Ghent University Academic Bibliography

Journal Article
A1
open access

Multiple mycotoxin exposure assessment through human biomonitoring in an esophageal cancer case-control study in the Arsi-Bale districts of Oromia region of Ethiopia

Girma Mulisa, Roger Peró Gascón (UGent) , Valerie McCormack, Jordan E. Bisanz, Fazlur Rahman Talukdar, Tamrat Abebe, Marthe De Boevre (UGent) and Sarah De Saeger (UGent)

(2025) INTERNATIONAL JOURNAL OF HYGIENE AND ENVIRONMENTAL HEALTH. 263.

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Near-infrared microscopy reveals diabetic nephropathy in ob/ob mice

Charlotte Delrue (UGent) , Mieke Steenbeke, Henk Vrielinck (UGent) , Wim Derave (UGent) , Inge Everaert (UGent) , Joris Delanghe (UGent) , Hans Baelde, Sander De Bruyne (UGent) and Marijn Speeckaert (UGent)

(2025) TALANTA. 282.

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Systematic analysis of an integrated ultraviolet pretreatment and mixotrophic denitrification system : insights into carbon, sulfur, and nitrogen metabolism, microbial community dynamics, and the fate of antibiotic resistance genes

Yue Chen (UGent) , Yang-Guo Zhao, Yishun Zhu, Progress Mupindu and Di Wu (UGent)

(2025) CHEMICAL ENGINEERING JOURNAL. 503.

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Journal Article
A1
open access

SpatialData : an open and universal data framework for spatial omics

Luca Marconato, Giovanni Palla, Kevin A. Yamauchi, Isaac Virshup, Elyas Heidari, Tim Treis, Wouter-Michiel Vierdag, Marcella Toth, Sonja Stockhaus, Rahul B. Shrestha, et al.

(2025) NATURE METHODS. 22(1). p.58-62

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Journal Article
A1
open access

Action potential threshold variability for different electrostimulation models and its potential impact on occupational exposure limit values

Florian Soyka, Thomas Tarnaud (UGent) , Carsten Altekoester, Ruben Schoeters (UGent) , Tom Plovie (UGent) , Wout Joseph (UGent) and Emmeric Tanghe (UGent)

(2025) BIOELECTROMAGNETICS. 46(1).

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Biological switches : past and future milestones of transcription factor-based biosensors

Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2025) ACS SYNTHETIC BIOLOGY. 14(1). p.72-86

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Book Chapter

Physical activity and citizen science : two case studies from Flanders (Belgium)

Greet Cardon (UGent) , Tom Storme (UGent) , Sebastien Chastin (UGent) , Sien Benoit, Bart De Wit (UGent) , Delfien Van Dyck (UGent) , Nico Van de Weghe (UGent) , Frank Witlox (UGent) and Katrien De Cocker (UGent)

(2025) Health, media, and communication. In Handbooks of communication science p.505-526

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MicroRNAs bta-novel-miR-117, bta-novel-miR-234 and bta-novel-miR-417 have adverse effects on blastocyst formation

Guan XueFeng (UGent) , Yuan Fan (UGent) , Rani Six (UGent) , Ann Van Soom (UGent) , Krishna Chaitanya Pavani (UGent) and Luc Peelman (UGent)

(2025) THERIOGENOLOGY. 233. p.88-99

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Miscellaneous
open access

Correction : Bubbling insights : unveiling the true sophorolipid biosynthetic pathway by Starmerella bombicola

Sophie Roelants (UGent) , Stijn Bovijn (UGent) , Elvira Bytyqi (UGent) , Nicolas de Fooz (UGent) , Goedele Luyten (UGent) , Martijn Castelein (UGent) , Thibo Van de Craen (UGent) , Zhoujian Diao (UGent) , Karolien Maes, Tom Delmulle (UGent) , et al.

(2025) BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS. 18(1).

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Journal Article
A1
open access

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas Prost (UGent) , Quinten Bafort (UGent) , Antoine Van de Vloet (UGent) , Fabricio De Almeida Silva (UGent) , Yunn Thet Paing (UGent) , Griet Casteleyn (UGent) , Sofie D'hondt (UGent) , Olivier De Clerck (UGent) and Yves Van de Peer (UGent)

(2025) NEW PHYTOLOGIST. 245(22). p.869-884

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Mandibular ecomorphology in the genus ursus (Ursidae, Carnivora) : relevance for the palaeoecological adaptations of cave bears (U. spelaeus) from Scladina cave

Daniel Charters, Richard P. Brown, Grégory Abrams (UGent) , Kévin Di Modica, Stéphane Pirson, Isabelle De Groote (UGent) , Luca Ghiraldi and Carlo Meloro

(2025) HISTORICAL BIOLOGY. p.1-15

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Journal Article
A1
open access

A VersaTile approach to reprogram the specificity of the R2-type tailocin towards different serotypes of Escherichia coli and Klebsiella pneumoniae

Dorien Dams (UGent) , Célia Pas (UGent) , Agnieszka Łątka (UGent) , Zuzanna Drulis-Kawa, Lars Fieseler and Yves Briers (UGent)

(2025) ANTIBIOTICS-BASEL. 14(1).

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Does a real-life cognitively enriched walking program 'Take a walk with your brain' benefit cognitive functioning and physical activity in community-dwelling older adults? A randomized controlled trial

Pauline Hotterbeex (UGent) , Greet Cardon (UGent) , Melanie Beeckman, Julie Latomme (UGent) , Wim Fias (UGent) , Stefaan Van Puyenbroeck (UGent) , Sebastien Chastin (UGent) and Jannique Van Uffelen (UGent)

(2025) GERONTOLOGIST.

