Ghent University Academic Bibliography

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Molting process revealed by the detailed expression profiles of RXR1/RXR2 and mining the associated genes in a spider mite, Panonychus citri

Gang Li, Xun‐Yan Liu, Guy Smagghe (UGent) , Jin‐Zhi Niu and Jin‐Jun Wang

(2022) INSECT SCIENCE.
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Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter

Elisabeth Lambert, Ahmad Reza Mehdipour (UGent) , Alexander Schmidt, Gerhard Hummer and Camilo Perez

(2022) NATURE COMMUNICATIONS. 13(1).
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- Journal Article
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Rice diterpenoid phytoalexins are involved in defence against parasitic nematodes and shape rhizosphere nematode communities

Willem Desmedt (UGent) , Enoch Narh Kudjordjie, Satish Namdeo Chavan (UGent) , Juan Zhang, Riqing Li, Bing Yang, Mogens Nicolaisen, Masaki Mori, Reuben J. Peters, Bartel Vanholme (UGent) , et al.

(2022) NEW PHYTOLOGIST.
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Regulation of plant vitamin metabolism : backbone of biofortification for the alleviation of hidden hunger

Ling Jiang, Simon Strobbe (UGent) , Dominique Van Der Straeten (UGent) and Chunyi Zhang

(2021) MOLECULAR PLANT. 14(1). p.40-60
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Stereo-electronic control of reaction selectivity in short-chain dehydrogenases : decarboxylation, epimerization, and dehydration

Annika J.E. Borg, Koen Beerens (UGent) , Martin Pfeiffer, Tom Desmet (UGent) and Bernd Nidetzky

(2021) CURRENT OPINION IN CHEMICAL BIOLOGY. 61. p.43-52
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Expanding the enzyme repertoire for sugar nucleotide epimerization : the CDP-tyvelose 2-epimerase from Thermodesulfatator atlanticus for glucose/mannose interconversion

Christian Rapp, Stevie Van Overtveldt (UGent) , Koen Beerens (UGent) , Hansjörg Weber, Tom Desmet (UGent) and Bernd Nidetzky

(2021) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 87(4).
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- Journal Article
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Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria

Shanshan Qi (UGent) , Alexander Bogdanov, Margo Cnockaert (UGent) , Tessa Acar (UGent) , Sarah Ranty-Roby, Tom Coenye (UGent) , Peter Vandamme (UGent) , Gabriele M. König, Max Crüsemann and Aurélien Carlier (UGent)

(2021) ENVIRONMENTAL MICROBIOLOGY. 23(4). p.2132-2151
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Insights into the mechanisms implicated in Pinus pinaster resistance to pinewood nematode

Inês Sofia Barrios Modesto (UGent) , Lieven Sterck (UGent) , Vicent Arbona, Aurelio Gómez-Cadenas, Isabel Carrasquinho, Yves Van de Peer (UGent) and Célia M. Miguel

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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An independent evolutionary origin for insect deterrent cucurbitacins in Iberis amara

Lemeng Dong, Aldo Almeida, Jacob Pollier (UGent) , Bekzod Khakimov, Jean-Etienne Bassard, Karel Miettinen (UGent) , Dan Stærk, Rahimi Mehran, Carl Erik Olsen, Mohammed Saddik Motawia, et al.

(2021) MOLECULAR BIOLOGY AND EVOLUTION. 38(11). p.4659-4673
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Local regulation of auxin transport in root-apex transition zone mediates aluminium-induced Arabidopsis root-growth inhibition

Cuiling Li, Guangchao Liu, Xiaoyu Geng, Chunmei He, Taiyong Quan, Ken‐ichiro Hayashi, Ive De Smet (UGent) , Hélène S. Robert, Zhaojun Ding and Zhong‐Bao Yang

(2021) PLANT JOURNAL. 108(1). p.55-66
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Biomass fast pyrolysis in an innovative gas-solid vortex reactor : experimental proof of concept

