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Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
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- Journal Article
- A1
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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
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Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study
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Extracting functional insights from loss-of-function screens using deep link prediction
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Antibiotic cycling affects resistance evolution independently of collateral sensitivity
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Halvade somatic : somatic variant calling with Apache Spark
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- Miscellaneous
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Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
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BLSSpeller to discover novel regulatory motifs in maize
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Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress
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OMEN : network-based driver gene identification using mutual exclusivity
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Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence
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First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin
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- Journal Article
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Dynamic partitioning of search patterns for approximate pattern matching using search schemes
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- Journal Article
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Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation
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- Journal Article
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Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019
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A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
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Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
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Multifocality in prostate cancer : implications for PAM50 subtyping using an index lesion-only approach
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Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals
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A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches
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Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
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Network-based analysis to identify drivers of metastatic prostate cancer using GoNetic
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
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Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks
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- Journal Article
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Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes
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Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
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DNA-SIP and repeated isolation corroborate Variovorax as a key organism in maintaining the genetic memory for linuron biodegradation in an agricultural soil
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- Journal Article
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Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants
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A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay
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- Journal Article
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Pathway and network analysis of more than 2500 whole cancer genomes
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- Journal Article
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Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
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- Journal Article
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Integrative pathway enrichment analysis of multivariate omics data
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- Journal Article
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Combined burden and functional impact tests for cancer driver discovery using DriverPower
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- Journal Article
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Image-based dynamic phenotyping reveals genetic determinants of filamentation-mediated beta-lactam tolerance
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- Journal Article
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First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015
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- Journal Article
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Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
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Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples
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- Journal Article
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Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination
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- Journal Article
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Pan-cancer analysis of whole genomes
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- Journal Article
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Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study
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- Journal Article
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A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine
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- Journal Article
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The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country
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Culture-independent analysis of linuron-mineralizing microbiota and functions in on-farm biopurification systems via DNA-stable isotope probing : comparison with enrichment culture
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- Journal Article
- A1
- open access
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium
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- Journal Article
- A1
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Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
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- Journal Article
- A1
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Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
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- Journal Article
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Sex differences in oncogenic mutational processes
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- Miscellaneous
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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (vol 11, 4748, 2020)
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- Journal Article
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Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
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- Journal Article
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IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations