Ghent University Academic Bibliography

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High-throughput assays to identify archaea-targeting nitrification inhibitors

Fabian Beeckman (UGent) , Andrzej Drozdzecki (UGent) , Alexa De Knijf (UGent) , Dominique Audenaert (UGent) , Tom Beeckman (UGent) and Hans Motte (UGent)

(2024) FRONTIERS IN PLANT SCIENCE. 14.
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Geology defines microbiome structure and composition in nunataks and valleys of the Sør Rondane Mountains, East Antarctica

Valentina Savaglia (UGent) , Sam Lambrechts (UGent) , Bjorn Tytgat (UGent) , Quinten Vanhellemont (UGent) , Josef Elster, Anne Willems (UGent) , Annick Wilmotte, Elie Verleyen (UGent) and Wim Vyverman (UGent)

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

Xaviera A. Lopez-Cortes, Jose M. Manriquez-Troncoso, Ruber Hernandez-Garcia and Daniel Peralta (UGent)

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Chao Wang (UGent) , Tom Defoirdt (UGent) and Andreja Rajkovic (UGent)

(2024) JOURNAL OF APPLIED MICROBIOLOGY. 135(4).
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Above- and belowground composition and diversity of subtropical plantations and their relationships with soil nutrient stocks

Liping Wei (UGent) , Yves Bergeron, Pieter De Frenne (UGent) , Kris Verheyen (UGent) , Lingmin Tian, Hai Ren and Shuguang Jian

(2024) PLANT AND SOIL. 495(1-2). p.235-252
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The dogma of the sterile uterus revisited : does microbial seeding occur during fetal life in humans and animals?

Penelope Banchi (UGent) , Barbara Colitti, Geert Opsomer (UGent) , Ada Rota and Ann Van Soom (UGent)

(2024) REPRODUCTION. 167(1).
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The immunostimulatory activity of sea spray aerosols : bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells

Yunmeng Li (UGent) , Wyona Schütte (UGent) , Max Dekeukeleire (UGent) , Colin Janssen (UGent) , Nico Boon (UGent) , Jana Asselman (UGent) , Sarah Lebeer, Irina Spacova and Maarten De Rijcke

(2024) SCIENCE OF THE TOTAL ENVIRONMENT. 927.
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Antibiofilm activity of Prevotella species from the cystic fibrosis lung microbiota against Pseudomonas aeruginosa

Lucia Grassi (UGent) , Kyle L. Asfahl, Sara Van den Bossche (UGent) , Ine Maenhout, Andrea Sass (UGent) , Yannick Vande Weygaerde (UGent) , Eva Van Braeckel (UGent) , Bruno Verhasselt (UGent) , Jerina Boelens (UGent) , Michael M. Tunney, et al.

(2024) BIOFILM. 7.
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Addition of (bio)surfactants in the biofiltration of hydrophobic volatile organic compounds in air

Paula Lamprea Pineda (UGent) , Kristof Demeestere (UGent) , José Joaquin Gonzaléz Cortés (UGent) , Nico Boon (UGent) , Frank Devlieghere (UGent) , Herman Van Langenhove (UGent) and Christophe Walgraeve (UGent)

(2024) JOURNAL OF ENVIRONMENTAL MANAGEMENT. 353.
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Unlocking the mechanism of action : a cost-effective flow cytometry approach for accelerating antimicrobial drug development

Fabian Mermans (UGent) , Hanna De Baets (UGent) , Cristina García Timermans (UGent) , Wim Teughels and Nico Boon (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(4).
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Co-supplementation of baobab fiber and arabic gum synergistically modulates the in vitro human gut microbiome revealing complementary and promising prebiotic properties

Cindy Duysburgh, Marlies Govaert, Damien Guillemet and Massimo Marzorati (UGent)

(2024) NUTRIENTS. 16(11).
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The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome

Laura E. Mccoubrey, Nidhi Seegobin, Nannapat Sangfuang, Frederic Moens, Hans Duyvejonck, Eline Declerck, Arno Dierick, Massimo Marzorati (UGent) and Abdul W. Basit

(2024) JOURNAL OF CONTROLLED RELEASE. 369. p.630-641
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Environmental monitoring of a freezing tunnel and its close surroundings in the potato processing industry : insights into Listeria monocytogenes contamination, cleaning and disinfection efficacy, and transmission risks

Tessa Tuytschaever (UGent) , Katleen Raes (UGent) and Imca Sampers (UGent)

(2024) FOOD CONTROL. 165.
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Nitrogen and me : how little did we, and do we know about 'stikstof - azote - nitrogen'?

