Ghent University Academic Bibliography

Your filters: cql: author exact AE00E010-1F1B-11E3-8E2C-DA9910BDE39D

Add to list
- Journal Article
- A2
- open access
Preclinical exploration of the DNA damage response pathway using the interactive neuroblastoma cell line explorer CLEAN

Jonatan Linus Gabre (UGent) , Peter Merseburger (UGent) , Arne Claeys (UGent) , Joachim Siaw (UGent) , Sarah-Lee Bekaert (UGent) , Franki Speleman (UGent) , Bengt Hallberg, Ruth H Palmer and Jimmy Van den Eynden (UGent)

(2024) NAR CANCER. 6(1).
Add to list
- Journal Article
- A1
- open access
ALK signaling primes the DNA damage response sensitizing ALK-driven neuroblastoma to therapeutic ATR inhibition

Marcus Borenäs, Ganesh Umapathy, Dan E. Lind, Wei-Yun Lai, Jikui Guan, Joel Johansson, Eva Jennische, Alexander Schmidt, Yeshwant Kurhe, Jonatan Linus Gabre (UGent) , et al.

(2024) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 121(1).
Add to list
- Journal Article
- A1
Effects of hyperthermia on cisplatin tissue penetration and gene expression in peritoneal metastases : results from a randomized trial in ovarian cancer

Jesse Demuytere (UGent) , Charlotte Carlier, Tom Van Helden (UGent) , Joke Belza (UGent) , Frank Vanhaecke (UGent) , Feifan Xie, An Vermeulen (UGent) , Joseph Weerts, Jürgen Thomale, Hannelore Denys (UGent) , et al.

(2024) BRITISH JOURNAL OF SURGERY. 111(4).
Add to list
- Miscellaneous
- open access
A systematic analysis of immune escape signals in the primary and metastatic tumor genome

Jimmy Van den Eynden (UGent)

(2023) NATURE GENETICS. 55. p.728-729
Add to list
- Journal Article
- A1
- open access
Quantification of neoantigen-mediated immunoediting in cancer evolution : letter

Arne Claeys (UGent) and Jimmy Van den Eynden (UGent)

(2023) CANCER RESEARCH. 83(6). p.971-972
Add to list
- Journal Article
- A1
- open access
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys (UGent) , Peter Merseburger (UGent) , Jasper Staut (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2023) BMC GENOMICS. 24.
Add to list
- Journal Article
- A1
- open access
ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression

Tzu-Po Chuang, Wei-Yun Lai, Jonatan Linus Gabre (UGent) , Dan E. Lind, Ganesh Umapathy, Abdulmalik A. Bokhari, Bengt Bergman, Linnea Kristenson, Fredrik B. Thorén, Anh Le, et al.

(2023) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 120(8).
Add to list
- Journal Article
- A1
- open access
Novel human-derived EML4-ALK fusion cell lines identify ribonucleotide reductase RRM2 as a target of activated ALK in NSCLC

A.A. Bokhari, W-Y. Lai, A.T. Le, J.L. Gabre, T-P. Chuang, S. Fransson, B. Bergman, A. Djos, N. Chen, T. Martinsson, et al.

(2022) LUNG CANCER. 171. p.103-114
Add to list
- Miscellaneous
- open access
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys (UGent) , Jasper Staut (UGent) , Peter Merseburger (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2022)
Add to list
- Journal Article
- A1
- open access
A clinically annotated post-mortem approach to study multi-organ somatic mutational clonality in normal tissues

Tom Luijts (UGent) , Kerryn Elliott, Joachim Siaw (UGent) , Joris Van de Velde (UGent) , Elien Beyls (UGent) , Arne Claeys (UGent) , Tim Lammens (UGent) , Erik Larsson, Wouter Willaert (UGent) , Anne Vral (UGent) , et al.

