthew Shawkey (UGent) and Lukas Jenni

(2023) JOURNAL OF THE ROYAL SOCIETY INTERFACE. 20(200).
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Functional synthetic biology

Ibrahim Aldulijan, Jacob Beal, Sonja Billerbeck, Jeff Bouffard, Gaël Chambonnier, Nikolaos Ntelkis (UGent) , Isaac Guerreiro, Martin Holub, Paul Ross, Vinoo Selvarajah, et al.

(2023) SYNTHETIC BIOLOGY. 8(1).
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Exploring the charge storage dynamics in donor–acceptor covalent organic frameworks based supercapacitors by employing ionic liquid electrolyte

Amrita Chatterjee (UGent) , Jiamin Sun (UGent) , Kuber Singh Rawat (UGent) , Veronique Van Speybroeck (UGent) and Pascal Van Der Voort (UGent)

(2023) SMALL.
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Metal nanocatalyst sintering interrogated at complementary length scales

Eduardo Solano, Jolien Dendooven (UGent) , Davy Deduytsche (UGent) , Nithin Poonkottil (UGent) , Ji-Yu Feng, Maarten B. J. Roeffaers, Christophe Detavernier (UGent) and Matthias Filez (UGent)

(2023) SMALL. 19(5).
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Top‐down kinetic modeling from power law to elementary steps using KASTER : a methane steam reforming case study

Sébastien Siradze (UGent) , Jeroen Poissonnier (UGent) , Ana Rita Costa da Cruz (UGent) and Joris Thybaut (UGent)

(2023) AICHE JOURNAL. 69(9).
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- Journal Article
Digital PCR: a tool in clostridial mutant selection and detection

Evelien Dierick (UGent) , Chana Callens (UGent) , Ward De Spiegelaere (UGent) , Richard Ducatelle (UGent) , Filip Van Immerseel (UGent) and Evy Goossens (UGent)

(2023) Applied Microbiology and Biotechnology.
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Taming CRISPRi : dynamic range tuning through guide RNA diversion

Bob Van Hove, Lien De Wannemaeker (UGent) , Isolde Missiaen, Jo Maertens (UGent) and Marjan De Mey (UGent)

(2023) NEW BIOTECHNOLOGY. 77. p.50-57
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Spark discharge doping : achieving unprecedented control over aggregate fraction and backbone ordering in poly(3‐hexylthiophene) solutions

Fabian Eller, Felix A. Wenzel, Richard Hildner, Remco Havenith (UGent) and Eva M. Herzig

(2023) SMALL. 19(21).
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Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models

Francisco Carrillo-Perez, Marija Pizurica (UGent) , Michael G. Ozawa, Hannes Vogel, Robert B. West, Christina S. Kong, Luis Javier Herrera, Jeanne Shen and Olivier Gevaert

(2023) Cell Reports Methods. 3(8).
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- Conference Paper
- C3
Upcycling of plastic waste by an engineered microorganism into a novel chemical building block

Stijn Bovijn (UGent) , Tom Delmulle (UGent) and Wim Soetaert (UGent)

(2023) 19th International Conference on Renewable Resources & Biorefineries (RBB23), Abstracts.
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Engineering Comamonas testosteroni for the production of 2-pyrone-4,6-dicarboxylic acid as a promising building block

Tom Delmulle (UGent) , Stijn Bovijn (UGent) , Sari Deketelaere (UGent) , Martijn Castelein (UGent) , Tom Erauw, Matthias D'hooghe (UGent) and Wim Soetaert (UGent)

(2023) MICROBIAL CELL FACTORIES. 22(1).
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- Miscellaneous
Correction for Van Peteghem et al., 'The role of microorganisms and carbon-to-nitrogen ratios for microbial protein production from bioethanol'

Lotte Van Peteghem (UGent) , Myrsini Sakarika (UGent) , S. Matassa and Korneel Rabaey (UGent)

(2023) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 89(7).
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The quorum sensing peptide EntF* promotes colorectal cancer metastasis in mice : a new factor in the host-microbiome interaction

Evelien Wynendaele (UGent) , Nathan Debunne (UGent) , Yorick Janssens (UGent) , Anton De Spiegeleer (UGent) , Frederick Verbeke (UGent) , Liesa Tack, Sophie Van Welden (UGent) , Evy Goossens (UGent) , Daniel Knappe, Ralf Hoffmann, et al.

