Ghent University Academic Bibliography

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Digital PCR in virology : current applications and future perspectives

David Gleerup (UGent) , Wim Trypsteen (UGent) , Stephanie I. Fraley and Ward De Spiegelaere (UGent)

(2025) MOLECULAR DIAGNOSIS & THERAPY. 29. p.43-54
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Is the stability of folates in dried blood microsamples sufficient to perform home-sampling studies?

Liesl Heughebaert (UGent) and Christophe Stove (UGent)

(2024) ANALYST. 149(3). p.895-908
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Phenotypic and genotypic assessment of iron acquisition in diverse bovine-associated non-aureus staphylococcal strains

Helena Reydams (UGent) , Bruno Toledo-Silva (UGent) , Kristien Mertens (UGent) , Sofie Piepers (UGent) , Nick Vereecke (UGent) , Fernando Nogueira De Souza (UGent) , Freddy Haesebrouck (UGent) and Sarne De Vliegher (UGent)

(2024) VETERINARY RESEARCH. 55(1).
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Validation of a targeted LC-MS/MS method for cereulide and application in food and faeces

Julien Masquelier, Céline Segers, Bram Jacobs (UGent) , Tom Van Nieuwenhuysen, Laurence Delbrassinne and Els Van Hoeck

(2024) TOXINS. 16(1).
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Cytokinin oxidase/dehydrogenase inhibitors : progress towards agricultural practice

Jaroslav Nisler, Pavel Klimeš, Radka Končitíková, Alena Kadlecová, Jiří Voller, Mahfam Chalaki, Michael Karampelias, Nino Murvanidze, Stefaan Werbrouck (UGent) , David Kopečný, et al.

(2024) JOURNAL OF EXPERIMENTAL BOTANY. 75(16). p.4873-4890
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The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Chao Wang (UGent) , Tom Defoirdt (UGent) and Andreja Rajkovic (UGent)

(2024) JOURNAL OF APPLIED MICROBIOLOGY. 135(4).
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Unlocking protein-protein interactions in plants : a comprehensive review of established and emerging techniques

Álvaro Furones Cuadrado (UGent) and Daniël Van Damme (UGent)

(2024) JOURNAL OF EXPERIMENTAL BOTANY. 75(17). p.5220-5236
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Clostridium perfringens chitinases, key enzymes during early stages of necrotic enteritis in broiler chickens

Evelien Dierick (UGent) , Chana Callens (UGent) , Yehudi Bloch (UGent) , Savvas Savvides (UGent) , Sarah Hark, Stefan Pelzer, Richard Ducatelle (UGent) , Filip Van Immerseel (UGent) and Evy Goossens (UGent)

(2024) PLOS PATHOGENS. 20(9).
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Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification

Bart Van Puyvelde (UGent) , Christie L. Hunter, Maxim Zhgamadze, Sudha Savant, Y. Oliver Wang, Esthelle Hoedt, Koen Raedschelders, Matt Pope, Carissa A. Huynh, V. Krishnan Ramanujan, et al.

(2024) NATURE COMMUNICATIONS. 15(1).
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A targeted LC-MRM3 proteomic approach for the diagnosis of SARS-CoV-2 infection in nasopharyngeal swabs

Nicolas Drouin, Hyung L. Elfrink, Stefan A. Boers, Sam van Hugten, Els Wessels, Jutte J.C. de Vries, Geert H. Groeneveld, Paul Miggiels, Bart Van Puyvelde (UGent) , Maarten Dhaenens (UGent) , et al.

(2024) MOLECULAR & CELLULAR PROTEOMICS. 23(7).
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Comparison of DeNovix, NanoDrop and Qubit for DNA quantification and impurity detection of bacterial DNA extracts

Nick Versmessen (UGent) , Leen Van Simaey (UGent) , Abel Abera Negash, Marjolein Vandekerckhove, Paco Hulpiau, Mario Vaneechoutte (UGent) and Piet Cools (UGent)

(2024) PLOS ONE. 19(6).
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Premature farrowing and stillbirths in two organic sow farms due to riboflavin deficiency

Camilla Torreggiani, Dominiek Maes (UGent) , Luigi Franchi, Valeria Raffi, Elena Borri, Alice Prosperi, Chiara Chiapponi and Andrea Luppi

(2023) PORCINE HEALTH MANAGEMENT. 9(1).
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Application of a fully automated dried blood spot method for therapeutic drug monitoring of immunosuppressants

Sigrid Deprez (UGent) and Christophe Stove (UGent)

(2023) ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE. 147(7). p.786-796
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Detection of Chlamydia and Chlamydia‐like organisms in bovine placental tissue

Hans Van Loo (UGent) , Osvaldo Américo Bogado Pascottini (UGent) , Stefaan Ribbens, Jozef Hooyberghs, Marcella Mori, Daisy Vanrompay (UGent) , Geert Opsomer (UGent) and Bart Pardon (UGent)

(2023) REPRODUCTION IN DOMESTIC ANIMALS. 58(8). p.1080-1086
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A robust pipeline for high-content, high-throughput immunophenotyping reveals age- and genetics-dependent changes in blood leukocytes

Thomas Liechti, Sofie Van Gassen (UGent) , Margaret Beddall, Reid Ballard, Yaser Iftikhar, Renguang Du, Thiagarajan Venkataraman, David Novák (UGent) , Massimo Mangino, Stephen Perfetto, et al.

(2023) CELL REPORTS METHODS. 3(10).
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The plant growth-promoting potential of halotolerant bacteria is not phylogenetically determined : evidence from two Bacillus megaterium strains isolated from saline soils used to grow wheat

Sylia Ait Bessai, Joana Cruz, Pablo Carril, Juliana Melo, Margarida M. Santana, Abdul Mouazen (UGent) , Cristina Cruz, Ajar Nath Yadav, Teresa Dias and El-hafid Nabti

(2023) MICROORGANISMS. 11(7).
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Detection of Fusarium oxysporum f.sp. lactucae race 1 and 4 via race-specific real-time PCR and target enrichment

Hanna Mestdagh (UGent) , Kris Van Poucke, Annelies Haegeman, Tinne Dockx, Isabel Vandevelde, Ellen Dendauw, An Decombel, Monica Höfte (UGent) and Kurt Heungens

(2023) FRONTIERS IN PLANT SCIENCE. 14.
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On-line coupling of aptamer affinity solid-phase extraction and immobilized enzyme microreactor capillary electrophoresis-mass spectrometry for the sensitive targeted bottom-up analysis of protein biomarkers

Hiba Salim, Roger Peró Gascón (UGent) , Estela Giménez and Fernando Benavente

(2022) ANALYTICAL CHEMISTRY. 94(19). p.6948-6956
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Positioning of myositis-specific and associated autoantibody (MSA/MAA) testing in disease criteria and routine diagnostic work-up

Carolien Bonroy (UGent) , Yves Piette (UGent) , Yves Allenbach, Xavier Bossuyt and Jan Damoiseaux

(2022) JOURNAL OF TRANSLATIONAL AUTOIMMUNITY. 5.
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Innovative rhizosphere-based enrichment under P-limitation selects for bacterial isolates with high-performance P-solubilizing traits

Noémie De Zutter (UGent) , Maarten Ameye (UGent) , Pieter Vermeir (UGent) , Jan Verwaeren (UGent) , Leen De Gelder (UGent) and Kris Audenaert (UGent)

(2022) MICROBIOLOGY SPECTRUM. 10(6).
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A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

Sigrid Verhelst (UGent) , Bart Van Puyvelde (UGent) , Sander Willems, Simon Daled (UGent) , Senne Cornelis (UGent) , Laura Corveleyn (UGent) , Ewoud Willems, Dieter Deforce (UGent) , Laura De Clerck (UGent) and Maarten Dhaenens (UGent)

(2022) SCIENTIFIC REPORTS. 12(1).
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Semiquantitative interpretation of anticardiolipin and antiβ2glycoprotein I antibodies measured with various analytical platforms : communication from the ISTH SSC subcommittee on lupus anticoagulant/antiphospholipid antibodies