(2022) SCIENTIFIC REPORTS. 12.
Add to list
- Journal Article
- A1
- open access
Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals

Arne Claeys (UGent) , Tom Luijts (UGent) , Kathleen Marchal (UGent) and Jimmy Van den Eynden (UGent)

(2021) PLOS Genetics. 17(2).
Add to list
- Miscellaneous
- open access
Pharmacologic RNA splicing modulation : a novel mechanism to enhance neoantigen-directed anti-tumor immunity and immunotherapy response

Kerryn Elliott, Jonas Nilsson and Jimmy Van den Eynden (UGent)

(2021) SIGNAL TRANSDUCTION AND TARGETED THERAPY. 6(1).
Add to list
- Journal Article
- A1
- open access
Network-based analysis to identify drivers of metastatic prostate cancer using GoNetic

Louise de Schaetzen van Brienen (UGent) , Giles Miclotte (UGent) , Maarten Larmuseau (UGent) , Jimmy Van den Eynden (UGent) and Kathleen Marchal (UGent)

(2021) CANCERS. 13(21).
Add to list
- Journal Article
- A1
- open access
ATR inhibition enables complete tumour regression in ALK-driven NB mouse models

Joanna Szydzik, Dan E. Lind, Badrul Arefin, Yeshwant Kurhe, Ganesh Umapathy, Joachim Tetteh Siaw, Arne Claeys (UGent) , Jonatan Linus Gabre (UGent) , Jimmy Van den Eynden (UGent) , Bengt Hallberg, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
Add to list
- Journal Article
- A1
- open access
Loss of RET promotes mesenchymal identity in neuroblastoma cells

Joachim T. Siaw, Jonatan Linus Gabre (UGent) , Ezgi Uçkun, Marc Vigny, Wancun Zhang, Jimmy Van den Eynden (UGent) , Bengt Hallberg, Ruth H. Palmer and Jikui Guan

(2021) CANCERS. 13(8).
Add to list
- Journal Article
- A1
- open access
ALK ligand ALKAL2 potentiates MYCN‐driven neuroblastoma in the absence of ALK mutation

Marcus Borenäs, Ganesh Umapathy, Wei‐Yun Lai, Dan E Lind, Barbara Witek, Jikui Guan, Patricia Mendoza‐Garcia, Tafheem Masudi, Arne Claeys (UGent) , Tzu‐Po Chuang, et al.

(2021) EMBO JOURNAL. 40(3).
Add to list
- Journal Article
- A1
- open access
11q deletion or ALK activity curbs DLG2 expression to maintain an undifferentiated state in neuroblastoma

Joachim Tetteh Siaw, Niloufar Javanmardi, Jimmy Van den Eynden (UGent) , Dan Emil Lind, Susanne Fransson, Angela Martinez-Monleon, Anna Djos, Rose-Marie Sjöberg, Malin Östensson, Helena Carén, et al.

(2020) CELL REPORTS. 32(12).
Add to list
- Journal Article
- A2
- open access
Separating positional noise from neutral alignment in multicomponent statistical shape models

Emmanuel Audenaert (UGent) , Jimmy Van den Eynden (UGent) , DF de Almeida, G Steenackers, D Vandermeulen and P Claes

(2020) BONE REPORTS. 12.
Add to list
- Journal Article
- A1
Lack of detectable neoantigen depletion signals in the untreated cancer genome

Jimmy Van den Eynden (UGent) , Alejandro Jiménez-Sánchez, Martin L Miller and Erik Larsson

(2019) NATURE GENETICS. 51(12). p.1741-1748
Add to list
- Journal Article
- A1
Targeting filamin A reduces macrophage activity and atherosclerosis

Sashidar Bandaru, Chandu Ala, Reza Salimi, Murali K Akula, Matias Ekstrand, Sravani Devarakonda, Joakim Karlsson, Jimmy Van den Eynden (UGent) , Goran Bergström, Erik Larsson, et al.

(2019) CIRCULATION. 140(1). p.67-79
Add to list
- Journal Article
- A1
Phosphoproteome and gene expression profiling of ALK inhibition in neuroblastoma cell lines reveals conserved oncogenic pathways

Jimmy Van den Eynden (UGent) , Ganesh Umapathy, Arghavan Ashouri, Diana Cervantes-Madrid, Joanna Szydzik, Kristina Ruuth, Jan Koster, Erik Larsson, Jikui Guan, Ruth H Palmer, et al.