Manuel Nunez Manzano (UGent) , Arturo Gonzalez Quiroga, Patrice Perreault, Sepehr Madanikashani (UGent) , Laurien Vandewalle (UGent) , Guy Marin (UGent) , Geraldine Heynderickx (UGent) and Kevin Van Geem (UGent)

(2021) JOURNAL OF ANALYTICAL AND APPLIED PYROLYSIS. 156.
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The diverse salt-stress response of Arabidopsis ctr1-1 and ein2-1 ethylene signaling mutants is linked to altered root auxin homeostasis

Irina I. Vaseva, Kiril Mishev, Thomas Depaepe (UGent) , Valya Vassileva and Dominique Van Der Straeten (UGent)

(2021) PLANTS-BASEL. 10(3).
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Two chemically distinct root lignin barriers control solute and water balance

Guilhem Reyt, Priya Ramakrishna, Isai Salas-González, Satoshi Fujita, Ashley Love, David Tiemessen, Catherine Lapierre, Kris Morreel (UGent) , Monica Calvo-Polanco, Paulina Flis, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana

Anelia Iantcheva, Miroslava Zhiponova, Miglena Revalska, Jefri Heyman (UGent) , Ivayla Dincheva, Ilian Badjakov, Nathan De Geyter (UGent) , Irina Boycheva, Sofie Goormachtig (UGent) and Lieven De Veylder (UGent)

(2021) PROTOPLASMA. 259. p.277-290
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Shifts in the rhizobiome during consecutive in planta enrichment for phosphate-solubilizing bacteria differentially affect maize P status

Noémie De Zutter (UGent) , Maarten Ameye (UGent) , Jane Debode, Caroline De Tender (UGent) , Sarah Ommeslag, Jan Verwaeren (UGent) , Pieter Vermeir (UGent) , Kris Audenaert (UGent) and Leen De Gelder (UGent)

(2021) MICROBIAL BIOTECHNOLOGY. 14(4). p.1594-1612
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Prospects to improve the nutritional quality of crops

Lars B. Scharff, Vandasue L. R. Saltenis, Poul Erik Jensen, Alexandra Baekelandt (UGent) , Alexandra J. Burgess, Meike Burow, Aldo Ceriotti, Jean‐Pierre Cohan, Fernando Geu‐Flores, Barbara Ann Halkier, et al.

(2021) FOOD AND ENERGY SECURITY. 11.
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Effect of polyploidy induction on natural metabolite production in medicinal plants

Hadi Madani, Ainoa Escrich, Bahman Hosseini, Raul Sanchez Muñoz (UGent) , Abbas Khojasteh and Javier Palazon

(2021) BIOMOLECULES. 11(6).
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Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Pingtao Ding, Toshiyuki Sakai, Ram Krishna Shrestha, Nicolás Manosalva Pérez (UGent) , Wenbin Guo, Bruno Pok Man Ngou, Shengbo He, Chang Liu, Xiaoqi Feng, Runxuan Zhang, et al.

(2021) JOURNAL OF EXPERIMENTAL BOTANY. 72(22). p.7927-7941
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Behind the scenes : the impact of bioactive phenylpropanoids on the growth phenotypes of Arabidopsis lignin mutants

Ilias El Houari (UGent) , Wout Boerjan (UGent) and Bartel Vanholme (UGent)

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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Lignin aromatics to PHA polymers : nitrogen and oxygen are the key factors for pseudomonas

Juan Esteban Ramirez Morales (UGent) , Phillip Czichowski, Volkan Besirlioglu, Lars Regestein, Korneel Rabaey (UGent) , Lars M. Blank and Miriam A. Rosenbaum

(2021) ACS SUSTAINABLE CHEMISTRY & ENGINEERING. 9(31). p.10579-10590
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- Miscellaneous
Plant signaling : interplay of brassinosteroids and auxin in root meristems

Wei Xuan and Tom Beeckman (UGent)

(2021) CURRENT BIOLOGY. 31(20). p.R1392-R1395
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Incorporation of catechyl monomers into lignins : lignification from the non-phenolic end via Diels–Alder cycloaddition?