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Journal Article
A1
open access

Exploring the structural diversity and biotechnological potential of the rhodophyte phycolectome

Éllen F. Rodrigues, Flavia Alves Verza, Felipe Garcia Nishimura, Renê Oliveira Beleboni, Cedric Hermans, Kaat Janssens, Maarten De Mol (UGent) , Paco Hulpiau and Mozart Marins

(2025) MARINE DRUGS. 23(1).

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Journal Article
A1
open access

High-throughput screening of acetogenic strains for growth and metabolite profiles on readily available biomass

Natálie Palucha (UGent) , Koen Quataert, Elodie Vlaeminck (UGent) , Eliot Schröder, Karel De Winter and Wim Soetaert (UGent)

(2025) BIORESOURCE TECHNOLOGY. 419.

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Journal Article
A1
open access

The pan-PPAR agonist lanifibranor reduces portal pressure independent of fibrosis reduction through the splanchnic vasculature

Anneleen Heldens (UGent) , Christophe Casteleyn (UGent) , Louis Onghena (UGent) , Milton Boaheng Antwi (UGent) , Sara Neyt (UGent) , Benedicte Descamps (UGent) , Christian Vanhove (UGent) , Xavier Verhelst (UGent) , Sarah Raevens (UGent) , Hans Van Vlierberghe (UGent) , et al.

(2025) BIOMEDICINE & PHARMACOTHERAPY. 183.

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Macrofauna community structure and population dynamics in the Flemish bank region : assessing long-term change in the Anthropocene

Sarah Broos (UGent) , Gert Van Hoey and Carl Van Colen (UGent)

(2025) CONTINENTAL SHELF RESEARCH. 285.

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Journal Article
A1
open access

Stomatal opening under high temperatures is controlled by the OST1-regulated TOT3–AHA1 module

Xiangyu Xu (UGent) , Hongyan Liu (UGent) , Myrthe Praat, Gaston A. Pizzio, Zhang Jiang, Steven Michiel Driever, Ren Wang (UGent) , Brigitte Van De Cotte (UGent) , Selwyn Villers (UGent) , Kris Gevaert (UGent) , et al.

(2025) NATURE PLANTS. 11(1).

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The multidimensionality of moral identity : toward a broad characterization of the moral self

Tassilo Tissot (UGent) , Alain Van Hiel (UGent) , Dries Bostyn (UGent) , Leen Haerens (UGent) , Annick Willem (UGent) and Bram Constandt (UGent)

(2025) ETHICS & BEHAVIOR.

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PhD Thesis

Microbial flow cytometry reveals responses of the oral microbiota to antimicrobial treatment

Fabian Mermans (UGent)

(2025)

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Journal Article
A1
open access

Machine learning with label-free Raman microscopy to investigate ferroptosis in comparison with apoptosis and necroptosis

Joost Verduijn (UGent) , Eva Degroote (UGent) and Andre Skirtach (UGent)

(2025) COMMUNICATIONS BIOLOGY. 8(1).

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Journal Article
A1
open access

In vitro rooting of poplar : effects and metabolism of dichlorprop auxin ester prodrugs

Hajer Darouez (UGent) and Stefaan Werbrouck (UGent)

(2025) PLANTS-BASEL. 14(1).

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Journal Article
A2
open access

Endogenous HiBiT-tagging combined with affinity complementation : a new strategy for small open reading frame-encoded polypeptide detection in bacteria

Laure Simoens (UGent) , Veronique Jonckheere (UGent) , Dominiek Catteeuw (UGent) and Petra Van Damme (UGent)

(2025) ADVANCES IN SAMPLE PREPARATION. 13.

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PhD Thesis

Exploration and engineering of dehydratases and epimerases for the biocatalytic synthesis of nucleotide diphosphate deoxy sugars

Ulrike Vogel (UGent)

(2025)

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Journal Article
A1
open access

Unravelling the hidden side of laundry : malodour, microbiome and pathogenome

Celia Diez Lopez (UGent) , Florence Van Herreweghen (UGent) , Britta De Pessemier (UGent) , Yorick Minnebo (UGent) , Steff Taelman (UGent) , Kara Judge, Karen Ransley, Christopher Hammond, Matthew Batson, Michiel Stock (UGent) , et al.

(2025) BMC BIOLOGY. 23(1).

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Oocyte holding and in vitro maturation duration between 28 and 34 hours do not affect equine OPU-ICSI outcomes

Klaartje Broothaers (UGent) , Osvaldo Américo Bogado Pascottini (UGent) , Mohamed Hedia (UGent) , Daniel Angel Velez (UGent) , Tine De Coster (UGent) , Sofie Peere (UGent) , Ellen Polfliet (UGent) , Emma Van den Branden (UGent) , Jan Govaere (UGent) , Ann Van Soom (UGent) , et al.

(2025) THERIOGENOLOGY. 233. p.64-69

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PhD Thesis

The small intestinal redox status and its bioenergetics in piglets during the weaning transition

Yuhuang Hou (UGent)

(2025)

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PhD Thesis

Structural basis for pro-inflammatory signaling and antagonism of cytokine-receptor complexes within the IL-1 family

Julie Andries (UGent)

(2025)

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PhD Thesis

The influence of forest structural complexity on ticks, hosts, and pathogen prevalence

Tosca Vanroy (UGent)

(2025)

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Deciphering the mechanisms of action underlying probiotic properties of Shouchella clausii by a functional genomics approach

A. Lashermes, E. Mathieu, Ludovica Marinelli (UGent) , V. Léjard, E. Dervyn, C. Martin-Gallausiaux, M. Jules, N. Lapaque, J. Doré, M.-C. Multon, et al.

(2025) BENEFICIAL MICROBES. p.1-16

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Journal Article
A1
open access

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida Silva (UGent) and Yves Van de Peer (UGent)

(2025) BIOINFORMATICS. 41(2).