(2022) BMC BIOLOGY. 20(1).
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Mix-and-match : an improved, fast and accessible protocol for hypocotyl micrografting of Arabidopsis seedlings with systemic ACC responses as a case study

Lisa Vanderstraeten, Raul Sanchez Muñoz (UGent) , Thomas Depaepe (UGent) , Femke Auwelaert (UGent) and Dominique Van Der Straeten (UGent)

(2022) PLANT METHODS. 18(1).
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Finite element modeling of powder compaction : mini-tablets in comparison with conventionally sized tablets

Luz Naranjo Gómez (UGent) , Thomas De Beer (UGent) and Ashish Kumar (UGent)

(2022) PHARMACEUTICAL RESEARCH. 39(9). p.2109-2118
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Maternal metabolic health and fertility : we should not only care about but also for the oocyte!

J. L. M. R. Leroy, B. Meulders, K. Moorkens, I. Xhonneux, J. Slootmans, L. De Keersmaeker, A. Smits, Osvaldo Américo Bogado Pascottini (UGent) and W. F. A. Marei

(2022) REPRODUCTION FERTILITY AND DEVELOPMENT. 35(2). p.1-18
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- A2
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Exploration of archaeal nucleotide sugar epimerases unveils a new and highly promiscuous GDP-Gal4E subgroup

Carlos Alvarez Quispe (UGent) , Matthieu Da Costa (UGent) , Koen Beerens (UGent) and Tom Desmet (UGent)

(2022) CURRENT RESEARCH IN BIOTECHNOLOGY. 4. p.350-358
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Insertions and deletions in protein evolution and engineering

Simone Savino (UGent) , Tom Desmet (UGent) and Jorick Franceus (UGent)

(2022) BIOTECHNOLOGY ADVANCES. 60.
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Building mutational bridges between carbohydrate-active enzymes

Jorick Franceus (UGent) , Jolien Lormans (UGent) and Tom Desmet (UGent)

(2022) CURRENT OPINION IN BIOTECHNOLOGY. 78.
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Optimising bioreactor processes with in-situ product removal using mathematical programming : a case study for propionate production

Lucas Van der Hauwaert, Alberte Regueira López (UGent) , Ludwig Selder, An -Ping Zeng and Miguel Mauricio-Iglesias

(2022) COMPUTERS & CHEMICAL ENGINEERING. 168.
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Oleaginous yeasts : time to rethink the definition?

José Manuel Salvador López (UGent) , Meriam Vandeputte (UGent) and Inge Van Bogaert (UGent)

(2022) YEAST. 39(11-12). p.553-606
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Optimizing in-situ product removal operation in a bioreactor for different production scenarios

Lucas Van der Hauwaert, Alberte Regueira López (UGent) and Miguel Mauricio-Iglesias

(2022) IFAC PAPERSONLINE. 55(7). p.768-773
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Cost‐efficient modeling of distributed molar mass and topological variations in graft copolymer synthesis by upgrading the method of moments

Yi‐Yang Wu, Freddy Figueira De Barros (UGent) , Mariya Edeleva (UGent) , Paul Van Steenberge (UGent) , Dagmar D'hooge (UGent) , Yin‐Ning Zhou and Zheng‐Hong Luo

(2022) AICHE JOURNAL. 68(4).
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Chemisorption of CO2 in a gas–liquid vortex reactor : an interphase mass transfer efficiency assessment

Yi Ouyang (UGent) , Manuel Nuñez Manzano (UGent) , Siyuan Chen (UGent) , Ruben Wetzels, Tom Verspeelt (UGent) , Kevin Van Geem (UGent) and Geraldine Heynderickx (UGent)

(2022) AICHE JOURNAL. 68(5).
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A new generation of AD biomarkers : 2019 to 2021

Jade Hawksworth (UGent) , Esperanza Fernández and Kris Gevaert (UGent)

(2022) AGEING RESEARCH REVIEWS. 79.
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What can biofabrication do for space and what can space do for biofabrication?