Daisuke Ando, Fachuang Lu, Hoon Kim, Alexis Eugene, Yuki Tobimatsu, Ruben Vanholme (UGent) , Thomas J. Elder, Wout Boerjan (UGent) and John Ralph

(2021) GREEN CHEMISTRY. 23(22). p.8995-9013
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MEIS2 is an adrenergic core regulatory transcription factor involved in early initiation of TH-MYCN-driven neuroblastoma formation

Jolien De Wyn (UGent) , Mark W. Zimmerman, Nina Weichert-Leahey, Carolina de Carvalho Nunes (UGent) , Belamy B. Cheung, Brian J. Abraham, Anneleen Beckers (UGent) , Pieter-Jan Volders (UGent) , Bieke Decaesteker (UGent) , Daniel R. Carter, et al.

(2021) CANCERS. 13(19).
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Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production

Chi Song, Fangfang Fu, Lulu Yang, Yan Niu, Zhaoyang Tian, Xiangxiang He, Xiaoming Yang, Jie Chen, Wei Sun, Tao Wan, et al.

(2021) COMMUNICATIONS BIOLOGY. 4(1).
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Overexpression of F-Box Nictaba promotes defense and anthocyanin accumulation in Arabidopsis thaliana after pseudomonas syringae infection

Andrea Romero Pérez (UGent) , Maarten Ameye (UGent) , Kris Audenaert (UGent) and Els Van Damme (UGent)

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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Regulatory roles of microRNAs in insect pests : prospective targets for insect pest control

Qiang Zhang, Wei Dou, Nji Tizi Clauvis Taning (UGent) , Guy Smagghe (UGent) and Jin-Jun Wang

(2021) CURRENT OPINION IN BIOTECHNOLOGY. 70. p.158-166
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Induced resistance by ascorbate oxidation involves potentiating of the phenylpropanoid pathway and improved rice tolerance to parasitic nematodes

Richard Raj Singh (UGent) , Jessil Ann Pajar, Kris Audenaert (UGent) and Tina Kyndt (UGent)

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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Novel alkaloids from marine actinobacteria : discovery and characterization

Anne-Sofie De Rop, Jeltien Rombaut (UGent) , Thomas Willems (UGent) , Marilyn De Graeve (UGent) , Lynn Vanhaecke (UGent) , Paco Hulpiau, Sofie De Maeseneire (UGent) , Maarten De Mol (UGent) and Wim Soetaert (UGent)

(2021) MARINE DRUGS. 20(1).
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Volatile organic compounds emitted by Aspergillus flavus strains producing or not aflatoxin B1

Laurie Josselin, Caroline De Clerck, Marthe De Boevre (UGent) , Antonio Moretti, M. Haissam Jijakli, Helene Soyeurt and Marie-Laure Fauconnier

(2021) TOXINS. 13(10).
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A century-old mystery unveiled : Sekizaisou is a natural lignin mutant

Masanobu Yamamoto, Hirokazu Tomiyama, Akio Koyama, Hisato Okuizumi, Sarah Liu, Ruben Vanholme (UGent) , Geert Goeminne (UGent) , Yuta Hirai, Hu Shi, Nuoendagula Nuoendagula, et al.

(2020) PLANT PHYSIOLOGY. 182(4). p.1821-1828
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ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content

Lina Gallego-Giraldo, Chang Liu, Sara Pose-Albacete, Sivakumar Pattathil, Angelo Gabriel Peralta, Jenna Young, Jan Westpheling, Michael G. Hahn, Xiaolan Rao, J. Paul Knox, et al.

(2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(6). p.3281-3290
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Salicylic acid targets protein phosphatase 2A to attenuate growth in plants

Shutang Tan, Melinda Abas, Inge Verstraeten, Matouš Glanc, Gergely Molnár, Jakub Hajný, Pavel Lasák, Ivan Petřík, Eugenia Russinova (UGent) , Jan Petrášek, et al.