(2018) SCIENCE SIGNALING. 11(557).
Add to list
- Journal Article
- A1
- open access
The genetic structure of the Belgian population

Jimmy Van den Eynden (UGent) , Tine Descamps, Els Delporte, Nancy HC Roosens, Sigrid CJ De Keersmaecker, Vanessa De Wit, Joris Robert Vermeesch, Els Goetghebeur (UGent) , Jean Tafforeau, Stefaan Demarest, et al.

(2018) HUMAN GENOMICS. 12.
Add to list
- Journal Article
- A2
Clinical response of the novel activating ALK-I1171T mutation in neuroblastoma to the ALK inhibitor ceritinib

Jikui Guan, Susanne Fransson, Joachim Tetteh Siaw, Diana Treis, Jimmy Van den Eynden (UGent) , Damini Chand, Ganesh Umapathy, Kristina Ruuth, Petter Svenberg, Sandra Wessman, et al.

(2018) COLD SPRING HARBOR MOLECULAR CASE STUDIES. 4(4).
Add to list
- Journal Article
- A1
An antisense RNA capable of modulating the expression of the tumor suppressor microRNA-34a

Jason T Serviss, Nathanael Andrews, Jimmy Van den Eynden (UGent) , Felix Clemens Richter, Miranda Houtman, Mattias Vesterlund, Laura Schwarzmueller, Per Johnsson, Erik Larsson, Dan Grandér, et al.

(2018) CELL DEATH & DISEASE. 9(7).
Add to list
- Journal Article
- A1
Elevated pyrimidine dimer formation at distinct genomic bases underlies promoter mutation hotspots in UV-exposed cancers

Kerryn Elliott, Martin Boström, Stefan Filges, Markus Lindberg, Jimmy Van den Eynden (UGent) , Anders Ståhlberg, Anders R Clausen and Erik Larsson

(2018) PLOS GENETICS. 14(12).
Add to list
- Journal Article
- A1
Mutational signatures are critical for proper estimation of purifying selection pressures in cancer somatic mutation data when using the dN/dS metric

Jimmy Van den Eynden (UGent) and Erik Larsson

(2017) FRONTIERS IN GENETICS. 8.
Add to list
- Journal Article
- A1
Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature

Nils Johan Fredriksson, Kerryn Elliott, Stefan Filges, Jimmy Van den Eynden (UGent) , Anders Ståhlberg and Erik Larsson

(2017) PLOS GENETICS. 13(5).
Add to list
- Journal Article
- A1
Simultaneous discovery of cancer subtypes and subtype features by molecular data integration

Thanh Le Van, Matthijs van Leeuwen, Ana Carolina Elisa Fierro Gutierrez (UGent) , Dries De Maeyer (UGent) , Jimmy Van den Eynden (UGent) , Lieven Verbeke (UGent) , Luc De Raedt, Kathleen Marchal (UGent) and Siegfries Nijssen

(2016) BIOINFORMATICS. 32(17). p.i445-i454
Add to list
- Journal Article
- A1
Somatic mutation patterns in hemizygous genomic regions unveil purifying selection during tumor evolution

Jimmy Van den Eynden (UGent) , Swaraj Basu and Erik Larsson

(2016) PLOS GENETICS. 12(12).
Add to list
- Journal Article
- A1
Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events

Arghavan Ashouri, Volkan I Sayin, Jimmy Van den Eynden (UGent) , Simranjit X Singh, Thales Papagiannakopoulos and Erik Larsson

(2016) NATURE COMMUNICATIONS. 7.
Add to list
- Journal Article
- A1
- open access
SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering

Jimmy Van den Eynden (UGent) , Ana Carolina Elisa Fierro Gutierrez (UGent) , Lieven Verbeke (UGent) and Kathleen Marchal (UGent)

(2015) BMC BIOINFORMATICS. 16.
Add to list
- Conference Paper
- C3
- open access
Pathway relevance ranking for tumor samples through network-based data integration (award for Outstanding Oral Poster Presentation )

Lieven Verbeke (UGent) , Jimmy Van den Eynden (UGent) , Piet Demeester (UGent) , Kathleen Marchal (UGent) and Jan Fostier (UGent)

