Ghent University Academic Bibliography

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Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

Sam De Meyer (UGent) , Daniel Felipe Cruz Galvis (UGent) , Tom De Swaef (UGent) , Peter Lootens, Jolien De Block (UGent) , Kevin Bird, Heike Sprenger (UGent) , Michael Van de Voorde (UGent) , Stijn Hawinkel (UGent) , Tom Van Hautegem (UGent) , et al.

(2023) PLOS COMPUTATIONAL BIOLOGY. 19(5).
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Variation in potential feeding value of triticale forage among plant fraction, maturity stage, growing season and genotype

Anneleen De Zutter (UGent) , Sofie Landschoot (UGent) , Pieter Vermeir (UGent) , Chris Van Waes, Hilde Muylle, Isabel Roldán-Ruiz (UGent) , Laid Douidah, Johan De Boever and Geert Haesaert (UGent)

(2023) HELIYON. 9(1).
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In vitro digestibility as screening tool for improved forage quality in triticale

Anneleen De Zutter (UGent) , Johan De Boever, Hilde Muylle, Isabel Roldán-Ruiz (UGent) and Geert Haesaert (UGent)

(2023) FIELD CROPS RESEARCH. 301.
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Flemish soils contain rhizobia partners for Northwestern Europe‐adapted soybean cultivars

Judith Van Dingenen (UGent) , Sonia García Méndez (UGent) , Stien Beirinckx, Lena Vlaminck (UGent) , Annick De Keyser (UGent) , Naomi Stuer (UGent) , Severine Verschaete, Alexander Clarysse (UGent) , Joke Pannecoucque (UGent) , Stephane Rombauts (UGent) , et al.

(2022) ENVIRONMENTAL MICROBIOLOGY. 24(8). p.3334-3354
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Soybean response and profitability upon inoculation and nitrogen fertilisation in Belgium

Joke Pannecoucque (UGent) , Sofie Goormachtigh, N. Ceusters, Samuel Bodé (UGent) , Pascal Boeckx (UGent) and Isabel Roldán-Ruiz (UGent)

(2022) EUROPEAN JOURNAL OF AGRONOMY. 132.
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Response of a diverse European soybean collection to 'short duration' and 'long duration' drought stress

Aamir Saleem, Jonas Aper, Hilde Muylle, Irene Borra-Serrano, Paul Quataert, Peter Lootens, Tom De Swaef and Isabel Roldán-Ruiz (UGent)

(2022) FRONTIERS IN PLANT SCIENCE. 13.
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- Conference Paper
- C3
Feeding value evaluation of triticale forage (X Triticosecale Wittmack) grown in Belgium

Anneleen De Zutter (UGent) , Johan De Boever, Hilde Muylle, Isabel Roldán-Ruiz (UGent) and Geert Haesaert (UGent)

(2022) International Triticale Symposium, 11th, Abstracts.
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Seasonal differences in structural and genetic control of digestibility in perennial ryegrass

Vincent Colas, Philippe Barre, Frederik van Parijs, Lukas Wolters, Yannick Quitté, Tom Ruttink (UGent) , Isabel Roldán-Ruiz (UGent) , Abraham J. Escobar Gutiérrez and Hilde Muylle

(2022) FRONTIERS IN PLANT SCIENCE. 12.
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Genetic composition and diversity of Arabica coffee in the crop’s centre of origin and its impact on four major fungal diseases

Beyene Zewdie, Yves Bawin, Ayco J. M. Tack, Sileshi Nemomissa, Kassahun Tesfaye, Steven B. Janssens, Sabine Van Glabeke, Isabel Roldán-Ruiz (UGent) , Tom Ruttink (UGent) , Olivier Honnay, et al.