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Sperm cryopreservation and reproductive characteristics in the beauty snake (Elaphe taeniura) as a model for endangered Colubridae

Penelope Banchi (UGent) , Ferran Solanes Vilanova (UGent) , Mattia Cesauri, Lotte Spanoghe (UGent) , Koen Chiers (UGent) , Ann Van Soom (UGent) , Tom Hellebuyck (UGent) and Guilherme Rizzoto (UGent)

(2025) CRYOBIOLOGY. 118.

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Comparison of serum microRNA in healthy horses and horses with moderate to severe mitral valve regurgitation using a commercially available canine cardiac panel

Amber Calewaert, Javier Palarea-Albaladejo, Robert Coultous, Paul Capewell, Eve Hanks, Annelies Decloedt (UGent) and Gunther van Loon (UGent)

(2025) EQUINE VETERINARY JOURNAL.

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Book Chapter

Proteomics-based analysis of laser-capture micro-dissected, formalin-fixed paraffin-embedded tissue samples

Teresa Maia (UGent) , Delphi Van Haver (UGent) , Sara Dufour (UGent) , Malaïka Van der Linden (UGent) , Amélie Dendooven (UGent) , Francis Impens (UGent) and Simon Devos (UGent)

(2025) Tissue Proteomics : Methods and Protocols. In Methods in Molecular Biology 2884. p.333-354

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Synergistic effects in seaweed-based activated carbon and Bi5O7I composites in photocatalytic dye degradation

Sepideh Soroush (UGent) , Frederik Ronsse (UGent) and Philippe Heynderickx (UGent)

(2025) JOURNAL OF WATER PROCESS ENGINEERING. 69.

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Journal Article
A1
open access

Solu : a cloud platform for real-time genomic pathogen surveillance

Timo Saratto, Kerkko Visuri, Jonatan Lehtinen, Irene Ortega Sanz (UGent) , Jacob L. Steenwyk and Samuel Sihvonen

(2025) BMC BIOINFORMATICS. 26(1).

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Independent genetic mapping experiments identify diverse molecular determinants of host adaptation in a generalist herbivore

Ernesto Villacis Perez (UGent) , Femke De Graeve (UGent) , Berdien De Beer, Seham Ali Alshami, Rick De Jong, Tim De Meyer (UGent) and Thomas Van Leeuwen (UGent)

(2025) MOLECULAR ECOLOGY.

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Turning the non-pathogenic yeast Starmerella bombicola into a powerful long-chain dicarboxylic acid production host

Jungho Lee (UGent) , Iris Cornet, Kristien De Sitter and Inge Van Bogaert (UGent)

(2025) BIORESOURCE TECHNOLOGY. 419.

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Modeling algae growth on masonry in hygrothermal simulations : developing a new response indicator

Xiaolin Chen (UGent) , Piet Termonia (UGent) , Rafiq Hamdi (UGent) and Nathan Van Den Bossche (UGent)

(2025) BUILDING AND ENVIRONMENT. 269.

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Journal Article
A1
open access

Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

Friederike Mey, Gaetan De Waele (UGent) , Wouter Demeester (UGent) , Chiara Guidi (UGent) , Dries Duchi (UGent) , Tomek Diederen, Hanne Kochuyt, Kirsten Van Huffel, Nicola Zamboni, Willem Waegeman (UGent) , et al.

(2025) NEW BIOTECHNOLOGY. 86. p.39-46

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Molecular fingerprints of cell size sensing and mating type differentiation in pennate diatoms

Darja Belišová (UGent) , Gust Bilcke (UGent) , Sien Audoor, Sofie D'hondt (UGent) , Lieven De Veylder (UGent) , Klaas Vandepoele (UGent) and Wim Vyverman (UGent)

(2025) NEW PHYTOLOGIST. 245(4). p.1625-1639

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Journal Article
A1
open access

Small-angle X-ray scattering of engineered antigen-binding fragments : the case of glycosylated Fab from the Mannitou IgM antibody

Shubham Semwal (UGent) , Maria Karamolegkou (UGent) , Stéphanie Flament, Nessim Raouraoua, Kenneth Verstraete (UGent) , Aurélien Thureau, Frank Wien, Fabrice Bray, Savvas Savvides (UGent) and Julie Bouckaert

(2025) ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS. 81(Pt 1). p.19-29

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Comparative environmental impact of chitosan extraction methods from shrimp waste

Pouya Mohammadi (UGent) , Zahra Khounani, Homa Hosseinzadeh-Bandbafha, Shin Ying Foong, Mohd Azman Yusoff, Hossein Shahbeik, Normy Norfiza Abdul Razak, Su Shiung Lam, Sheikh Ahmad Faiz Sheikh Ahmad Tajuddin, Mortaza Aghbashlo, et al.

(2025) JOURNAL OF ENVIRONMENTAL CHEMICAL ENGINEERING. 13(1).

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Journal Article
A1
open access

PPARα-ERRα crosstalk mitigates metabolic dysfunction-associated steatotic liver disease progression

Milton Boaheng Antwi (UGent) , Sander Lefere (UGent) , Dorien Clarisse (UGent) , Lisa Koorneef (UGent) , Anneleen Heldens (UGent) , Louis Onghena (UGent) , Kylian Decroix (UGent) , Daria Fijalkowska (UGent) , Jonathan Thommis (UGent) , Madeleine Hellemans (UGent) , et al.

(2025) METABOLISM-CLINICAL AND EXPERIMENTAL. 164.

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Journal Article
A1
open access

Spatially restricted and ontogenically distinct hepatic macrophages are required for tissue repair

Federico Francesco De Ponti (UGent) , Anna Bujko (UGent) , Zhuangzhuang Liu (UGent) , Paul Collins (UGent) , Sara Schuermans, Christian Maueröder (UGent) , Seraja Amstelveen (UGent) , Tinne Thoné (UGent) , Liesbet Martens (UGent) , John McKendrick (UGent) , et al.