(2020) CURRENT BIOLOGY. 30. p.381-395
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PIRIN2 suppresses S‐type lignin accumulation in a noncell‐autonomous manner in Arabidopsis xylem elements

Bo Zhang, Bernadette Sztojka, Sacha Escamez, Ruben Vanholme (UGent) , Mattias Hedenström, Yin Wang, Halbay Turumtay (UGent) , András Gorzsás, Wout Boerjan (UGent) and Hannele Tuominen

(2020) NEW PHYTOLOGIST. 225(5). p.1923-1935
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Phylogeny and sequence space : a combined approach to analyze the evolutionary trajectories of homologous proteins : the case study of aminodeoxychorismate synthase

Sylvain Lespinats, Olivier De Clerck (UGent) , Benoit Colange, Vera Gorelova (UGent) , Delphine Grando, Eric Marechal, Dominique Van Der Straeten (UGent) , Fabrice Rebeille and Olivier Bastien

(2020) ACTA BIOTHEORETICA. 68(1). p.139-156
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Parental silencing of a horizontally transferred carotenoid desaturase gene causes a reduction of red pigment and fitness in the pea aphid

Bi-Yue Ding, Jinzhi Niu, Feng Shang, Li Yang, Wei Zhang, Guy Smagghe (UGent) and Jin-Jun Wang

(2020) PEST MANAGEMENT SCIENCE. 76(7). p.2423-2433
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Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Nuria Orive-Milla, Tom Delmulle (UGent) , Marjan De Mey (UGent) , Magda Faijes and Antoni Planas

(2020) METABOLIC ENGINEERING. 61. p.106-119
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Cyclic lipopeptide‐producing Pseudomonas koreensis group strains dominate the cocoyam rhizosphere of a Pythium root rot suppressive soil contrasting with P. putida prominence in conducive soils

Feyisara Eyiwumi Oni (UGent) , Niels Geudens (UGent) , Joseph T. Onyeka, Oluwatoyin Faith Olorunleke, Ayodeji Ekundayo Salami, Olumide Owolabi Omoboye, Anthony Arguelles Arias, Amayana Adiobo, Stefaan De Neve (UGent) , Marc Ongena, et al.

(2020) ENVIRONMENTAL MICROBIOLOGY. 22(12). p.5137-5155
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Novel insights into the existence of the putative UDP-glucuronate 5-epimerase specificity

Ophelia Gevaert (UGent) , Stevie Van Overtveldt (UGent) , Matthieu Da Costa (UGent) , Koen Beerens (UGent) and Tom Desmet (UGent)

(2020) CATALYSTS. 10(2).
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The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

Linzhou Li, Sibo Wang, Hongli Wang, Sunil Kumar Sahu, Birger Marin, Haoyuan Li, Yan Xu, Hongping Liang, Zhen Li (UGent) , Shifeng Cheng, et al.

(2020) NATURE ECOLOGY & EVOLUTION. 4(9). p.1220-1231
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The molecular basis of JAZ-MYC coupling, a protein-protein interface essential for plant response to stressors

Samara Oña Chuquimarca, Sebastián Ayala-Ruano, Jonas Goossens (UGent) , Laurens Pauwels (UGent) , Alain Goossens (UGent) , Antonio Leon-Reyes and Miguel Ángel Méndez

(2020) FRONTIERS IN PLANT SCIENCE. 11.
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Biofilm mode of cultivation leads to an improvement of the entomotoxic patterns of two Aspergillus species

Frederic Francis, Florent Druart, José Diana Di Mavungu (UGent) , Marthe De Boevre (UGent) , Sarah De Saeger (UGent) and Frank Delvigne

(2020) MICROORGANISMS. 8(5).
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A hairy-root transformation protocol for Trigonella foenum-graecum L. as a tool for metabolic engineering and specialised metabolite pathway elucidation