Arne Vandevelde (UGent) , Walid Chayoua, Bas de Laat, Jean‐Christophe Gris, Gary W. Moore, Jacek Musiał, Stéphane Zuily, Denis Wahl and Katrien Devreese (UGent)

(2022) JOURNAL OF THROMBOSIS AND HAEMOSTASIS. 20(2). p.508-524
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CRISPR-powered microfluidics in diagnostics : a review of main applications

Mostafa Azimzadeh, Marziyeh Mousazadeh, Atieh Jahangiri-Manesh, Pouria Khashayar and Patricia Khashayar (UGent)

(2022) CHEMOSENSORS. 10(1).
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Accuracy and effectiveness of HPV mRNA testing in cervical cancer screening : a systematic review and meta-analysis

Marc Arbyn (UGent) , Marie Simon, Silvia de Sanjose, Megan A. Clarke, Mario Poljak, Remila Rezhake, Johannes Berkhof, Victoria Nyaga, Murat Gultekin, Karen Canfell, et al.

(2022) LANCET ONCOLOGY. 23(7). p.950-960
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Essential descriptors for mycotoxin contamination data in food and feed

Addisalem Mesfin Muhiye (UGent) , Carl Lachat (UGent) , Arnau Vidal Corominas (UGent) , Siska Croubels (UGent) , Geert Haesaert (UGent) , Melody Ndemera, Sheila Okoth, Tefera Belachew, Marthe De Boevre (UGent) , Sarah De Saeger (UGent) , et al.

(2022) FOOD RESEARCH INTERNATIONAL. 152.
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Sunflower bark extract as a biostimulant suppresses reactive oxygen species in salt-stressed Arabidopsis

Jing Li (UGent) , Philippe Evon, Stephane Ballas, Hoang Khai Trinh (UGent) , Lin Xu (UGent) , Christof Van Poucke, Bart Van Droogenbroeck, Pierfrancesco Motti (UGent) , Sven Mangelinckx (UGent) , Aldana Ramirez (UGent) , et al.

(2022) FRONTIERS IN PLANT SCIENCE. 13.
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Recent advances in electrochemical monitoring of zearalenone in diverse matrices

Esther De Rycke (UGent) , Astrid Foubert, Peter Dubruel (UGent) , Oleg I. Bol'hakov, Sarah De Saeger (UGent) and Natalia Beloglazova (UGent)

(2021) FOOD CHEMISTRY. 353.
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2-((3,5-Dinitrobenzyl)thio)quinazolinones : potent antimycobacterial agents activated by deazaflavin (F420)-dependent nitroreductase (Ddn)

Yanlin Jian, He Eun Forbes, Fabian Hulpia (UGent) , Martijn Risseeuw (UGent) , Guy Caljon, Hélène Munier-Lehmann, Helena I. M. Boshoff and Serge Van Calenbergh (UGent)

(2021) JOURNAL OF MEDICINAL CHEMISTRY. 64(1). p.440-457
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Deazapurine nucleoside analogues for the treatment of Trichomonas vaginalis

Manal J. Natto, Fabian Hulpia (UGent) , Eric R. Kalkman, Susan Baillie, Amani Alhejeli, Yukiko Miyamoto, Lars Eckmann, Serge Van Calenbergh (UGent) and Harry P. de Koning

(2021) ACS INFECTIOUS DISEASES. 7(6). p.1752-1764
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Evaluation of the new American Urological Association guidelines risk classification for hematuria

Solomon L. Woldu, Casey K. Ng, Ronald K. Loo, Jeff M. Slezak, Steven J. Jacobsen, Wei Shen Tan, John D. Kelly, Tony Lough, David Darling, Kim E. M. van Kessel, et al.