(2025) IMMUNITY. 58(2). p.362-380

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Journal Article
A1
open access

CytoNorm 2.0 : a flexible normalization framework for cytometry data without requiring dedicated controls

Katrien Quintelier (UGent) , Marcella Willemsen, Victor Bosteels (UGent) , Joachim G. J. V. Aerts, Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2025) CYTOMETRY PART A.

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Journal Article
A1
open access

Glycomics as prognostic biomarkers of hepatocellular carcinoma : a systematic review

Nicky Somers (UGent) , Emma Butaye (UGent) , Lorenz Grossar (UGent) , Nele Pauwels (UGent) , Anja Geerts (UGent) , Sarah Raevens (UGent) , Sander Lefere (UGent) , Lindsey Devisscher (UGent) , Leander Meuris (UGent) , Nico Callewaert (UGent) , et al.

(2025) ONCOLOGY LETTERS. 29(1).

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Journal Article
A1
open access

The maize aquaporin ZmPIP1;6 enhances stomatal opening and CO2- and ABA-induced stomatal closure

Lei Ding, Maxime J. Laurent, Thomas Milhiet, Stijn Aesaert (UGent) , Maria Van Lijsebettens (UGent) , Laurens Pauwels (UGent) , Hilde Nelissen (UGent) , Dirk Inzé (UGent) and François Chaumont

(2025) JOURNAL OF EXPERIMENTAL BOTANY.

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Journal Article
A1
open access

A multiyear longitudinal harmonization study of quality controls in mass spectrometry proteomics core facilities

Cristina Chiva, Roger Olivella, An Staes (UGent) , Teresa Maia (UGent) , Christian Panse, Karel Stejskal, Thibaut Douché, Bérangère Lombard, Andrea Schuhmann, Damarys Loew, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.397-409

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Miscellaneous

Unveiling the risks : protecting privacy in single-cell genomics data

Rafael Kramann, Christoph Kuppe, Valerie Luyckx, Wim Van Biesen (UGent) and Stefanie Steiger

(2025) NEPHROLOGY DIALYSIS TRANSPLANTATION.

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Journal Article
A1
open access

Smallholder farmers’ knowledge on management of Cinchona in the Democratic Republic of the Congo

Bezawit Mekonnen (UGent) , Cizungu Ntaboba Landry (UGent) , Julio Alegre, Haben Blondeel (UGent) , Emiel De Lombaerde (UGent) , Hans Verbeeck (UGent) , Luc Duchateau (UGent) , Eddie Schrevens, Kris Verheyen (UGent) , Pascal Boeckx (UGent) , et al.

(2025) PLANT ECOLOGY AND EVOLUTION. 158(1). p.3-13

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Journal Article
A1
open access

Effectiveness of the XBB.1.5 COVID-19 vaccines against SARS-CoV-2 hospitalisation among adults aged ≥ 65 years during the BA.2.86/JN.1 predominant period, VEBIS Hospital Study, Europe, November 2023 to May 2024

Liliana Antunes, Madelyn Rojas-Castro, Marcos Lozano, Iván Martínez-Baz, Isabel Leroux-Roels (UGent) , Maria-Louise Borg, Beatrix Oroszi, Margaret Fitzgerald, Ralf Dürrwald, Ligita Jancoriene, et al.

(2025) INFLUENZA AND OTHER RESPIRATORY VIRUSES. 19(3).

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Journal Article
A1
open access

Biofilm inhibition and eradication activity of citral and borneol against foodborne bacteria

Wen Wang, Tom Coenye (UGent) , Jianyu Su and Sheng-Xiang Qiu

(2025) INDUSTRIAL CROPS AND PRODUCTS. 223.

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Journal Article
A1
open access

A guide to germ-free and gnotobiotic mouse technology to study health and disease

Maude Jans (UGent) and Lars Vereecke (UGent)

(2025) FEBS JOURNAL. 292(6). p.1228-1251

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High-load, sustained-release antibacterial composite particles based on modified vaterite coated with quaternary ammonium chitosan and aldehyde hyaluronic acid for controlled drug delivery systems

Yanqi Huang (UGent) , Joost Verduijn (UGent) , Tom Coenye (UGent) , Pengfei Liu, Andre Skirtach (UGent) and Bogdan Parakhonskiy (UGent)

(2025) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. 305(Part 1).

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Journal Article
A2
open access

Combination of phages and antibiotics with enhanced killing efficacy against dual-species bacterial communities in a three-dimensional lung epithelial model

Ergun Akturk, Graca Pinto, Lisa Ostyn (UGent) , Aurélie Crabbé (UGent) , Luis D. R. Melo, Joana Azeredo and Tom Coenye (UGent)

(2025) BIOFILM. 9.

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Journal Article
A1
open access

A novel synthetic synovial fluid model for investigating biofilm formation and antibiotic susceptibility in prosthetic joint infections

Amber De Bleeckere (UGent) , Frits van Charante, Thibault Debord, Stien Vandendriessche (UGent) , Michiel De Cock, Marte Verstraete, Fabien Lamret, Bram Lories, Jerina Boelens (UGent) , Fany Reffuveille, et al.

(2025) MICROBIOLOGY SPECTRUM. 13(1).