Constantine Garagounis, Konstantina Beritza, Maria-Eleni Georgopoulou, Prashant Sonawane, Kosmas Haralampidis, Alain Goossens (UGent) , Asaph Aharoni and Kalliope K. Papadopoulou

(2020) PLANT PHYSIOLOGY AND BIOCHEMISTRY. 154. p.451-462
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Alkaloids from marine fungi : promising antimicrobials

Thomas Willems (UGent) , Maarten De Mol (UGent) , Aleksandar De Bruycker, Sofie De Maeseneire (UGent) and Wim Soetaert (UGent)

(2020) ANTIBIOTICS-BASEL. 9(6).
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Determinants of the nucleotide specificity in the carbohydrate epimerase family 1

Stevie Van Overtveldt (UGent) , Matthieu Da Costa (UGent) , Ophelia Gevaert (UGent) , Henk-Jan Joosten, Koen Beerens (UGent) and Tom Desmet (UGent)

(2020) BIOTECHNOLOGY JOURNAL. 15(11).
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Lessons learned from 40 novel PIGA patients and a review of the literature

Allan Bayat, Alexej Knaus, Manuela Pendziwiat, Alexandra Afenjar, Tahsin Stefan Barakat, Friedrich Bosch, Bert Callewaert (UGent) , Patrick Calvas, Berten Ceulemans, Nicolas Chassaing, et al.

(2020) EPILEPSIA. 61(6). p.1142-1155
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Chemical repertoire and biosynthetic machinery of the Aspergillus flavus secondary metabolome : a review

Valdet Uka, Jeffrey W. Cary, Matthew D. Lebar, Olivier Puel, Sarah De Saeger (UGent) and José Diana Di Mavungu (UGent)

(2020) COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY. 19(6). p.2797-2842
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RhIR-regulated acyl-homoserine lactone quorum sensing in a cystic fibrosis isolate of Pseudomonas aeruginosa

Renae L. Cruz, Kyle L. Asfahl, Sara Van den Bossche (UGent) , Tom Coenye (UGent) , Aurélie Crabbé (UGent) and Ajai A. Dandekar

(2020) MBIO. 11(2).
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Chromosome-level genome assembly of a parent species of widely cultivated azaleas

Fu-Sheng Yang, Shuai Nie, Hui Liu, Tian-Le Shi, Xue-Chan Tian, Shan-Shan Zhou, Yu-Tao Bao, Kai-Hua Jia, Jing-Fang Guo, Wei Zhao, et al.

(2020) NATURE COMMUNICATIONS. 11.
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Metabolomics reveal induction of ROS production and glycosylation events in wheat upon exposure to the green leaf volatile Z-3-hexenyl acetate

Maarten Ameye (UGent) , Lieven Van Meulebroek (UGent) , Bianca Meuninck, Lynn Vanhaecke (UGent) , Guy Smagghe (UGent) , Geert Haesaert (UGent) and Kris Audenaert (UGent)

(2020) FRONTIERS IN PLANT SCIENCE. 11.
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Transfecting Taxus x media protoplasts to study transcription factors BIS2 and TSAR2 as activators of taxane-kelated genes

Raul Sanchez Muñoz (UGent) , Lorena Almagro, Rosa M. Cusido, Mercedes Bonfill, Javier Palazon and Elisabeth Moyano

(2020) PLANT AND CELL PHYSIOLOGY. 61(3). p.576-583

Molting process revealed by the detailed expression profiles of RXR1/RXR2 and mining the associated genes in a spider mite, Panonychus citri

Evidence for a trap-and-flip mechanism in a proton-dependent lipid transporter

Rice diterpenoid phytoalexins are involved in defence against parasitic nematodes and shape rhizosphere nematode communities

Regulation of plant vitamin metabolism : backbone of biofortification for the alleviation of hidden hunger

Stereo-electronic control of reaction selectivity in short-chain dehydrogenases : decarboxylation, epimerization, and dehydration