(2022) MOLECULAR ECOLOGY. 32(10). p.2484-2503
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Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover

Lea A. Frey, Tim Vleugels, Tom Ruttink (UGent) , Franz X. Schubiger, Marie Pégard, Leif Skøt, Christoph Grieder, Bruno Studer, Isabel Roldán-Ruiz (UGent) and Roland Kölliker

(2022) THEORETICAL AND APPLIED GENETICS. 135(12). p.4337-4349
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Relevance of hop terroir for beer flavour

Ann Van Holle (UGent) , Hilde Muylle, Geert Haesaert (UGent) , Dirk Naudts, Denis De Keukeleire (UGent) , Isabel Roldán-Ruiz (UGent) and Anita Van Landschoot (UGent)

(2021) JOURNAL OF THE INSTITUTE OF BREWING. 127(3). p.238-247
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Applying RGB- and thermal-based vegetation indices from UAVs for high-throughput field phenotyping of drought tolerance in forage grasses

Tom De Swaef, Wouter Maes (UGent) , Jonas Aper, Joost Baert, Mathias Cougnon (UGent) , Dirk Reheul (UGent) , Kathy Steppe (UGent) , Isabel Roldán-Ruiz (UGent) and Peter Lootens

(2021) REMOTE SENSING. 13(1).
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Inter-annual and spatial climatic variability have led to a balance between local fluctuating selection and wide-range directional selection in a perennial grass species

T Keep, S Rouet, J L Blanco-Pastor, P Barre, Tom Ruttink (UGent) , K J Dehmer, M Hegarty, T Ledauphin, I Litrico, H Muylle, et al.

(2021) ANNALS OF BOTANY. 128(3). p.357-369
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To grow or survive : which are the strategies of a perennial grass to face severe seasonal stress?

Thomas Keep, Jean‐Paul Sampoux, Philippe Barre, José‐Luis Blanco‐Pastor, Klaus J. Dehmer, Jean‐Louis Durand, Matt Hegarty, Thomas Ledauphin, Hilde Muylle (UGent) , Isabel Roldán-Ruiz (UGent) , et al.

(2021) FUNCTIONAL ECOLOGY. 35(5). p.1145-1158
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- Conference Paper
Genomic and phenotypic diversity for adaption to future climate in natural populations of perennial ryegrass

José Luis Blanco-Pastor, Thomas Keep, Philippe Barre, Abraham Escobar-Gutiérrez, Evelin Willner, Klaus J. Dehmer, Matthew Hegarty, Hilde Muylle, Tom Ruttink (UGent) , Isabel Roldán-Ruiz (UGent) , et al.

(2021) Exploiting genetic diversity of forages to fulfil their economic and environmental roles. p.25-28
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Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica

Yves Bawin, Tom Ruttink (UGent) , Ariane Staelens, Annelies Haegeman, Piet Stoffelen, Jean‐Claude ItheMwanga Mwanga, Isabel Roldán-Ruiz (UGent) , Olivier Honnay and Steven B. Janssens

(2021) JOURNAL OF SYSTEMATICS AND EVOLUTION. 59(5). p.953-963
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A genome-wide genetic diversity scan reveals multiple signatures of selection in a European soybean collection compared to Chinese collections of wild and cultivated soybean accessions

Aamir Saleem, Hilde Muylle, Jonas Aper, Tom Ruttink (UGent) , Jiao Wang, Deyue Yu and Isabel Roldán-Ruiz

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

José Luis Blanco‐Pastor, Philippe Barre, Thomas Keep, Thomas Ledauphin, Abraham Escobar‐Gutiérrez, Anna Maria Roschanski, Evelyn Willner, Klaus J. Dehmer, Matthew Hegarty, Hilde Muylle, et al.

(2021) MOLECULAR ECOLOGY RESOURCES. 21(3). p.849-870
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- Journal Article
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Automatic wheat ear counting using machine learning based on RGB UAV imagery

Jose A. Fernandez‐Gallego, Peter Lootens, Irene Borra‐Serrano, Veerle Derycke (UGent) , Geert Haesaert (UGent) , Isabel Roldán-Ruiz (UGent) , Jose L. Araus and Shawn C. Kefauver

(2020) PLANT JOURNAL. 103(4). p.1603-1613
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Gloxinia—an open-source sensing platform to monitor the dynamic responses of plants

Olivier Pieters (UGent) , Tom De Swaef, Peter Lootens, Michiel Stock (UGent) , Isabel Roldán-Ruiz (UGent) and Francis wyffels (UGent)