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Journal Article
A1
open access

Evaluation of antibiofilm agents for treatment of cystic fibrosis-related chronic rhinosinusitis

Saartje Uyttebroek, Lieven Dupont, Jeroen Wagemans, Rob Lavigne, Maya Merabishvili, Tom Coenye (UGent) and Laura Van Gerven

(2025) INTERNATIONAL FORUM OF ALLERGY & RHINOLOGY. 15(1). p.73-76

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Journal Article
A1
open access

Exploration of theta burst-induced modulation of transcranial magnetic stimulation-evoked potentials over the motor cortex

Sofie Carrette (UGent) , Kristl Vonck (UGent) , Debby Klooster, Robrecht Raedt (UGent) , Evelien Carrette (UGent) , Jean Delbeke (UGent) , Wytse Wadman (UGent) , Silvia Casarotto, Marcello Massimini and Paul Boon (UGent)

(2025) NEUROMODULATION. 28(1). p.123-135

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Book Editor

An archaeology of the Bantu expansion : early settlers south of the Congo rainforest

Peter Coutros (UGent) , Igor Roland Matonda Sakala (UGent) , Jessamy Doman (UGent) and Koen Bostoen (UGent)

(2025)

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Medicinal plant use and diversity in the urban area of Idiofa, Democratic Republic of Congo

Emiel De Meyer (UGent) , Melissa Ceuterick (UGent) , Wouter Vanhove (UGent) , Jurgen Heytens, Jean Eden Mimbu, Patrick Van Damme (UGent) and Eduardo de la Pena (UGent)

(2025) JOURNAL OF ETHNOBIOLOGY. 45(1). p.38-50

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Stress and telomere length in leukocytes : investigating the role of GABRA6 gene polymorphism and cortisol

Pablo Martino, Mario Perez-Alarcón, Luna Deconinck, Rudi De Raedt (UGent) , Marie-Anne Vanderhasselt (UGent) , Gosia Kozusznik (UGent) , Frank Kooy, Vanesa Hidalgo, César Venero, Alicia Salvador, et al.

(2025) PSYCHONEUROENDOCRINOLOGY. 173.

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Assessment of biphasic CAPA-IVM for improving equine oocyte quality and developmental potential

Muhammad Fakhar-I-Adil (UGent) , Daniel Angel Velez (UGent) , Qurratul Ain Amin (UGent) , Mohamed Hedia (UGent) , Björn Menten (UGent) , Ann Van Soom (UGent) , Katrien Smits (UGent) and Björn Heindryckx (UGent)

(2025) REPRODUCTION FERTILITY AND DEVELOPMENT. In Reproduction, Fertility and Development 37(1).

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Journal Article
A1
open access

Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1

Hong Wei, Heyuan Zhu (UGent) , Wei Ying, Hilde Janssens (UGent) , Miroslav Kvasnica, Johan M. Winne, Yongxiang Gao, Jiří Friml, Qian Ma (UGent) , Shutang Tan, et al.

(2025) PLANT COMMUNICATIONS. 6(1).

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Journal Article
A1
open access

Decoding bull fertility in vitro : a proteomics exploration from sperm to blastocyst

Andrea Fernández Montoro (UGent) , Emin Araftpoor (UGent) , Tine De Coster (UGent) , Daniel Angel Velez (UGent) , Marcel Bühler (UGent) , Mohamed Hedia (UGent) , Kris Gevaert (UGent) , Ann Van Soom (UGent) , Krishna Chaitanya Pavani (UGent) and Katrien Smits (UGent)

(2025) REPRODUCTION. 169(4).

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Journal Article
A1
open access

Toward a phylogenomic classification of magnoliids

Andrew J. Helmstetter, Zacky Ezedin, Elton John de Lírio, Sylvia M. de Oliveira, Lars Chatrou (UGent) , Roy H. J. Erkens, Isabel Larridon (UGent) , Kevin Leempoel, Olivier Maurin, Shyamali Roy, et al.

(2025) AMERICAN JOURNAL OF BOTANY. 112(1).

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Journal Article
A1
open access

Predictors of relapse risk and treatment response in AQP4-IgG positive and seronegative NMOSD : a multicentre study

Pakeeran Siriratnam, Paul Sanfilippo, Anneke van der Walt, Sifat Sharmin, Yi Chao Foong, Wei Zhen Yeh, Chao Zhu, Samia Joseph Khoury, Tunde Csepany, Barbara Willekens, et al.

(2025) JOURNAL OF NEUROLOGY NEUROSURGERY AND PSYCHIATRY. 96(4). p.361-369

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Journal Article
A2
open access

Biotin/avidin-free sandwich aptamer-based lateral flow assay (ALFA) for the diagnosis of Trichomonas vaginalis

Christine Aubrey C. Justo, Vasso Skouridou, Piet Cools (UGent) , Guy Mulinganya, Alexandra Ibáñez-Escribano and Ciara K. O'Sullivan

(2025) SENSORS & DIAGNOSTICS. 4(3). p.216-228

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Journal Article
A1
open access

Biologics and airway remodeling in asthma : early, late, and potential preventive effects

G. Varricchi, R. Poto, M. Lommatzsch, Guy Brusselle (UGent) , F. Braido, J. C. Virchow and G. W. Canonica

(2025) ALLERGY. 80(2). p.408-422

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Journal Article
A1
open access

Safety and immunogenicity of an adjuvanted clostridioides difficile vaccine candidate in healthy adults : a randomized placebo-controlled phase 1 study

Isabel Leroux-Roels (UGent) , Azhar Alhatemi (UGent) , Magalie Caubet, Fien De Boever (UGent) , Bertrand de Wergifosse, Mohamed El Idrissi, Guilherme S Ferreira, Bart Jacobs (UGent) , Axel Lambert, Sandra Morel, et al.

(2025) JOURNAL OF INFECTIOUS DISEASES. 231(3). p.e511-e520

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A2
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Exploring aneuploidies in two-center isolated bovine embryonic stem cell lines : implications for cultured meat production

Chloë Deelkens (UGent) , Elly De Vlieghere (UGent) , Mario Van Poucke (UGent) , Masaki Kinoshita, Jeffrey Aalders (UGent) , Lieven Thorrez, Bert Devriendt (UGent) , Ann Van Soom (UGent) , Luc Peelman (UGent) , Björn Menten (UGent) , et al.

(2025) FUTURE FOODS. 11.