(2015) 23e Annual International Conference on Intelligent Systems for Molecular Biology, Abstracts.
Add to list
- Journal Article
- A1
- open access
Pathway relevance ranking for tumor samples through network-based data integration

Lieven Verbeke (UGent) , Jimmy Van den Eynden (UGent) , Ana Carolina Elisa Fierro Gutierrez (UGent) , Piet Demeester (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2015) PLOS ONE. 10(7).
Add to list
- Conference Paper
- C3
- open access
Identifying relevant pathways for different breast cancer subtypes using network based data integration

Lieven Verbeke (UGent) , AC Fierro, Jimmy Van den Eynden (UGent) , Piet Demeester (UGent) , Jan Fostier (UGent) and Kathleen Marchal (UGent)

(2013) Regulatory and Systems Genomics, 6th Annual RECOMB/ISCB conference, Abstracts.
Add to list
- Journal Article
- A1
Glycine enhances microglial intracellular calcium signaling : a role for sodium-coupled neutral amino acid transporters

Jimmy Van den Eynden (UGent) , Kristof Notelaers, Bert Brône, Daniel Janssen, Katherine Nelissen, Sheen SahebAli, Inge Smolders, Niels Hellings, Paul Steels and Jean-Michel Rigo

(2011) PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY. 461(4). p.481-491
Add to list
- Journal Article
- A1
The inhibitory neurotransmitter glycine modulates macrophage activity by activation of neutral amino acid transporters

Sofie Carmans, Jerome JA Hendriks, Kristof Thewissen, Jimmy Van den Eynden (UGent) , Piet Stinissen, Jean-Michel Rigo and Niels Hellings

(2010) JOURNAL OF NEUROSCIENCE RESEARCH. 88(11). p.2420-2430
Add to list
- Journal Article
- A1
Glycine and glycine receptor signalling in non-neuronal cells

Jimmy Van den Eynden (UGent) , Sheen Saheb Ali, Nikki Horwood, Sofie Carmans, Bert Brône, Niels Helling, Paul Steels, Robert J Harvey and Jean-Michel Rigo

(2009) FRONTIERS IN MOLECULAR NEUROSCIENCE. 2.
Add to list
- Journal Article
- A1
Dorsal unpaired median neurons of Locusta migratoria express ivermectin- and fipronil-sensitive glutamate-gated chloride channels

Daniel Janssen, Christian Derst, Roeland Buckinx, Jimmy Van den Eynden (UGent) , Jean-Michel Rigo and Emmy Van Kerkhove

(2007) JOURNAL OF NEUROPHYSIOLOGY. 97(4). p.2642-2650
Add to list
- Journal Article
- A1
A highly reliable and budget-friendly Peltier-cooled camera for biological fluorescence imaging microscopy

Koen Jolling, Martin Vandeven, Jimmy Van den Eynden (UGent) , Marcel Ameloot and Emmy Van Kerkhove

(2007) JOURNAL OF MICROSCOPY-OXFORD. 228(3). p.264-271
Add to list
- Journal Article
- A2
Axillaire stagering met de schildwachtklier bij borstkanner : onze leercurve

E Lannoey, P Neven, F Amant, Jimmy Van den Eynden (UGent) , S Stroobant, A Van Steen, C Van Ongeval, R Drijkoningen, I Vergote and MR Christiaens

(2004) TIJDSCHRIFT VOOR GENEESKUNDE. 60(23). p.1699-1699
Add to list
- Journal Article
- A1
Dopamine transporter SPECT using fast kinetic ligands : 123I-FP-β-CIT versus 99mTc-TRODAT-1

K Van Laere, L De Ceuninck, R Dom, Jimmy Van den Eynden (UGent) , H Vanbilloen, J Cleynhens, P Dupont, G Bormans, A Verbruggen and L Mortelmans

(2004) EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING. 31(8). p.1119-1127
Add to list
- Journal Article
- A1
Evaluation of anatomy based reconstruction for partial volume correction in brain FDG-PET

Kristof Baete, Johan Nuyts, Koen Van Laere, Wim Van Paesschen, Sarah Ceyssens, Liesbet De Ceuninck, Olivier Gheysens, Annemarie Kelles, Jimmy Van den Eynden (UGent) , Paul Suetens, et al.

(2004) NEUROIMAGE. 23(1). p.305-317
Add to list
- Journal Article
- A2
De schildwachtklierprocedure bij de behandeling van het vulvacarcinoom : eerste resultaten bij een reeks van 32 patiënten

Jimmy Van den Eynden (UGent) , L Lannoo, F Amant, S Stroobants and I Vergote

(2003) TIJDSCHRIFT VOOR GENEESKUNDE. 59(19). p.1169-1169

Preclinical exploration of the DNA damage response pathway using the interactive neuroblastoma cell line explorer CLEAN

ALK signaling primes the DNA damage response sensitizing ALK-driven neuroblastoma to therapeutic ATR inhibition

Effects of hyperthermia on cisplatin tissue penetration and gene expression in peritoneal metastases : results from a randomized trial in ovarian cancer

A systematic analysis of immune escape signals in the primary and metastatic tumor genome

Quantification of neoantigen-mediated immunoediting in cancer evolution : letter

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

ALK fusion NSCLC oncogenes promote survival and inhibit NK cell responses via SERPINB4 expression

Novel human-derived EML4-ALK fusion cell lines identify ribonucleotide reductase RRM2 as a target of activated ALK in NSCLC

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

A clinically annotated post-mortem approach to study multi-organ somatic mutational clonality in normal tissues

Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals

Pharmacologic RNA splicing modulation : a novel mechanism to enhance neoantigen-directed anti-tumor immunity and immunotherapy response

Network-based analysis to identify drivers of metastatic prostate cancer using GoNetic

ATR inhibition enables complete tumour regression in ALK-driven NB mouse models

Loss of RET promotes mesenchymal identity in neuroblastoma cells

ALK ligand ALKAL2 potentiates MYCN‐driven neuroblastoma in the absence of ALK mutation

11q deletion or ALK activity curbs DLG2 expression to maintain an undifferentiated state in neuroblastoma

Separating positional noise from neutral alignment in multicomponent statistical shape models

Lack of detectable neoantigen depletion signals in the untreated cancer genome

Targeting filamin A reduces macrophage activity and atherosclerosis

Phosphoproteome and gene expression profiling of ALK inhibition in neuroblastoma cell lines reveals conserved oncogenic pathways

The genetic structure of the Belgian population

Clinical response of the novel activating ALK-I1171T mutation in neuroblastoma to the ALK inhibitor ceritinib

An antisense RNA capable of modulating the expression of the tumor suppressor microRNA-34a

Elevated pyrimidine dimer formation at distinct genomic bases underlies promoter mutation hotspots in UV-exposed cancers

Mutational signatures are critical for proper estimation of purifying selection pressures in cancer somatic mutation data when using the dN/dS metric

Recurrent promoter mutations in melanoma are defined by an extended context-specific mutational signature

Simultaneous discovery of cancer subtypes and subtype features by molecular data integration

Somatic mutation patterns in hemizygous genomic regions unveil purifying selection during tumor evolution

Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events

SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering

Pathway relevance ranking for tumor samples through network-based data integration (award for Outstanding Oral Poster Presentation )

Pathway relevance ranking for tumor samples through network-based data integration

Identifying relevant pathways for different breast cancer subtypes using network based data integration

Glycine enhances microglial intracellular calcium signaling : a role for sodium-coupled neutral amino acid transporters

The inhibitory neurotransmitter glycine modulates macrophage activity by activation of neutral amino acid transporters

Glycine and glycine receptor signalling in non-neuronal cells

Dorsal unpaired median neurons of Locusta migratoria express ivermectin- and fipronil-sensitive glutamate-gated chloride channels

A highly reliable and budget-friendly Peltier-cooled camera for biological fluorescence imaging microscopy

Axillaire stagering met de schildwachtklier bij borstkanner : onze leercurve

Dopamine transporter SPECT using fast kinetic ligands : 123I-FP-β-CIT versus 99mTc-TRODAT-1

Evaluation of anatomy based reconstruction for partial volume correction in brain FDG-PET

De schildwachtklierprocedure bij de behandeling van het vulvacarcinoom : eerste resultaten bij een reeks van 32 patiënten