(2020) SENSORS. 20(11).
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Limitations of snapshot hyperspectral cameras to monitor plant response dynamics in stress-free conditions

Olivier Pieters (UGent) , Tom De Swaef, Peter Lootens, Michiel Stock (UGent) , Isabel Roldán-Ruiz (UGent) and Francis wyffels (UGent)

(2020) COMPUTERS AND ELECTRONICS IN AGRICULTURE. 179.
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Assessing the consequences of policy measures on long-term agricultural productivity – Quantification for Flanders

Lieselot Boone (UGent) , Jo Dewulf (UGent) , Greet Ruysschaert, Tommy D’Hose, Hilde Muylle, Isabel Roldán-Ruiz (UGent) and Veerle Van linden

(2020) Journal of Cleaner Production. 246.
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High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (<i>Lolium perenne</i>L.)

Thomas Keep, Jean-Paul Sampoux, José Luis Blanco-Pastor, Klaus J Dehmer, Matthew J Hegarty, Thomas Ledauphin, Isabelle Litrico, Hilde Muylle, Isabel Roldán-Ruiz (UGent) , Anna M Roschanski, et al.

(2020) G3 Genes|Genomes|Genetics. 10(9). p.3347-3364
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Population genomic structure of the gelatinous zooplankton species Mnemiopsis leidyi in its nonindigenous range in the North Sea

Christophe Verwimp, Lies Vansteenbrugge, Sofie Derycke (UGent) , Thomas Kerkhove, Hilde Muylle, Olivier Honnay, Tom Ruttink (UGent) , Isabel Roldán-Ruiz (UGent) and Kris Hostens

(2020) ECOLOGY AND EVOLUTION. 10(1). p.11-25
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- Research Data
Close range hyperspectral camera dataset with high temporal resolution of strawberry with eco-physiological data of one leaf

Olivier Pieters (UGent) , Tom De Swaef, Peter Lootens, Michiel Stock (UGent) , Isabel Roldán-Ruiz (UGent) and Francis wyffels (UGent)

(2020)
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High-resolution time series of leaf length and leaf thickness of strawberry and tomato measured in a growth chamber

Olivier Pieters (UGent) , Tom De Swaef (UGent) , Peter Lootens, Michiel Stock (UGent) , Isabel Roldàn-Ruiz and Francis wyffels (UGent)

(2020)
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- Journal Article
- A1
Environmental sustainability of conventional and organic farming : accounting for ecosystem services in life cycle assessment

Lieselot Boone (UGent) , Isabel Roldán-Ruiz (UGent) , Veerle Van linden, Hilde Muylle and Jo Dewulf (UGent)

(2019) SCIENCE OF THE TOTAL ENVIRONMENT. 695.
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Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

Elisabeth Veeckman, Sabine Van Glabeke, Annelies Haegeman, Hilde Muylle, Frederik RD van Parijs, Stephen L Byrne, Torben Asp, Bruno Studer, Antje Rohde, Isabel Roldán-Ruiz (UGent) , et al.

(2019) DNA RESEARCH. 26(1). p.1-12
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- Conference Paper
- C3
- open access
Dry matter yield and organic matter digestibility of triticale forage harvested at five developmental stages

Anneleen De Zutter (UGent) , Veerle Derycke (UGent) , Kevin Dewitte (UGent) , Isabel Roldán-Ruiz (UGent) , Hilde Muylle, Johan De Boever and Geert Haesaert (UGent)

(2019) International Triticale Symposium, 10th, Abstracts.
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- Journal Article
- A1
Single nucleotide polymorphisms and biochemical markers as complementary tools to characterize hops (Humulus lupulus L.) in brewing practice

Ann Van Holle (UGent) , Hilde Muylle, Tom Ruttink (UGent) , Anita Van Landschoot (UGent) , Geert Haesaert (UGent) , Dirk Naudts, Denis De Keukeleire (UGent) and Isabel Roldán-Ruiz (UGent)

(2019) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. 67(13). p.3761-3771
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Pleistocene climate changes, and not agricultural spread, accounts for range expansion and admixture in the dominant grassland species Lolium perenne L.

José Luis Blanco‐Pastor, Stéphanie Manel, Philippe Barre, Anna M. Roschanski, Evelin Willner, Klaus J. Dehmer, Mathew Hegarty, Hilde Muylle, Tom Ruttink (UGent) , Isabel Roldán-Ruiz (UGent) , et al.

(2019) Journal of Biogeography. 46(7). p.1451-1465
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Physiological basis of chilling tolerance and early-season growth in miscanthus

Simon Fonteyne (UGent) , Hilde Muylle, Peter Lootens, Pavel Kerchev (UGent) , Wim Van den Ende, Ariane Staelens, Dirk Reheul (UGent) and Isabel Roldán-Ruiz (UGent)

(2018) ANNALS OF BOTANY. 121(2). p.281-295
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Introduction of a natural resource balance indicator to assess soil organic carbon management : Agricultural Biomass Productivity Benefit

Lieselot Boone (UGent) , Veerle Van linden, Isabel Roldán-Ruiz (UGent) , Carlos A Sierra, Bart Vandecasteele, Steven Sleutel (UGent) , Steven De Meester (UGent) , Hilde Muylle and Jo Dewulf (UGent)

(2018) JOURNAL OF ENVIRONMENTAL MANAGEMENT. 224. p.202-214
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Influence of pollinator abundance and flower visitation on seed yield in red clover

Adinda Vanommeslaeghe (UGent) , Ivan Meeus (UGent) , Gerda Cnops, Tim Vleugels, Martine Merchiers, Barbara Duquenne, Isabel Roldán-Ruiz (UGent) and Guy Smagghe (UGent)

(2018) ARTHROPOD-PLANT INTERACTIONS. 12(3). p.339-349
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Introducing turgor-driven growth dynamics into functional-structural plant models

Jonas Coussement (UGent) , Tom De Swaef, Peter Lootens, Isabel Roldán-Ruiz (UGent) and Kathy Steppe (UGent)

(2018) ANNALS OF BOTANY. 121(5). p.849-861
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A flexible geometric model for leaf shape descriptions with high accuracy

Jonas Coussement (UGent) , Kathy Steppe (UGent) , Peter Lootens, Isabel Roldán-Ruiz (UGent) and Tom De Swaef

(2018) SILVA FENNICA. 52(2).
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Modelling leaf spectral properties in a soybean functional-structural plant model by integrating the prospect radiative transfer model

Jonas Coussement (UGent) , Michael Henke, Peter Lootens, Isabel Roldán-Ruiz (UGent) , Kathy Steppe (UGent) and Tom De Swaef

(2018) ANNALS OF BOTANY. 122(4). p.669-676
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- Conference Paper
- C3
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The role of agricultural practices on long-term natural resource productivity in an LCA context : modeling and assessing effects of policy measures in Flanders

Lieselot Boone (UGent) , Veerle Van linden, Isabel Roldán-Ruiz (UGent) and Jo Dewulf (UGent)

(2018) SETAC Europe, 24th LCA symposium, Abstracts.
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- C3
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Accounting for soil quality effects of agricultural land management in LCA

Lieselot Boone (UGent) , Rodrigo Freitas de Alvarenga (UGent) , Veerle Van linden, Isabel Roldán-Ruiz (UGent) and Jo Dewulf (UGent)

(2018) SETAC Europe, 28th Annual meeting, Abstracts.
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Accounting for the impact of agricultural land use practices on soil organic carbon stock and yield under the area of protection natural resources : illustrated for Flanders

Lieselot Boone (UGent) , Rodrigo Freitas de Alvarenga (UGent) , Veerle Van linden, Isabel Roldán-Ruiz (UGent) , Bart Vandecasteele, Steven De Meester (UGent) , Hilde Muylle and Jo Dewulf (UGent)

(2018) JOURNAL OF CLEANER PRODUCTION. 203. p.521-529
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Temporal changes in genetic diversity and forage yield of perennial ryegrass in monoculture and in combination with red clover in swards