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A1
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Human stem cell models for Marfan syndrome : a brief overview of the rising star in disease modelling

Jeffrey Aalders (UGent) , Laura Muiño Mosquera (UGent) and Jolanda van Hengel (UGent)

(2025) FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 12.

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A1
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Impairment of endocytosis-related factors FNBP1L, ARHGAP24, and ATP6V1B1 increases HIV-1 entry into dendritic cells

Marija Janevska (UGent) , Wojciech Witkowski (UGent) , Jolien Vermeire (UGent) , Marek Borowicz, Evelien Naessens (UGent) , Hanne Vanderstraeten, Hans Nauwynck (UGent) , Herman Favoreel (UGent) and Bruno Verhasselt (UGent)

(2025) JOURNAL OF VIROLOGY.

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A novel recurrent ARL3 variant c.209G>A p.(Gly70Glu) causes variable non-syndromic dominant retinal dystrophy with defective lipidated protein transport in human retinal stem cell models

Julio C Corral-Serrano, Veronika Vaclavik, Stijn Van de Sompele (UGent) , Karolina Kaminska, Katarina Jovanovic, Pascal Escher, Filip Van Den Broeck (UGent) , Francesca Cancellieri, Vasileios Toulis, Bart Leroy (UGent) , et al.

(2025) HUMAN MOLECULAR GENETICS.

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A1
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Immunogenicity of cell death and cancer immunotherapy with immune checkpoint inhibitors

Elena Catanzaro (UGent) , Manuel Beltran-Visiedo, Lorenzo Galluzzi and Dmitri Krysko (UGent)

(2025) CELLULAR & MOLECULAR IMMUNOLOGY. 22(1). p.24-39

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A1
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Flexible methods for uncertainty estimation of digital PCR data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Matthijs Vynck (UGent) , Wim Trypsteen (UGent) , David Gleerup (UGent) , Jo Vandesompele (UGent) and Olivier Thas (UGent)

(2025) ISCIENCE. 28(3).

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A1
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The role of N6-methyladenosine (m6A) mRNA modifications in herpesvirus infections

Ruth Verhamme (UGent) and Herman Favoreel (UGent)

(2025) JOURNAL OF VIROLOGY. 99(2).

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Miscellaneous

Hemoglobin mass determination : exploring carboxyhemoglobin stability and analyzer interchangeability

Janne Bouten (UGent) , Johan Garcia, Romain Carin, Elie Nader, Aurélien Pichon, Paul Robach, Philippe Connes and Franck Brocherie

(2025) DRUG TESTING AND ANALYSIS.

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Miscellaneous
open access

Phylogeny and ecology of the green seaweed Ulva : part II

Jonas Blomme (UGent) , Thomas Wichard and Sophie Steinhagen

(2025) BOTANICA MARINA. 68(1). p.1-3

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A1
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Reduced RG-II pectin dimerization disrupts differential growth by attenuating hormonal regulation

Pawan Kumar Jewaria, Bibek Aryal, Rifat Ara Begum, Yaowei Wang, Gloria Sancho-Andrés, Abu Imran Baba, Meng Yu, Xiaojuan Li, Jinxing Lin, Stephen C. Fry, et al.

(2025) SCIENCE ADVANCES. 11(7).

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Plasmodesmata act as unconventional membrane contact sites regulating intercellular molecular exchange in plants

Jessica Pérez-Sancho, Marija Smokvarska, Gwennogan Dubois, Marie Glavier, Sujith Sritharan, Tatiana S. Moraes, Hortense Moreau, Victor Dietrich, Matthieu P. Platre, Andrea Paterlini, et al.

(2025) CELL. 188(4). p.958-977.e23

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Plant steroids on the move : mechanisms of brassinosteroid export

Ziliang Hu (UGent) , Hong Wei, Linfeng Sun and Eugenia Russinova (UGent)

(2025) TRENDS IN BIOCHEMICAL SCIENCES.

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Steam sterilisation of disposable surgical gowns does not compromise resistance to wet microbial penetration

Janne Stael, Maarten Haspeslagh (UGent) , Ilse Beekhuis and Ann Martens (UGent)

(2025) VETERINARY RECORD.

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A1
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Modeling thoracic aortic genetic variants in the zebrafish : useful for predicting clinical pathogenicity?

Andrew Prendergast, Mary B. Sheppard, Jakub K. Famulski, Stefania Nicoli, Sandip Mukherjee, Patrick Sips (UGent) and John A. Elefteriades

(2025) FRONTIERS IN CARDIOVASCULAR MEDICINE. 12.

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A1
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Genomic analysis and replication kinetics of the closely related EHV-1 neuropathogenic 21P40 and abortigenic 97P70 strains

Eslam Mohamed (UGent) , Ines Zarak (UGent) , Nick Vereecke (UGent) , Sebastiaan Theuns (UGent) , Kathlyn Laval (UGent) and Hans Nauwynck (UGent)

(2025) VETERINARY RESEARCH. 56(1).

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A1
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Donor age and breed determine mesenchymal stromal cell characteristics

Emma Heyman (UGent) , Maria Olenic, Elly De Vlieghere (UGent) , Stefaan De Smet (UGent) , Bert Devriendt (UGent) , Lieven Thorrez and Catharina De Schauwer (UGent)

(2025) STEM CELL RESEARCH & THERAPY. 16(1).

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PhD Thesis

Towards the engineering of the plant endoplasmic reticulum for sustainable production of specialized metabolites

Elke Clicque (UGent)

(2025)

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A human-specific, concerted repression of microcephaly genes contributes to radiation-induced growth defects in cortical organoids

Jessica Honorato Ribeiro (UGent) , Emre Etlioglu, Jasmine Buset, Ann Janssen, Hanne Puype (UGent) , Lisa Berden, Andre Claude Mbouombouo Mfossa, Winnok H. De Vos, Vanessa Vermeirssen (UGent) , Sarah Baatout (UGent) , et al.

