Ghent University Academic Bibliography

Journal Article
A1
open access

Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production

Inés Pradal, Víctor González-Alonso, Yohanes Raditya Wardhana, Margo Cnockaert (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Luc De Vuyst

(2024) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 411.

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Journal Article
A1
open access

Microbial ecology and metabolite dynamics of backslopped triticale sourdough productions and the impact of scale

Victor Gonzalez-Alonso, Ines Pradal, Yohanes Raditya Wardhana, Margo Cnockaert (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Luc De Vuyst

(2024) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 408.

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Journal Article
A1
open access

The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing

Susana Endah Ratnawati (UGent) , Lotta Kuuliala (UGent) , Nele Verschuere (UGent) , Margo Cnockaert (UGent) , Peter Vandamme (UGent) and Frank Devlieghere (UGent)

(2024) FOOD MICROBIOLOGY. 118.

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Miscellaneous
open access

Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De Waele (UGent) , Gerben Menschaert (UGent) , Peter Vandamme (UGent) and Willem Waegeman (UGent)

(2024)

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A comparative genomic analysis of Fructobacillus evanidus sp. nov. from bumble bees

Juliana Botero Cardona (UGent) , Charlotte Peeters (UGent) , Evelien De Canck (UGent) , David Laureys (UGent) , Anneleen Wieme (UGent) , Ilse Cleenwerck (UGent) , Eliza Depoorter (UGent) , Jessy Praet (UGent) , Denis Michez, Guy Smagghe (UGent) , et al.

(2024) SYSTEMATIC AND APPLIED MICROBIOLOGY. 47(2-3).

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Conference Paper

Volatile organic compounds associated with spoilage bacteria isolated from blue mussels (Mytilus edulis) packed under modified atmospheres

Susana Endah Ratnawati (UGent) , Lotta Kuuliala (UGent) , Margo Cnockaert (UGent) , Peter Vandamme (UGent) , Christophe Walgraeve (UGent) , Kristof Demeestere (UGent) and Frank Devlieghere (UGent)

(2024)

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Journal Article
A1
open access

Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Stephanie Steyaert (UGent) , Charlotte Peeters (UGent) , Anneleen Wieme (UGent) , Astrid Muyldermans, Kristof Vandoorslaer, Theodore Spilker, Ingrid Wybo, Denis Piérard, John J. LiPuma and Peter Vandamme (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(6).

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Journal Article
A1
open access

Eupransor demetentiae gen. nov., sp. nov., a novel fructophilic lactic acid bacterium from bumble bees

Juliana Botero Cardona (UGent) , Charlotte Peeters (UGent) , Evelien De Canck (UGent) , David Laureys (UGent) and Peter Vandamme (UGent)

(2024) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 74(6).

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Journal Article
A2
open access

A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont

Juliana Botero Cardona (UGent) , Atena Sadat Sombolestani (UGent) , Margo Cnockaert (UGent) , Charlotte Peeters (UGent) , Wim Borremans, Luc De Vuyst, Nicolas J. Vereecken, Denis Michez, Guy Smagghe, German Bonilla-Rosso, et al.

(2023) ANIMAL MICROBIOME. 5(1).

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Aristophania vespae gen. nov., sp. nov., isolated from wasps, is related to Bombella and Oecophyllibacter, isolated from bees and ants

Juan Guzman, Miyoung Won, Anja Poehlein, Atena Sadat Sombolestani (UGent) , Daniela Mayorga-Ch, David Laureys (UGent) , Jessika De Clippeleer (UGent) , Peter Kämpfer, Rolf Daniel, Andreas Vilcinskas, et al.

(2023) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 73(2).

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Journal Article
A1
open access

Convivina is a specialised core gut symbiont of the invasive hornet Vespa velutina

Gowri Amanda Hettiarachchi (UGent) , Margo Cnockaert (UGent) , Marie Joossens (UGent) , David Laureys (UGent) , Jessika De Clippeleer (UGent) , Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) , Dirk de Graaf (UGent) and Peter Vandamme (UGent)

(2023) INSECT MOLECULAR BIOLOGY. 32(5). p.510-527

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Journal Article
A1
open access

Microbiota and pathogens in an invasive bee : Megachile sculpturalis from native and invaded regions

Tina Tuerlings (UGent) , Gowri Amanda Hettiarachchi (UGent) , Marie Joossens (UGent) , Benoit Geslin, Nicolas J. J. Vereecken, Denis Michez, Guy Smagghe (UGent) and Peter Vandamme (UGent)

(2023) INSECT MOLECULAR BIOLOGY. 32(5). p.544-557

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Journal Article
A1
open access

The GEN-ERA toolbox : unified and reproducible workflows for research in microbial genomics

Luc Cornet, Benoit Durieu, Frederik Baert, Elizabet D'hooge, David Colignon, Loic Meunier, Valérian Lupo, Ilse Cleenwerck (UGent) , Heide-Marie Daniel, Leen Rigouts, et al.