Christophe Verwimp, Tom Ruttink (UGent) , Hilde Muylle, Sabine Van Glabeke, Gerda Cnops, Paul Quataert, Olivier Honnay and Isabel Roldán-Ruiz (UGent)

(2018) PLOS ONE. 13(11).
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- Conference Paper
- C3
Modeling soil organic carbon management in cropfields : introduction of a resource based indicator to account for remediation actions

Lieselot Boone (UGent) , Veerle Van linden, Bart Vandecasteele, Isabel Roldán-Ruiz (UGent) and Jo Dewulf (UGent)

(2017) Wageningen Soil conference, Abstracts.
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- Journal Article
- A1
The brewing value of Amarillo hops (Humulus lupulus L.) grown in northwestern USA : a preliminary study of terroir significance

Ann Van Holle (UGent) , Anita Van Landschoot (UGent) , Isabel Roldán-Ruiz (UGent) , Dirk Naudts and Denis De Keukeleire (UGent)

(2017) JOURNAL OF THE INSTITUTE OF BREWING. 123(3). p.312-318
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In situ quantification of forage grass root biomass, distribution and diameter classes under two N fertilisation rates

Mathias Cougnon (UGent) , Tom De Swaef, Peter Lootens, Joost Baert, Pieter De Frenne (UGent) , Reihaneh Shahidi, Isabel Roldán-Ruiz (UGent) and Dirk Reheul (UGent)

(2017) PLANT AND SOIL. 411(1). p.409-422
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- Journal Article
Natural diversity in vegetative and reproductive investments of perennial ryegrass is shaped by the climate at the place of origin

P. Barre, Tom Ruttink (UGent) , H. Muylle, P. Lootens, J.‐P. Sampoux, A. Rohde, D. Combes and Isabel Roldán-Ruiz (UGent)

(2017) Grass and Forage Science. 73(1). p.193-205
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- Book Editor
Breeding in a world of scarcity : proceedings of the 2015 meeting of the section 'Forage Crops and Amenity Grasses' of Eucarpia

Isabel Roldán-Ruiz (UGent) , Joost Baert and Dirk Reheul (UGent)

(2016)
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- Journal Article
- A1
Models with only two predictor variables can accurately predict seed yield in diploid and tetraploid red clover

Tim Vleugels, Bob Ceuppens (UGent) , Gerda Cnops, Peter Lootens, Frederik van Parijs, Guy Smagghe (UGent) and Isabel Roldán-Ruiz (UGent)

(2016) EUPHYTICA. 209(2). p.507-523
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- A1
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Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize

Wannes Voorend (UGent) , Hilde Nelissen (UGent) , Ruben Vanholme (UGent) , Alex De Vliegher, Frank Van Breusegem (UGent) , Wout Boerjan (UGent) , Isabel Roldán-Ruiz (UGent) , Hilde Muylle and Dirk Inzé (UGent)

(2016) PLANT BIOTECHNOLOGY JOURNAL. 14(3). p.997-1007
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- Conference Paper
- C1
Are corolla tube dimensions the reason for low seed yield in tetraploid red clover?

T Vleugels, Isabel Roldán-Ruiz (UGent) , Bob Ceuppens (UGent) , Guy Smagghe (UGent) and G Cnops

(2016) Breeding in a world of scarcity : proceedings of the 2015 meeting of the section 'Forage Crops and Amenity Grasses' of Eucarpia. p.293-297
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- Journal Article
- A1
Environmental life cycle assessment of grain maize production: an analysis of factors causing variability

Lieselot Boone (UGent) , Veerle Van linden, Steven De Meester (UGent) , Bart Vandecasteele, Hilde Muylle, Isabel Roldán-Ruiz (UGent) , Thomas Nemecek and Jo Dewulf (UGent)

(2016) SCIENCE OF THE TOTAL ENVIRONMENT. 553. p.551-564

Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

Variation in potential feeding value of triticale forage among plant fraction, maturity stage, growing season and genotype

In vitro digestibility as screening tool for improved forage quality in triticale

Flemish soils contain rhizobia partners for Northwestern Europe‐adapted soybean cultivars