(2025) ISCIENCE. 28(2).

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Miscellaneous
open access

DNA damage-associated vesicle production in Stenotrophomonas maltophilia is mediated by a cryptic tailocin endolysin

Darshan Chandramowli (UGent) , Jolien Vitse, Stephan Stremersch (UGent) , Koen Raemdonck (UGent) , Kevin Braeckmans (UGent) and Bart Devreese (UGent)

(2025) BIORXIV.

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Functional validation of a novel STAT3 ‘variant of unknown significance’ identifies a new case of STAT3 GOF syndrome and reveals broad immune cell defects

Joseph Mackie, Daniel Suan, Peter McNaughton, Filomeen Haerynck (UGent) , Michael O’Sullivan, Antoine Guerin, Cindy S Ma and Stuart G Tangye

(2025) CLINICAL AND EXPERIMENTAL IMMUNOLOGY. 219(1).

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No winter halt in below-ground wood growth of four angiosperm deciduous tree species

Lorene J. Marchand, Jozica Gricar, Paolo Zuccarini, Inge Dox, Bertold Marien, Melanie Verlinden, Thilo Heinecke, Peter Prislan, Guillaume Marie, Holger Lange, et al.

(2025) NATURE ECOLOGY & EVOLUTION. 9. p.386-394

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PhD Thesis

Expanding the toolbox of quorum sensing switches toward the creation of two-stage fermentation processes

Jasmine De Baets (UGent)

(2025)

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A1
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Quantifying synthetic bacterial community composition with flow cytometry : efficacy in mock communities and challenges in co-cultures

Fabian Mermans (UGent) , Ioanna Chatzigiannidou, Wim Teughels and Nico Boon (UGent)

(2025) MSYSTEMS. 10(1).

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A1
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Enabling high-throughput quantitative wood anatomy through a dedicated pipeline

Jan Van den Bulcke (UGent) , Louis Verschuren (UGent) , Ruben De Blaere (UGent) , Simon Vansuyt (UGent) , Maxime Dekegeleer (UGent) , Pierre Kibleur (UGent) , Olivier Pieters (UGent) , Tom De Mil (UGent) , Wannes Hubau (UGent) , Hans Beeckman, et al.

(2025) PLANT METHODS. 21(1).

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Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande Moortele (UGent) , Bram Devlaminck, Simon Van de Vyver (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.949-954

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A1
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Proteomics- and metabolomics-based analysis of the regulation of germination in Norway maple and sycamore embryonic axes

Ewa Marzena Kalemba, Sara Dufour (UGent) , Kris Gevaert (UGent) , Francis Impens (UGent) and Patrice Meimoun

(2025) TREE PHYSIOLOGY. 45(2).

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PhD Thesis

Exploring the age-dependent transcriptional changes during root apical meristem development

Yanbiao Sun (UGent)

(2025)

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Impact of restraining position on tonic immobility in broiler chickens and mule ducks

Usama T. Mahmoud, Frank Tuyttens (UGent) , Mostafa Farghal, Ghada Abd El-Reda and Ramadan D. EL Shoukary

(2025) APPLIED ANIMAL BEHAVIOUR SCIENCE. 282.

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A1
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Welfare of horses during killing for purposes other than slaughter

Soren Saxmose Nielsen, Julio Alvarez, Anette Boklund, Sabine Dippel, Fernanda Dorea, Jordi Figuerola, Mette Herskin, Miguel Angel Miranda Chueca, Eleonora Nannoni, Romolo Nonno, et al.

(2025) EFSA JOURNAL. 23(1).

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A molecular survey of the occurrence of coffee berry disease resistant coffee cultivars near the wild gene pool of Arabica coffee in its region of origin in Southwest Ethiopia

Yves Bawin, Beyene Zewdie, Biruk Ayalew, Isabel Roldán-Ruiz (UGent) , Steven B. Janssens, Ayco J. M. Tack, Sileshi Nemomissa, Kassahun Tesfaye, Kristoffer Hylander, Olivier Honnay, et al.

(2025) MOLECULAR ECOLOGY RESOURCES.

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Miscellaneous

Front cover : optoelectronic properties and fluorescence lifetime imaging application of donor‐acceptor dyads derived from 2,6‐dicarboxyBODIPY (Chem. Eur. J. 10/2025)

Aimee Sheehan, Irina Okkelman (UGent) , Geoffrey Groslambert, Christophe Bucher, Ruslan Dmitriev (UGent) and Mikhail A. Filatov

(2025) CHEMISTRY-A EUROPEAN JOURNAL. 31(10).

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PhD Thesis

Advances in multiplex digital PCR data analysis : from clustering to uncertainty quantification

Yao Chen (UGent)

(2025)

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A1
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Impact of pneumatic tube transportation on the aggregation of monoclonal antibodies in clinical practice

Michaela Cohrs (UGent) , Nele Clottens (UGent) , Pieter Ramaut (UGent) , Kevin Braeckmans (UGent) , Stefaan De Smedt (UGent) , Tieneke Bauters (UGent) and Hristo Svilenov (UGent)

(2025) EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES. 204.

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A1
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Revealing RB1 loss in an emerging entity : report of two cases of PRRX1-rearranged mesenchymal tumours

Fleur Cordier (UGent) , Sharareh Fadaei, Liesbeth Ferdinande (UGent) , Frederick Dochy, Lieve Vanwalleghem, Karolien Van Den Bossche, Siebe Loontiens (UGent) , Joni Van der Meulen (UGent) , Nadine Van Roy (UGent) , Jo Van Dorpe (UGent) , et al.