(2023) GIGASCIENCE. 12. p.1-10

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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels, Monique Blignaut, Guillaume Marti, Simon Sieber, Peter Vandamme (UGent) , Marion Meyer and Aurélien Carlier (UGent)

(2023) ENVIRONMENTAL MICROBIOLOGY. 25(2). p.454-472

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Journal Article
A1
open access

Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages

Atena Sadat Sombolestani (UGent) , Dries Bongaerts (UGent) , Eliza Depoorter (UGent) , Ilse Cleenwerck (UGent) , Anneleen Wieme (UGent) , Scott J. Britton, Stefan Weckx, Luc De Vuyst and Peter Vandamme (UGent)

(2023) SYSTEMATIC AND APPLIED MICROBIOLOGY. 46(5).

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Journal Article
A1
open access

Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria

Peter Vandamme (UGent) , Charlotte Peeters (UGent) , Gowri Amanda Hettiarachchi (UGent) , Margo Cnockaert (UGent) and Aurélien Carlier (UGent)

(2023) SYSTEMATIC AND APPLIED MICROBIOLOGY. 46(3).

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Journal Article
A1
open access

The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Gowri Amanda Hettiarachchi (UGent) , Margo Cnockaert (UGent) , Marie Joossens (UGent) , Antoine Gekiere, Ivan Meeus (UGent) , Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) and Peter Vandamme (UGent)

(2023) MICROBIAL ECOLOGY. 86(4). p.3013-3026

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Journal Article
A1
open access

European bee diversity : taxonomic and phylogenetic patterns

Nicolas Leclercq, Leon Marshall, Geoffrey Caruso, Kerry Schiel, Timothy Weekers, Luisa G. Carvalheiro, Holger H. Dathe, Michael Kuhlmann, Denis Michez, Simon G. Potts, et al.

(2023) JOURNAL OF BIOGEOGRAPHY. 50(7). p.1244-1256

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Journal Article
A1
open access

New insights into the role of key microorganisms and wooden barrels during lambic beer fermentation and maturation

Louise Vermote, Jonas De Roos, Margo Cnockaert (UGent) , Peter Vandamme (UGent) , Stefan Weckx and Luc De Vuyst

(2023) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 394.

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Book Chapter

Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax

John J. LiPuma, Bart J. Currie, Robert W. Baird and Peter Vandamme (UGent)

(2023) Manual of clinical microbiology. 2. p.890-910

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Journal Article
A1
open access

A case study of the diet-microbiota-parasite interplay in bumble bees

Antoine Gekière, Maryse Vanderplanck, Gowri Amanda Hettiarachchi (UGent) , Irène Semay, Pascal Gerbaux, Denis Michez, Marie Joossens (UGent) and Peter Vandamme (UGent)

(2023) JOURNAL OF APPLIED MICROBIOLOGY. 134(12).

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In vitro susceptibility of Achromobacter species isolated from cystic fibrosis patients : a 6-year survey

Margo Olbrecht, Fedoua Echahidi, Denis Piérard, Charlotte Peeters (UGent) , Peter Vandamme (UGent) , Ingrid Wybo and Thomas Demuyser

(2023) ANTIMICROBIAL AGENTS AND CHEMOTHERAPY. 67(7).

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Journal Article
A1
open access

Intraspecific size shifts in generalist bumblebees and flowers lead to low functional consequences

Sara Reverté, Maxence Gérard, Maxime Bodson, Charlotte Descamps, Matthias Gosselin, Anne-Laure Jacquemart, Julien Louvieaux, Guy Smagghe (UGent) , Peter Vandamme (UGent) , Nicolas J. Vereecken, et al.

(2023) ECOSPHERE. 14(9).

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Potential for climate change driven spatial mismatches between apple crops and their wild bee pollinators at a continental scale

Leon Marshall, Nicolas Leclercq, Timothy Weekers, Insafe El Abdouni, Luísa G. Carvalheiro, Michael Kuhlmann, Denis Michez, Pierre Rasmont, Stuart P. M. Roberts, Guy Smagghe (UGent) , et al.

(2023) GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS. 83.

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Journal Article
A1
open access

Comparative genomic analysis of Periweissella and the characterization of novel motile species

Nanzhen Qiao, Julia Bechtner, Margo Cnockaert (UGent) , Eliza Depoorter (UGent) , Christian Diaz-Munoz, Peter Vandamme (UGent) , Luc De Vuyst and Michael G. Gänzle

(2023) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 89(10).