Soybean response and profitability upon inoculation and nitrogen fertilisation in Belgium

Response of a diverse European soybean collection to 'short duration' and 'long duration' drought stress

Feeding value evaluation of triticale forage (X Triticosecale Wittmack) grown in Belgium

Seasonal differences in structural and genetic control of digestibility in perennial ryegrass

Genetic composition and diversity of Arabica coffee in the crop’s centre of origin and its impact on four major fungal diseases

Phenotypic variation and quantitative trait loci for resistance to southern anthracnose and clover rot in red clover

Relevance of hop terroir for beer flavour

Applying RGB- and thermal-based vegetation indices from UAVs for high-throughput field phenotyping of drought tolerance in forage grasses

Inter-annual and spatial climatic variability have led to a balance between local fluctuating selection and wide-range directional selection in a perennial grass species

To grow or survive : which are the strategies of a perennial grass to face severe seasonal stress?

Genomic and phenotypic diversity for adaption to future climate in natural populations of perennial ryegrass

Phylogenomic analysis clarifies the evolutionary origin of Coffea arabica

A genome-wide genetic diversity scan reveals multiple signatures of selection in a European soybean collection compared to Chinese collections of wild and cultivated soybean accessions

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

Automatic wheat ear counting using machine learning based on RGB UAV imagery

Gloxinia—an open-source sensing platform to monitor the dynamic responses of plants

Limitations of snapshot hyperspectral cameras to monitor plant response dynamics in stress-free conditions

Assessing the consequences of policy measures on long-term agricultural productivity – Quantification for Flanders

High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (<i>Lolium perenne</i>L.)

Population genomic structure of the gelatinous zooplankton species Mnemiopsis leidyi in its nonindigenous range in the North Sea

Close range hyperspectral camera dataset with high temporal resolution of strawberry with eco-physiological data of one leaf

High-resolution time series of leaf length and leaf thickness of strawberry and tomato measured in a growth chamber

Environmental sustainability of conventional and organic farming : accounting for ecosystem services in life cycle assessment

Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

Dry matter yield and organic matter digestibility of triticale forage harvested at five developmental stages

Single nucleotide polymorphisms and biochemical markers as complementary tools to characterize hops (Humulus lupulus L.) in brewing practice

Pleistocene climate changes, and not agricultural spread, accounts for range expansion and admixture in the dominant grassland species Lolium perenne L.

Physiological basis of chilling tolerance and early-season growth in miscanthus

Introduction of a natural resource balance indicator to assess soil organic carbon management : Agricultural Biomass Productivity Benefit

Influence of pollinator abundance and flower visitation on seed yield in red clover

Introducing turgor-driven growth dynamics into functional-structural plant models

A flexible geometric model for leaf shape descriptions with high accuracy

Modelling leaf spectral properties in a soybean functional-structural plant model by integrating the prospect radiative transfer model

The role of agricultural practices on long-term natural resource productivity in an LCA context : modeling and assessing effects of policy measures in Flanders

Accounting for soil quality effects of agricultural land management in LCA

Accounting for the impact of agricultural land use practices on soil organic carbon stock and yield under the area of protection natural resources : illustrated for Flanders

Temporal changes in genetic diversity and forage yield of perennial ryegrass in monoculture and in combination with red clover in swards

Modeling soil organic carbon management in cropfields : introduction of a resource based indicator to account for remediation actions

The brewing value of Amarillo hops (Humulus lupulus L.) grown in northwestern USA : a preliminary study of terroir significance

In situ quantification of forage grass root biomass, distribution and diameter classes under two N fertilisation rates

Natural diversity in vegetative and reproductive investments of perennial ryegrass is shaped by the climate at the place of origin

Breeding in a world of scarcity : proceedings of the 2015 meeting of the section 'Forage Crops and Amenity Grasses' of Eucarpia

Models with only two predictor variables can accurately predict seed yield in diploid and tetraploid red clover

Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize

Are corolla tube dimensions the reason for low seed yield in tetraploid red clover?

Environmental life cycle assessment of grain maize production: an analysis of factors causing variability