(2021) JOURNAL OF UROLOGY. 205(5). p.1387-1392
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Evaluation of HarmoniaHPV test for detection of clinically significant human papillomavirus infection using the VALGENT framework

Ramya Bhatia, Elia Alcaniz Boada, Jesper Bonde, Wim Quint, Irene Kraus Christiansen, Lan Xu, Ditte Moller Ejegod, Sharon Moncur, Kate Cuschieri and Marc Arbyn (UGent)

(2021) JOURNAL OF VIROLOGICAL METHODS. 294.
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Fully automated dried blood spot extraction coupled to liquid chromatography-tandem mass spectrometry for therapeutic drug monitoring of immunosuppressants

Sigrid Deprez (UGent) and Christophe Stove (UGent)

(2021) JOURNAL OF CHROMATOGRAPHY A. 1653.
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Quantification of eight hematological tyrosine kinase inhibitors in both plasma and whole blood by a validated LC-MS/MS method

Nick Verougstraete (UGent) , Veronique Stove (UGent) , Alain Verstraete (UGent) and Christophe Stove (UGent)

(2021) TALANTA. 226.
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Lectins applied to diagnosis and treatment of prostate cancer and benign hyperplasia : a review

Benildo Sousa Cavada, Messias Vital Oliveira, Vinicius Jose Da Silva Osterne (UGent) , Vanir Reis Pinto-Junior, Cornevile Correia-Neto and Kyria Santiago Nascimento

(2021) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. 190. p.543-553
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Challenges encountered when evaluating an antibody-detecting point-of-care test for taeniosis in an endemic community in Zambia : a prospective diagnostic accuracy study

Chishimba Mubanga, Chiara Trevisan (UGent) , Inge Van Damme (UGent) , Veronika Schmidt, Isaac K. Phiri, Gideon Zulu, John Noh, Sukwan Handali, Richard Mambo, Mwelwa Chembensofu, et al.

(2021) DIAGNOSTICS. 11(11).
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Deciphered coagulation profile to diagnose the antiphospholipid syndrome using artificial intelligence

Romy M.W. de Laat - Kremers, Denis Wahl, Stéphane Zuily, Marisa Ninivaggi, Walid Chayouâ, Véronique Regnault, Jacek Musial, Philip G. de Groot, Katrien Devreese (UGent) and Bas de Laat

(2021) THROMBOSIS RESEARCH. 203. p.142-151
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International multicenter, multiplatform study to validate Taipan snake venom time as a lupus anticoagulant screening test with ecarin time as the confirmatory test : communication from the ISTH SSC Subcommittee on Lupus Anticoagulant/Antiphospholipid Antibodies

Gary W. Moore, Paul O. Jones, Sean Platton, Nadia Hussain, Danielle White, Will Thomas, Joseph Rigano, Claire Pouplard, Elaine Gray and Katrien Devreese (UGent)

(2021) JOURNAL OF THROMBOSIS AND HAEMOSTASIS. 19(12). p.3177-3192
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Receptor density influences ligand-induced dopamine D2L receptor homodimerization

Mattia Ferraiolo, Hicham Atik, Romane Ponthot, Ines Belo do Nascimento, Pauline Beckers, Christophe Stove (UGent) and Emmanuel Hermans

(2021) EUROPEAN JOURNAL OF PHARMACOLOGY. 911.
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Protective efficacy of recombinant influenza hemagglutinin ectodomain fusions

Nidhi Mittal, Nayanika Sengupta, Sameer Kumar Malladi, Poorvi Reddy, Madhuraj Bhat, Raju S. Rajmani, Koen Sedeyn (UGent) , Xavier Saelens (UGent) , Somnath Dutta and Raghavan Varadarajan

(2021) VIRUSES-BASEL. 13(9).
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A viability quantitative PCR dilemma : are longer amplicons better?

Wannes Van Holm (UGent) , Justien Ghesquiere, Nico Boon (UGent) , Tim Verspecht, Kristel Bernaerts, Naiera Zayed, Ioanna Chatzigiannidou and Wim Teughels

(2021) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 87(5).
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Impact of functional studies on exome sequence variant interpretation in early-onset cardiac conduction system diseases

Kenshi Hayashi, Ryota Teramoto, Akihiro Nomura, Yoshihiro Asano, Manu Beerens, Yasutaka Kurata, Isao Kobayashi, Noboru Fujino, Hiroshi Furusho, Kenji Sakata, et al.