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Co-cultivation enhanced microbial protein production based on autotrophic nitrogen-fixing hydrogen-oxidizing bacteria

Xiaona Hu, Peter Vandamme (UGent) and Nico Boon (UGent)

(2022) CHEMICAL ENGINEERING JOURNAL. 429.

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Journal Article
A1
open access

Backslopping time, rinsing of the grains during backslopping, and incubation temperature influence the water kefir fermentation process

David Laureys (UGent) , Frédéric Leroy, Peter Vandamme (UGent) and Luc De Vuyst

(2022) FRONTIERS IN MICROBIOLOGY. 13.

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Journal Article
A1
open access

Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveal taxonomic and functional diversity

Luc Cornet, Ilse Cleenwerck (UGent) , Jessy Praet (UGent) , Raphaël R. Leonard, Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) , Denis Baurain and Peter Vandamme (UGent)

(2022) MSYSTEMS. 7(3).

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Journal Article
A1
open access

Ecological, environmental, and management data indicate apple production is driven by wild bee diversity and management practices

Timothy Weekers, Leon Marshall, Nicolas Leclercq, Thomas J. Wood, Diego Cejas, Bianca Drepper, Michael Garratt, Louise Hutchinson, Stuart Roberts, Jordi Bosch, et al.

(2022) ECOLOGICAL INDICATORS. 139.

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Journal Article
A1
open access

Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa

Caoimhe Lynch, Charlotte Peeters (UGent) , Niamh Walsh, Conor McCarthy, Aidan Coffey, Brigid Lucey and Peter Vandamme (UGent)

(2022) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 72(12).

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Miscellaneous

In memoriam : Monique Gillis (1942 - 2022)

Anne Willems (UGent) , Paul De Vos (UGent) , Jean Swings (UGent) , Karel Kersters and Peter Vandamme (UGent)

(2022) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 72(11).

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Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)

Jun Heo, Atena Sadat Sombolestani (UGent) , David Laureys (UGent) , Jessika De Clippeleer (UGent) , Miyoung Won, Peter Vandamme (UGent) and Soon-Wo Kwon

(2022) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 72(11).

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Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov. : novel aromatic compound degrading bacteria isolated from garden and forest soil samples

Sarah Vanwijnsberghe (UGent) , Charlotte Peeters (UGent) , Margo Cnockaert (UGent) , Evelien De Canck (UGent) and Peter Vandamme (UGent)

(2022) SYSTEMATIC AND APPLIED MICROBIOLOGY. 45(3).

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Dominance of honey bees is negatively associated with wild bee diversity in commercial apple orchards regardless of management practices

Timothy Weekers, Leon Marshall, Nicolas Leclercq, Thomas James Wood, Diego Cejas, Bianca Drepper, Louise Hutchinson, Denis Michez, Jean-Marc Molenberg, Guy Smagghe (UGent) , et al.

(2022) AGRICULTURE ECOSYSTEMS & ENVIRONMENT. 323.

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Journal Article
A1
open access

Description of Pseudoclavibacter triregionum sp. nov. from human blood and Pseudoclavibacter albus comb. nov., and revised classification of the genus Pseudoclavibacter : proposal of Caespitibacter gen. nov., with Caespitibacter soli comb. nov. and Caespitibacter caeni comb. nov

Peter Vandamme (UGent) , Charlotte Peeters (UGent) , Helena M. B. Seth-Smith, Hanna Schmid, Margo Cnockaert (UGent) , Adrian Egli and Daniel Goldenberger

(2022) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 115(4). p.461-472

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The exploration of microbial profiles in blue mussels (Mytilus edulis) stored under different modified atmospheres

Susana Endah Ratnawati (UGent) , Lotta Kuuliala (UGent) , Nele Verschuere (UGent) , Peter Ragaert (UGent) , Margo Cnockaert (UGent) , Peter Vandamme (UGent) and Frank Devlieghere (UGent)

(2022) EFFoST International Conference, 36th, Abstracts.

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Journal Article
A2
open access

Isolation, screening, identification and optimization of culture parameters to produce gamma-aminobutyric acid by Lactiplantibacillus pentosus R13, an isolate from ruoc (fermented shrimp paste)

Do Thi Bich Thuy, Tien-An Nguyen and Peter Vandamme (UGent)

(2022) APPLIED FOOD BIOTECHNOLOGY. 9(1). p.1-8

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Journal Article
A1
open access

A comprehensive investigation into the production of gamma-aminobutyric acid by Limosilactobacillus fermentum NG16, a tuna gut isolate

D. T. B. Thuy, N. T. An, V. Jayasena and Peter Vandamme (UGent)

(2022) ACTA ALIMENTARIA. 51(2). p.302-311

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A comparative analysis of crop pollinator survey methods along a large-scale climatic gradient

N. Leclercq, L. Marshall, T. Weekers, A. Anselmo, D. Benda, D. Bevk, P. Bogusch, D. Cejas, B. Drepper, M. Galloni, et al.