Willy Verstraete (UGent)

(2024) WATER RESEARCH. 258.
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Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria

Yanis Maire, François G Schmitt, Konstantinos Kormas, Sotirios Vasileiadis, Amandine Caruana, Dimitra-Ioli Skouroliakou (UGent) , Vasileios Bampouris, Lucie Courcot, Fabienne Hervé, Muriel Crouvoisier, et al.

(2024) FEMS MICROBIOLOGY ECOLOGY. 100(8).
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Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Stephanie Steyaert (UGent) , Charlotte Peeters (UGent) , Anneleen Wieme (UGent) , Astrid Muyldermans, Kristof Vandoorslaer, Theodore Spilker, Ingrid Wybo, Denis Piérard, John J. LiPuma and Peter Vandamme (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(6).
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Phage lysins for intestinal microbiome modulation : current challenges and enabling techniques

Iris Pottie (UGent) , Roberto Vázquez (UGent) , Tom Van de Wiele (UGent) and Yves Briers (UGent)

(2024) GUT MICROBES. 16(1).
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Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Marijn J. Timmer, Jolien De Paepe, Tim Van Winckel, Marc Spiller, Irina Spacova, Kim De Paepe (UGent) , Isabel Pintelon, Sarah Lebeer, Winnok H. De Vos, Christophe Lasseur, et al.

(2024) ACS ES&T ENGINEERING. 4(7). p.1609-1621
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Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Nick Vereecke (UGent)

(2023)
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Challenging the hypothesis of in utero microbiota acquisition in healthy canine and feline pregnancies at term : preliminary data

Penelope Banchi (UGent) , Barbara Colitti, Andrea Del Carro, Michela Corro, Alessia Bertero, Ugo Ala, Angela Del Carro, Ann Van Soom (UGent) , Luigi Bertolotti and Ada Rota

(2023) VETERINARY SCIENCES. 10(5).
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Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 synergistically boost butyrate levels upon tributyrin administration ex vivo

Pieter Van den Abbeele (UGent) , Mallory Goggans, Stef Deyaert, Aurélien Baudot, Michiel Van de Vliet (UGent) , Marta Calatayud Arroyo (UGent) and Michael Lelah

(2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 24(6).
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Combining phages and antibiotic to enhance antibiofilm efficacy against an in vitro dual species wound biofilm

Ergun Akturk, Luís D.R. Melo, Hugo Oliveira, Aurélie Crabbé (UGent) , Tom Coenye (UGent) and Joana Azeredo

(2023) BIOFILM. 6.
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- Conference Paper
- C3
Smart living biomaterials : development of a mycelium-bacteria cocultivation platform to engineer material functionalities

Hannelore Wilssens (UGent) , Marjan De Mey (UGent) and Eveline Peeters

(2023) 8th Conference on Physiology of Yeasts and Filamentous Fungi (PYFF8), Abstracts.
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels, Monique Blignaut, Guillaume Marti, Simon Sieber, Peter Vandamme (UGent) , Marion Meyer and Aurélien Carlier (UGent)

(2023) ENVIRONMENTAL MICROBIOLOGY. 25(2). p.454-472
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Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms - an example from dairy isolates

Faizan Ahmed Sadiq, Koen De Reu, Hans Steenackers, Ann van de Walle, Mette Burmolle and Marc Heyndrickx (UGent)

(2023) ISME COMMUNICATIONS. 3(1).
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Beneficial microbes to suppress Vibrio and improve the culture performance of copepod Tigriopus japonicus Mori

Javad Sahandi, Patrick Sorgeloos (UGent) , Kam W. Tang, Fanghong Mu, Tatyana Mayor and Wenbing Zhang