(2020) CARDIOVASCULAR RESEARCH. 116(13). p.2116-2130
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Development of an automated flow-based spectrophotometric immunoassay for continuous detection of zearalenone

Jongjit Jantra, Kinga Zor, Melanie Sanders (UGent) , Sarah De Saeger (UGent) , Martin Hedstrom and Bo Mattiasson

(2020) BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY. 67(3). p.375-382
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Design and synthesis of novel ferrocene-quinoline conjugates and evaluation of their electrochemical and antiplasmodium properties

Aleksandra Minić (UGent) , Tim Van de Walle, Kristof Van Hecke (UGent) , Jill Combrinck, Peter J. Smith, Kelly Chibale and Matthias D'hooghe (UGent)

(2020) EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY. 187.
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Kinship analysis on single cells after whole genome amplification

Jana Weymaere, Ann-Sophie Vander Plaetsen, Laurentijn Tilleman (UGent) , Olivier Tytgat, Kaat Rubben (UGent) , Sofie Geeraert, Dieter Deforce (UGent) and Filip Van Nieuwerburgh (UGent)

(2020) SCIENTIFIC REPORTS. 10(1).
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Synthesis and biological evaluation of novel quinoline-piperidine scaffolds as antiplasmodium agents

Tim Van de Walle, Maya Boone (UGent) , Julie Van Puyvelde, Jill Combrinck, Peter J. Smith, Kelly Chibale, Sven Mangelinckx (UGent) and Matthias D'hooghe (UGent)

(2020) EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY. 198.
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Engineering of cellobiose phosphorylase for the defined synthesis of cellotriose

Zorica Ubiparip, David Sáez Moreno, Koen Beerens (UGent) and Tom Desmet (UGent)

(2020) APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 104(19). p.8327-8337
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Improving pediatric TB diagnosis in North Kivu (DR Congo), focusing on a clinical algorithm including targeted Xpert MTB/RIF on gastric aspirates

DAAN VAN BRUSSELEN, Erica Simons, Tony Luendo, Delphine Habarugira, Jimmy Ngowa, Nadine Neema Mitutso, Zakari Moluh, Mieke Steenssens, Rachelle Seguin, Hilde Vochten, et al.

(2020) CONFLICT AND HEALTH. 14(1).
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A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

Mathieu Gand, Wesley Mattheus, Nancy Roosens, Katelijne Dierick, Kathleen Marchal (UGent) , Sophie Bertrand and Sigrid C. J. De Keersmaecker

(2020) FOOD MICROBIOLOGY. 91.
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Detection of Ascaris lumbricoides infection by ABA-1 coproantigen ELISA

Ole Lagatie, Ann Verheyen, Kim Van Hoof, Dax Lauwers, Maurice R. Odiere, Johnny Vlaminck (UGent) , Bruno Levecke (UGent) and Lieven J. Stuyver

(2020) PLOS NEGLECTED TROPICAL DISEASES. 14(10).
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Occurrence of Taenia species in pigs in slaughterhouses in Phu Tho province, northern Vietnam

Thi Thuy Minh Nguyen, Veronique Dermauw, J. Noh, N.H. Chien, T.T.H. Dao, T.G.T. Nguyen, A. Van Hul and Pierre Dorny (UGent)

(2020) JOURNAL OF HELMINTHOLOGY. 94.

Digital PCR in virology : current applications and future perspectives

Is the stability of folates in dried blood microsamples sufficient to perform home-sampling studies?

Phenotypic and genotypic assessment of iron acquisition in diverse bovine-associated non-aureus staphylococcal strains

Validation of a targeted LC-MS/MS method for cereulide and application in food and faeces

Cytokinin oxidase/dehydrogenase inhibitors : progress towards agricultural practice

The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Unlocking protein-protein interactions in plants : a comprehensive review of established and emerging techniques

Clostridium perfringens chitinases, key enzymes during early stages of necrotic enteritis in broiler chickens

Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification

A targeted LC-MRM3 proteomic approach for the diagnosis of SARS-CoV-2 infection in nasopharyngeal swabs

Comparison of DeNovix, NanoDrop and Qubit for DNA quantification and impurity detection of bacterial DNA extracts