(2022) AGRICULTURE ECOSYSTEMS & ENVIRONMENT. 329.

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Journal Article
A1
open access

Introduction to the principles and methods underlying the recovery of metagenome-assembled genomes from metagenomic data

Gleb Goussarov, Mohamed Mysara, Peter Vandamme (UGent) and Rob Van Houdt

(2022) MICROBIOLOGYOPEN. 11(3).

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Isolation and identification of a Bacillus sp. from freshwater sediment displaying potent activity against bacteria and phytopathogen fungi

Miladis I. Camacho, Janet M. García, Dianelis Roget, Armando Ferrer, Anneleen Wieme (UGent) , Peter Vandamme (UGent) , Suyén Rodríguez, Gabriel Llauradó, Yaneisy Lescaylle, Leonor Peña, et al.

(2022) CURRENT MICROBIOLOGY. 79(12).

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Outbreak of Burkholderia contaminans endophthalmitis traced to a clinic ventilation system

Theodore Spilker, Jens Kratholm, Eliza Depoorter (UGent) , Peter Vandamme (UGent) and John J. LiPuma

(2022) INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY. 43(11). p.1705-1707

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Conference Paper
C3
open access

Isolation and preliminary characterisation of wild yeasts isolated from natural niches for non- and low alcoholic beer production

Arne Demeester, David Laureys (UGent) , Anneleen Wieme (UGent) , Peter Vandamme (UGent) and Jessika De Clippeleer (UGent)

(2022) 38th Congress of the European Brewery Convention (EBC 2022), Abstracts.

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Journal Article
A1
open access

Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics

Gleb Goussarov, Jürgen Claesen, Mohamed Mysara, Ilse Cleenwerck (UGent) , Natalie Leys, Peter Vandamme (UGent) and Rob Van Houdt

(2022) ENVIRON MICROBIOME. 17(1).

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Journal Article
A1
open access

Signals of adaptation to agricultural stress in the genomes of two European bumblebees

Alex Hart (UGent) , Jaro Verbeeck, Daniel Alejandro Ariza Pacheco (UGent) , Diego Cejas, Guillaume Ghisbain, Hanna Honchar, Vladimir G. Radchenko, Jakub Straka, Toshko Ljubomirov, Thomas Lecocq, et al.

(2022) FRONTIERS IN GENETICS. 13.

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Journal Article
A2
open access

Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients

Frits van Charante, Anneleen Wieme (UGent) , Petra Rigole (UGent) , Evelien De Canck (UGent) , Lisa Ostyn (UGent) , Lucia Grassi (UGent) , Dieter Deforce (UGent) , Aurélie Crabbé (UGent) , Peter Vandamme (UGent) , Marie Joossens (UGent) , et al.

(2022) BIOFILM. 4.

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Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens

Jackeline Pereira Andrade, Harisson Guimarães de Souza, Larissa Carvalho Ferreira, Margo Cnockaert (UGent) , Evelien De Canck (UGent) , Anneleen Wieme (UGent) , Charlotte Peeters (UGent) , Eduardo Gross, Jorge Teodoro De Souza, Phellippe Arthur Santos Marbach, et al.

(2021) BRAZILIAN JOURNAL OF MICROBIOLOGY. 52. p.2145-2152

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Journal Article
A2
open access

Clinical course, treatment and visual outcome of an outbreak of Burkholderia contaminans endophthalmitis following cataract surgery

Caroline Lind, Karina Olsen, Nina K. Angelsen, Einar A. Krefting, Kristian Fossen, Kirsten Gravningen, Eliza Depoorter (UGent) , Peter Vandamme (UGent) and Geir Bertelsen

(2021) JOURNAL OF OPHTHALMIC INFLAMMATION AND INFECTION. 11(1).

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Journal Article
A1
open access

Bumblebee resilience to climate change, through plastic and adaptive responses

Kevin Maebe (UGent) , Alex Hart (UGent) , Leon Marshall, Peter Vandamme (UGent) , Nicolas J. Vereecken, Denis Michez and Guy Smagghe (UGent)

(2021) GLOBAL CHANGE BIOLOGY. 27(18). p.4223-4237

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Impact of intraspecific variation on measurements of thermal tolerance in bumble bees

Kevin Maebe (UGent) , Annelien De Baets (UGent) , Peter Vandamme (UGent) , Nicolas J. Vereecken, Denis Michez and Guy Smagghe (UGent)

(2021) JOURNAL OF THERMAL BIOLOGY. 99.