(2023) MICROBIAL PATHOGENESIS. 183.
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Optimizing control strategies for urine nitrification : narrow pH control band enhances process stability and reduces nitrous oxide emissions

Valentin Faust (UGent) , Nico Boon (UGent) , Ramon Ganigué (UGent) , Siegfried E. Vlaeminck and Kai M. Udert

(2023) FRONTIERS IN ENVIRONMENTAL SCIENCE. 11.
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Capacity of a microbial synbiotic to rescue the in vitro metabolic activity of the gut microbiome following perturbation with alcohol or antibiotics

Braden T. Tierney, Pieter Van den Abbeele, Gabriel A. Al-Ghalith, Lynn Verstrepen, Jonas Ghyselinck, Marta Calatayud Arroyo (UGent) , Massimo Marzorati (UGent) , Azza A. Gadir, Brendan Daisley, Gregor Reid, et al.

(2023) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 89(3).
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Probiotics for oral health: do they deliver what they promise?

Wannes Van Holm (UGent) , Katalina Lauwens, Pieter De Wever, Art Schuermans, Naiera Zayed (UGent) , Ferda Pamuk, Mehraveh Saghi, Pedro Fardim, Kristel Bernaerts, Nico Boon (UGent) , et al.

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Flow cytometry for on-line microbial regrowth monitoring in a membrane filtration plant : pilot-scale case study for wastewater reuse

Thomas Pluym (UGent) , Cristina García Timermans (UGent) , Sander Vervloet, Riet Cornelissen, Nico Boon (UGent) and Bart De Gusseme (UGent)

(2023) ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY. 9(8). p.2128-2139
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Bioaugmentation of a structural extracellular polymeric substance (EPS) producer to improve activated sludge bioflocculation : lessons learned

An-Sofie Christiaens, Robin Daenen (UGent) and Ilse Smets

(2023) WATER PRACTICE AND TECHNOLOGY. 18(7). p.1663-1680
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Gluconic acid improves performance of newly weaned piglets associated with alterations in gut microbiome and fermentation

Joris Michiels (UGent) , Damien Truffin, Maryam Majdeddin (UGent) , Mario Van Poucke (UGent) , Elout Van Liefferinge, Noémie Van Noten, Mario Vandaele (UGent) , Céline Van Kerschaver, Jeroen Degroote (UGent) , Luc Peelman (UGent) , et al.

(2023) PORCINE HEALTH MANAGEMENT. 9(1).
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Sulphate reduction, mixed sulphide- and thiosulphate-driven Autotrophic denitrification, NItrification, and Anammox (SANIA) integrated process for sustainable wastewater treatment

Chu-Kuan Jiang, Yang-Fan Deng, Zou Xu, Buddhima Siriweera, Di Wu (UGent) and Guang-Hao Chen

(2023) WATER RESEARCH. 247.
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Enhancing microbial salt tolerance through low-voltage stimulation for improved p-chloronitrobenzene (p-CNB) removal in high-salinity wastewater

Long Chen, Li-Ting Zhou, Yang-Cheng Ding, Di Wu (UGent) and Hua-Jun Feng

(2023) SCIENCE OF THE TOTAL ENVIRONMENT. 905.
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Bacteria involved in 128 septic foals and their antimicrobial resistance

Donatienne Castelain (UGent) , Mathilde Pas (UGent) , Alexander Dufourni (UGent) , Ellen Paulussen (UGent) , Laurence Lefère (UGent) , Jade Bokma (UGent) , Filip Boyen (UGent) , Gunther van Loon (UGent) and Bart Pardon (UGent)

(2023) 5th International Conference of the European College of Veterinary Microbiology (ICECVM 2023), Abstracts.
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The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Gowri Amanda Hettiarachchi (UGent) , Margo Cnockaert (UGent) , Marie Joossens (UGent) , Antoine Gekiere, Ivan Meeus (UGent) , Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) and Peter Vandamme (UGent)

(2023) MICROBIAL ECOLOGY. 86(4). p.3013-3026
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Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur

Sofie Rutjens (UGent) , Nick Vereecke (UGent) , Jannes Sauer (UGent) , Siska Croubels (UGent) and Mathias Devreese (UGent)