Lorenzo Moroni, Kevin Tabury, Hilde Stenuit, Daniela Grimm, Sarah Baatout (UGent) and Vladimir Mironov

(2022) TRENDS IN BIOTECHNOLOGY. 40(4). p.398-411
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Genetically modified crops in developing countries : savior or traitor?

Hossein Azadi (UGent) , Fatemeh Taheri (UGent) , Samane Ghazali, Saghi Movahhed Moghaddam, Narges Siamian, Imaneh Goli, Shahla Choobchian, Maryam Pour, Ahsen Işık Özgüven, Kristina Janečková, et al.

(2022) JOURNAL OF CLEANER PRODUCTION. 371.
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The genetically modified organism shall not be refused? Talking back to the technosciences

Barbara Van Dyck, Anneleen Kenis (UGent) and Andy Stirling

(2022) ENVIRONMENT AND PLANNING E-NATURE AND SPACE. 5(3). p.1230-1251
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- A2
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Effects of salicylic acid on the production of polyphenols and the reducing power of Theobroma cacao calli

Lillien Fajardo Rosabal, Yans Guardia Puebla, Suyén Rodríguez Pérez, Ursula M. Rosabal Cordoví, Juan J. Silva Pupo and Stefaan Werbrouck (UGent)

(2022) CURRENT RESEARCH IN BIOTECHNOLOGY. 4. p.47-57
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Alprazolam detection using an electrochemical nanobiosensor based on AuNUs/Fe-Ni@rGO nanocomposite

Emadoddin Amin Sadrabadi, Fatemeh Khosravi, Ali Benvidi, Amin Shiralizadeh Dezfuli, Pouria Khashayar, Patricia Khashayar (UGent) and Mostafa Azimzadeh

(2022) BIOSENSORS-BASEL. 12(11).
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Poly(2-alkyl-2-oxazoline)s : a polymer platform to sustain the release from tablets with a high drug loading

Aseel Samaro (UGent) , Maarten Vergaelen (UGent) , Martin Purino (UGent) , Ali Tigrine (UGent) , Victor Retamero De La Rosa (UGent) , Niloofar Moazami Goudarzi (UGent) , Matthieu Boone (UGent) , Valérie Vanhoorne (UGent) , Richard Hoogenboom (UGent) and Chris Vervaet (UGent)

(2022) MATERIALS TODAY BIO. 16.
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Revising the stretch reflex threshold method to measure stretch hyperreflexia in cerebral palsy

Pedro Valadão, Lynn Bar-On (UGent) , Francesco Cenni, Harri Piitulainen, Janne Avela and Taija Finni

(2022) FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY. 10.
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'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).

Simone Maestri, Giorgio Gambino, Giulia Lopatriello, Andrea Minio, Irene Perrone, Emanuela Cosentino, Barbara Giovannone, Luca Marcolungo, Massimiliano Alfano, Stephane Rombauts (UGent) , et al.

(2022) BMC GENOMICS. 23(1).
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Acetobacter senegalensis isolated from mango fruits : its polyphasic characterization and adaptation to protect against stressors in the industrial production of vinegar : a review

Bassirou Ndoye, Rasoul Shafiei, Nastaran Shah Sanaei, Ilse Cleenwerck (UGent) , Marius K. Somda, Mamoudou Hama Dicko, Lat Souk Tounkara, Amadou Tidiane Guiro, Frank Delvigne and Philippe Thonart

(2022) JOURNAL OF APPLIED MICROBIOLOGY. 132(6). p.4130-4149
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- PhD Thesis
Exploring glycoside phosphorylases for the production of functional carbohydrates and glycosides

Zorica Ubiparip (UGent)

(2022)
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Redox-responsive hydrogels for tunable and 'on-demand' release of biomacromolecules

Ruveyda Kilic Boz, Duygu Aydin, Salli Kocak, Bianka Golba (UGent) , Rana Sanyal and Amitav Sanyal

(2022) BIOCONJUGATE CHEMISTRY. 33(5). p.839-847

Reflective multi-immersion microscope objectives inspired by the Schmidt telescope