Expanding the enzyme repertoire for sugar nucleotide epimerization : the CDP-tyvelose 2-epimerase from Thermodesulfatator atlanticus for glucose/mannose interconversion

Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria

Insights into the mechanisms implicated in Pinus pinaster resistance to pinewood nematode

An independent evolutionary origin for insect deterrent cucurbitacins in Iberis amara

Local regulation of auxin transport in root-apex transition zone mediates aluminium-induced Arabidopsis root-growth inhibition

Biomass fast pyrolysis in an innovative gas-solid vortex reactor : experimental proof of concept

The diverse salt-stress response of Arabidopsis ctr1-1 and ein2-1 ethylene signaling mutants is linked to altered root auxin homeostasis

Two chemically distinct root lignin barriers control solute and water balance

A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana

Shifts in the rhizobiome during consecutive in planta enrichment for phosphate-solubilizing bacteria differentially affect maize P status

Prospects to improve the nutritional quality of crops

Effect of polyploidy induction on natural metabolite production in medicinal plants

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Behind the scenes : the impact of bioactive phenylpropanoids on the growth phenotypes of Arabidopsis lignin mutants

Lignin aromatics to PHA polymers : nitrogen and oxygen are the key factors for pseudomonas

Plant signaling : interplay of brassinosteroids and auxin in root meristems

Incorporation of catechyl monomers into lignins : lignification from the non-phenolic end via Diels–Alder cycloaddition?

MEIS2 is an adrenergic core regulatory transcription factor involved in early initiation of TH-MYCN-driven neuroblastoma formation

Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production

Overexpression of F-Box Nictaba promotes defense and anthocyanin accumulation in Arabidopsis thaliana after pseudomonas syringae infection

Regulatory roles of microRNAs in insect pests : prospective targets for insect pest control

Induced resistance by ascorbate oxidation involves potentiating of the phenylpropanoid pathway and improved rice tolerance to parasitic nematodes

Novel alkaloids from marine actinobacteria : discovery and characterization

Volatile organic compounds emitted by Aspergillus flavus strains producing or not aflatoxin B1

A century-old mystery unveiled : Sekizaisou is a natural lignin mutant

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content

Salicylic acid targets protein phosphatase 2A to attenuate growth in plants

PIRIN2 suppresses S‐type lignin accumulation in a noncell‐autonomous manner in Arabidopsis xylem elements

Phylogeny and sequence space : a combined approach to analyze the evolutionary trajectories of homologous proteins : the case study of aminodeoxychorismate synthase

Parental silencing of a horizontally transferred carotenoid desaturase gene causes a reduction of red pigment and fitness in the pea aphid

Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Cyclic lipopeptide‐producing Pseudomonas koreensis group strains dominate the cocoyam rhizosphere of a Pythium root rot suppressive soil contrasting with P. putida prominence in conducive soils

Novel insights into the existence of the putative UDP-glucuronate 5-epimerase specificity

The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

The molecular basis of JAZ-MYC coupling, a protein-protein interface essential for plant response to stressors

Biofilm mode of cultivation leads to an improvement of the entomotoxic patterns of two Aspergillus species

A hairy-root transformation protocol for Trigonella foenum-graecum L. as a tool for metabolic engineering and specialised metabolite pathway elucidation

Alkaloids from marine fungi : promising antimicrobials

Determinants of the nucleotide specificity in the carbohydrate epimerase family 1

Lessons learned from 40 novel PIGA patients and a review of the literature

Chemical repertoire and biosynthetic machinery of the Aspergillus flavus secondary metabolome : a review

RhIR-regulated acyl-homoserine lactone quorum sensing in a cystic fibrosis isolate of Pseudomonas aeruginosa

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

Metabolomics reveal induction of ROS production and glycosylation events in wheat upon exposure to the green leaf volatile Z-3-hexenyl acetate

Transfecting Taxus x media protoplasts to study transcription factors BIS2 and TSAR2 as activators of taxane-kelated genes