(2023) VETERINARY RESEARCH. 54(1).
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Novel endophytic Pseudescherichia sp. GSE25 strain significantly controls Fusarium graminearum and reduces deoxynivalenol in Wheat

Meiling Gao, Mohamed Fathi Abdallah (UGent) , Minggui Song, Yiqian Xu, Daiyuan Sun, Ping Lu and Jianhua Wang

(2023) TOXINS. 15(12).
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Klinische aanpak van puppysterfte bij de hond

Penelope Banchi (UGent) , Joke Lannoo (UGent) , Guillaume Domain (UGent) , Robby van Leeuwenberg and Ann Van Soom (UGent)

(2023) VLAAMS DIERGENEESKUNDIG TIJDSCHRIFT. 92(2). p.82-90
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Warming and nutrient enrichment can trigger seaweed loss by dysregulation of the microbiome structure and predicted function

Francesco Paolo Mancuso (UGent) , Kathryn Morrissey, Olivier De Clerck (UGent) and Laura Airoldi

(2023) SCIENCE OF THE TOTAL ENVIRONMENT. 879.
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Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome

Kankana Kundu (UGent) , Josefien Van Landuyt (UGent) , Valérie Mattelin (UGent) , Bram Martin (UGent) , Marijke Neyts, Koen Parmentier and Nico Boon (UGent)

(2023) MARINE POLLUTION BULLETIN. 190.
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Bacterial responses to plant antimicrobials : the case of alkannin and shikonin derivatives

Angélique Rat (UGent) , Antigoni E. Koletti, Nebojsa Rodic, Vassilios P. Papageorgiou, Anne Willems (UGent) and Andreana N. Assimopoulou

(2023) FRONTIERS IN PHARMACOLOGY. 14.
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Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov

Henry David Naranjo Benavides (UGent) , Liesbeth Lebbe (UGent) , Margo Cnockaert (UGent) , Florent Lassalle, Chin Chin Too (UGent) and Anne Willems (UGent)

(2023) SYSTEMATIC AND APPLIED MICROBIOLOGY. 46(3).
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Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

Pieter Candry, Grayson L. Chadwick, Jose Maria Caravajal-Arroyo, Tim Lacoere (UGent) , Mari-Karoliina Henriikka Winkler, Ramon Ganigué (UGent) , Victoria J. Orphan and Korneel Rabaey (UGent)

(2023) ISME JOURNAL. 17(11). p.2014-2022
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Microbial life strategy with high rRNA operon copy number facilitates the energy and nutrient flux in anaerobic digestion

Qiang Lin, Jo De Vrieze (UGent) , Xiaoyu Fang, Lingjuan Li and Xiangzhen Li

(2022) WATER RESEARCH. 226.
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GNBP1 as a potential RNAi target to enhance the virulence of Beauveria bassiana for aphid control

Chao Ye, Zheng-Wu Wang, Yuan-Lan Sheng, Zi-Guo Wang, Guy Smagghe (UGent) , Olivier Christiaens (UGent) , Jinzhi Niu and Jin-Jun Wang

(2022) JOURNAL OF PEST SCIENCE. 95(1). p.87-100
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Proteomics-based characterization of ISG15 signaling in host defense mechanisms against microbial infection

Fabien Henri Thery (UGent)

(2022)
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Chemical composition of five Tunisian Pinus Species' essential oils and effect of their blends on Otitis infection

Elaissi Ameur, Moumni Essahli Sarra, Khtatfa Takoua, Kouja Mariem, Abid Nabil, Frederic Lynen (UGent) and Khouja Mohamed Larbi

(2022) INDUSTRIAL CROPS AND PRODUCTS. 180.
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Influence of Mycoplasma hyopneumoniae natural infection on the respiratory microbiome diversity of finishing pigs

Karina Sonalio (UGent) , Henrique M. S. Almeida, Marina L. Mechler-Dreibi, Gabriel Y. Storino, Freddy Haesebrouck (UGent) , Dominiek Maes (UGent) and Luis Guilherme de Oliveira

(2022) VETERINARY RESEARCH. 53(1).
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The effect of amino acids on production of SCFA and bCFA by members of the porcine colonic microbiota

Pieter Van den Abbeele (UGent) , Jonas Ghyselinck, Massimo Marzorati (UGent) , Anna-Maria Koch, William Lambert, Joris Michiels (UGent) and Tristan Chalvon-Demersay

(2022) MICROORGANISMS. 10(4).