Clustered regularly interspaced short palindromic repeats tools for plant metabolic engineering : achievements and perspectives

Personalized statistical modeling of soft tissue structures in the knee

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

European consumer and societal stakeholders' response to crop improvements and new plant breeding techniques

Principles of antibodies with ultralong complementarity-determining regions and picobodies

Challenges and progress towards industrial recombinant protein production in yeasts : a review

Public acceptance and stakeholder views of gene edited foods : a global overview

How to make sense of 3D representations for plant phenotyping: a compendium of processing and analysis techniques

Fine‐tuning the endcap chemistry of acrylated poly(ethylene glycol)‐based hydrogels for efficient burn wound exudate management

Improved node and arc multiplicity estimation in de Bruijn graphs using approximate inference in conditional random fields

Metal nanocatalyst sintering interrogated at complementary length scales (Small 5/2023)

We need to talk about disruption in bioethics : a commentary on Rueda, Pugh and Savulescu

Chiral photonic micromotors : uni‐ and bidirectional rotation and speed control in chiral photonic micromotors powered by light (Small 20/2023)

How woodcocks produce the most brilliant white plumage patches among the birds

Functional synthetic biology

Exploring the charge storage dynamics in donor–acceptor covalent organic frameworks based supercapacitors by employing ionic liquid electrolyte

Metal nanocatalyst sintering interrogated at complementary length scales

Top‐down kinetic modeling from power law to elementary steps using KASTER : a methane steam reforming case study

Digital PCR: a tool in clostridial mutant selection and detection

Taming CRISPRi : dynamic range tuning through guide RNA diversion

Spark discharge doping : achieving unprecedented control over aggregate fraction and backbone ordering in poly(3‐hexylthiophene) solutions

Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models

Upcycling of plastic waste by an engineered microorganism into a novel chemical building block

Engineering Comamonas testosteroni for the production of 2-pyrone-4,6-dicarboxylic acid as a promising building block

Correction for Van Peteghem et al., 'The role of microorganisms and carbon-to-nitrogen ratios for microbial protein production from bioethanol'

The quorum sensing peptide EntF* promotes colorectal cancer metastasis in mice : a new factor in the host-microbiome interaction

Mix-and-match : an improved, fast and accessible protocol for hypocotyl micrografting of Arabidopsis seedlings with systemic ACC responses as a case study

Finite element modeling of powder compaction : mini-tablets in comparison with conventionally sized tablets

Maternal metabolic health and fertility : we should not only care about but also for the oocyte!

Exploration of archaeal nucleotide sugar epimerases unveils a new and highly promiscuous GDP-Gal4E subgroup

Insertions and deletions in protein evolution and engineering

Building mutational bridges between carbohydrate-active enzymes

Optimising bioreactor processes with in-situ product removal using mathematical programming : a case study for propionate production

Oleaginous yeasts : time to rethink the definition?

Optimizing in-situ product removal operation in a bioreactor for different production scenarios

Cost‐efficient modeling of distributed molar mass and topological variations in graft copolymer synthesis by upgrading the method of moments

Chemisorption of CO2 in a gas–liquid vortex reactor : an interphase mass transfer efficiency assessment

A new generation of AD biomarkers : 2019 to 2021

What can biofabrication do for space and what can space do for biofabrication?

Genetically modified crops in developing countries : savior or traitor?

The genetically modified organism shall not be refused? Talking back to the technosciences

Effects of salicylic acid on the production of polyphenols and the reducing power of Theobroma cacao calli

Alprazolam detection using an electrochemical nanobiosensor based on AuNUs/Fe-Ni@rGO nanocomposite

Poly(2-alkyl-2-oxazoline)s : a polymer platform to sustain the release from tablets with a high drug loading

Revising the stretch reflex threshold method to measure stretch hyperreflexia in cerebral palsy

'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).

Acetobacter senegalensis isolated from mango fruits : its polyphasic characterization and adaptation to protect against stressors in the industrial production of vinegar : a review

Exploring glycoside phosphorylases for the production of functional carbohydrates and glycosides

Redox-responsive hydrogels for tunable and 'on-demand' release of biomacromolecules