Premature farrowing and stillbirths in two organic sow farms due to riboflavin deficiency

Application of a fully automated dried blood spot method for therapeutic drug monitoring of immunosuppressants

Detection of Chlamydia and Chlamydia‐like organisms in bovine placental tissue

A robust pipeline for high-content, high-throughput immunophenotyping reveals age- and genetics-dependent changes in blood leukocytes

The plant growth-promoting potential of halotolerant bacteria is not phylogenetically determined : evidence from two Bacillus megaterium strains isolated from saline soils used to grow wheat

Detection of Fusarium oxysporum f.sp. lactucae race 1 and 4 via race-specific real-time PCR and target enrichment

On-line coupling of aptamer affinity solid-phase extraction and immobilized enzyme microreactor capillary electrophoresis-mass spectrometry for the sensitive targeted bottom-up analysis of protein biomarkers

Positioning of myositis-specific and associated autoantibody (MSA/MAA) testing in disease criteria and routine diagnostic work-up

Innovative rhizosphere-based enrichment under P-limitation selects for bacterial isolates with high-performance P-solubilizing traits

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

Semiquantitative interpretation of anticardiolipin and antiβ2glycoprotein I antibodies measured with various analytical platforms : communication from the ISTH SSC subcommittee on lupus anticoagulant/antiphospholipid antibodies

CRISPR-powered microfluidics in diagnostics : a review of main applications

Accuracy and effectiveness of HPV mRNA testing in cervical cancer screening : a systematic review and meta-analysis

Essential descriptors for mycotoxin contamination data in food and feed

Sunflower bark extract as a biostimulant suppresses reactive oxygen species in salt-stressed Arabidopsis

Recent advances in electrochemical monitoring of zearalenone in diverse matrices

2-((3,5-Dinitrobenzyl)thio)quinazolinones : potent antimycobacterial agents activated by deazaflavin (F420)-dependent nitroreductase (Ddn)

Deazapurine nucleoside analogues for the treatment of Trichomonas vaginalis

Evaluation of the new American Urological Association guidelines risk classification for hematuria

Evaluation of HarmoniaHPV test for detection of clinically significant human papillomavirus infection using the VALGENT framework

Fully automated dried blood spot extraction coupled to liquid chromatography-tandem mass spectrometry for therapeutic drug monitoring of immunosuppressants

Quantification of eight hematological tyrosine kinase inhibitors in both plasma and whole blood by a validated LC-MS/MS method

Lectins applied to diagnosis and treatment of prostate cancer and benign hyperplasia : a review

Challenges encountered when evaluating an antibody-detecting point-of-care test for taeniosis in an endemic community in Zambia : a prospective diagnostic accuracy study

Deciphered coagulation profile to diagnose the antiphospholipid syndrome using artificial intelligence

International multicenter, multiplatform study to validate Taipan snake venom time as a lupus anticoagulant screening test with ecarin time as the confirmatory test : communication from the ISTH SSC Subcommittee on Lupus Anticoagulant/Antiphospholipid Antibodies

Receptor density influences ligand-induced dopamine D2L receptor homodimerization

Protective efficacy of recombinant influenza hemagglutinin ectodomain fusions

A viability quantitative PCR dilemma : are longer amplicons better?

Impact of functional studies on exome sequence variant interpretation in early-onset cardiac conduction system diseases

Development of an automated flow-based spectrophotometric immunoassay for continuous detection of zearalenone

Design and synthesis of novel ferrocene-quinoline conjugates and evaluation of their electrochemical and antiplasmodium properties

Kinship analysis on single cells after whole genome amplification

Synthesis and biological evaluation of novel quinoline-piperidine scaffolds as antiplasmodium agents

Engineering of cellobiose phosphorylase for the defined synthesis of cellotriose

Improving pediatric TB diagnosis in North Kivu (DR Congo), focusing on a clinical algorithm including targeted Xpert MTB/RIF on gastric aspirates

A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium

Detection of Ascaris lumbricoides infection by ABA-1 coproantigen ELISA

Occurrence of Taenia species in pigs in slaughterhouses in Phu Tho province, northern Vietnam