High-throughput assays to identify archaea-targeting nitrification inhibitors

Geology defines microbiome structure and composition in nunataks and valleys of the Sør Rondane Mountains, East Antarctica

MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Above- and belowground composition and diversity of subtropical plantations and their relationships with soil nutrient stocks

The dogma of the sterile uterus revisited : does microbial seeding occur during fetal life in humans and animals?

The immunostimulatory activity of sea spray aerosols : bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells

Antibiofilm activity of Prevotella species from the cystic fibrosis lung microbiota against Pseudomonas aeruginosa

Addition of (bio)surfactants in the biofiltration of hydrophobic volatile organic compounds in air

Unlocking the mechanism of action : a cost-effective flow cytometry approach for accelerating antimicrobial drug development

Co-supplementation of baobab fiber and arabic gum synergistically modulates the in vitro human gut microbiome revealing complementary and promising prebiotic properties

The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome

Environmental monitoring of a freezing tunnel and its close surroundings in the potato processing industry : insights into Listeria monocytogenes contamination, cleaning and disinfection efficacy, and transmission risks

Nitrogen and me : how little did we, and do we know about 'stikstof - azote - nitrogen'?

Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria

Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Phage lysins for intestinal microbiome modulation : current challenges and enabling techniques

Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Challenging the hypothesis of in utero microbiota acquisition in healthy canine and feline pregnancies at term : preliminary data

Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 synergistically boost butyrate levels upon tributyrin administration ex vivo

Combining phages and antibiotic to enhance antibiofilm efficacy against an in vitro dual species wound biofilm

Smart living biomaterials : development of a mycelium-bacteria cocultivation platform to engineer material functionalities

Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms - an example from dairy isolates

Beneficial microbes to suppress Vibrio and improve the culture performance of copepod Tigriopus japonicus Mori

Optimizing control strategies for urine nitrification : narrow pH control band enhances process stability and reduces nitrous oxide emissions

Capacity of a microbial synbiotic to rescue the in vitro metabolic activity of the gut microbiome following perturbation with alcohol or antibiotics

Probiotics for oral health: do they deliver what they promise?

Flow cytometry for on-line microbial regrowth monitoring in a membrane filtration plant : pilot-scale case study for wastewater reuse

Bioaugmentation of a structural extracellular polymeric substance (EPS) producer to improve activated sludge bioflocculation : lessons learned

Gluconic acid improves performance of newly weaned piglets associated with alterations in gut microbiome and fermentation

Sulphate reduction, mixed sulphide- and thiosulphate-driven Autotrophic denitrification, NItrification, and Anammox (SANIA) integrated process for sustainable wastewater treatment

Enhancing microbial salt tolerance through low-voltage stimulation for improved p-chloronitrobenzene (p-CNB) removal in high-salinity wastewater

Bacteria involved in 128 septic foals and their antimicrobial resistance

The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur

Novel endophytic Pseudescherichia sp. GSE25 strain significantly controls Fusarium graminearum and reduces deoxynivalenol in Wheat

Klinische aanpak van puppysterfte bij de hond

Warming and nutrient enrichment can trigger seaweed loss by dysregulation of the microbiome structure and predicted function

Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome

Bacterial responses to plant antimicrobials : the case of alkannin and shikonin derivatives

Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov

Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

Microbial life strategy with high rRNA operon copy number facilitates the energy and nutrient flux in anaerobic digestion

GNBP1 as a potential RNAi target to enhance the virulence of Beauveria bassiana for aphid control

Proteomics-based characterization of ISG15 signaling in host defense mechanisms against microbial infection

Chemical composition of five Tunisian Pinus Species' essential oils and effect of their blends on Otitis infection

Influence of Mycoplasma hyopneumoniae natural infection on the respiratory microbiome diversity of finishing pigs

The effect of amino acids on production of SCFA and bCFA by members of the porcine colonic microbiota