(2025) JOURNAL OF CLINICAL PATHOLOGY. 78(3). p.154-160

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A living sarcoma biobank for translational research purposes

Stefanie Gijsels (UGent) , Merlijn Vekeman, Suzanne Fischer (UGent) , David Creytens (UGent) , Alexander Ackerman, Anaïs Ongenaet (UGent) , Laurens Boi, Eline Segers, Jens De Temmerman (UGent) , Francesca Casteur, et al.

(2025) Ghent University Department of Human Structure and Repair Research Symposium 2025, Abstracts.

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A1
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Diagnostic utility of ERG immunostaining in dermatofibroma : be aware of ERG expression in cellular neurothekeoma

Fleur Cordier (UGent) , Liesbeth Ferdinande (UGent) , Jo Van Dorpe (UGent) and David Creytens (UGent)

(2025) JOURNAL OF CLINICAL PATHOLOGY.

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Intrinsic cues guiding changes in division orientation in the Arabidopsis root meristem : a formative experience

Nataliia Konstantinova (UGent) , Claudia von der Mark (UGent) and Bert De Rybel (UGent)

(2025) JOURNAL OF EXPERIMENTAL BOTANY. 76(6). p.1546-1552

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Miscellaneous
open access

Study of spider flower C‐lignin reveals two novel monolignol transporters

Caroline Van Beirs (UGent) and Bartel Vanholme (UGent)

(2025) NEW PHYTOLOGIST. 246(4). p.1420-1422

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A1
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Autogene cevumeran with or without atezolizumab in advanced solid tumors : a phase 1 trial

Juanita Lopez, Thomas Powles, Fadi Braiteh, Lillian L. Siu, Patricia LoRusso, Claire F. Friedman, Ani S. Balmanoukian, Michael Gordon, Jeffrey Yachnin, Sylvie Rottey (UGent) , et al.

(2025) NATURE MEDICINE. 31(1). p.152-164

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A1
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Prognostication of brain-metastasized patients receiving subsequent systemic therapy : a single-center long-term follow-up

Tijl Vermassen (UGent) , Charlotte Van Parijs, Stijn De Keukeleire (UGent) , Katrien Vandecasteele (UGent) and Sylvie Rottey (UGent)

(2025) CURRENT ONCOLOGY. 32(2).

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Miscellaneous

Vismigratie op tijgebonden mondingen van onbevaarbare waterlopen van 1ste categorie : een case studie op de Driesesloot

Sarah Broos (UGent) , Pieterjan Verhelst (UGent) , David Buysse, Simon Plaetinck, Diederik Rosseel, Nico De Maerteleire, Sébastien Pieters and Johan Coeck

(2025) In Rapporten van het Instituut voor Natuur- en Bosonderzoek 2025 1.

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Latin America : a hub for agrobiotechnological innovations

Maria Eugenia Segretin, Gabriela Cynthia Soto and Christian Lorenzo (UGent)

(2025) ANNALS OF BOTANY. 135(4). p.629-642

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Interactive effects of genotype, nitrogen and sulfur fertilization on buckwheat starch properties : composition, functionality and gelatinization

Licheng Gao (UGent) , Geert Haesaert (UGent) , Filip Van Bockstaele (UGent) , Pieter Vermeir (UGent) and Mia Eeckhout (UGent)

(2025) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. 308(part 4).

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Upregulation versus loss of function of NTRK2 in 44 affected individuals leads to 2 distinct neurodevelopmental disorders

Eva Berger, Robin-Tobias Jauss, Judith D. Ranells, Emir Zonic, Lydia von Wintzingerode, Ashley Wilson, Johannes Wagner, Annabelle Tuttle, Amanda Thomas-Wilson, Björn Schulte, et al.

(2025) GENETICS IN MEDICINE.

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BioArchLinux : community-driven fresh reproducible software repository for life sciences

Guoyi Zhang, Pekka Ristola, Han Su, Bipin Kumar, Boyu Zhang, Yujin Hu, Michael G. Elliot, Viktor Drobot, Jie Zhu, Jens Staal (UGent) , et al.

(2025) BIOINFORMATICS. 41(3).

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A positive-sense single-stranded RNA virus acquired a negative-sense open reading frame through recombination

Xuan Dong, Fan Zhang, Yiting Wang, Cixiu Li, Xuan Li, Chengyan Zhou, Guohao Wang, Zhongshuai Tian, Jing Gao, Hu Zhou, et al.

(2025) PLOS PATHOGENS. 21(4).

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PhD Thesis

Induced resistance in rice against the root-knot nematode meloidogyne graminicola

Farzana Haque Tumpa (UGent)

(2025)

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A1
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PTMVision : an interactive visualization webserver for post-translational modifications of proteins

Simon Hackl, Caroline Jachmann (UGent) , Mathias Witte Paz, Theresa Anisja Harbig, Lennart Martens (UGent) and Kay Nieselt

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.919-928

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A1
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Prevalence and clinical correlates of Gardnerella spp., Fannyhessea vaginae, Lactobacillus crispatus and L. iners in pregnant women in Bukavu, Democratic Republic of the Congo

Lisa Himschoot (UGent) , Guy Mulinganya, Tess Rogier (UGent) , Ghislain Bisimwa, Freddy Kampara, Yvette Kujirakwinja, Jules Mongane, Innocent Mubalama, Steven Callens (UGent) , Mario Vaneechoutte (UGent) , et al.

(2025) FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 14.

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Seabed microplastics in the European continental shelf : unravelling physical and biological transport pathways and reciprocal fauna–polymer relationships

Gabriella Pantò (UGent) , Ann Vanreusel (UGent) , Maaike Vercauteren (UGent) , Jana Asselman (UGent) and Carl Van Colen (UGent)

(2025) ENVIRONMENTAL POLLUTION. 365.

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A1
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Gonadal function and pathology in 17beta-HSD 3 and 5alpha-reductase deficiency

LS Boogers, HT Bruggenwirth, KP Wolffenbuttel, R Hersmus, J Bryce, SF Ahmed, AK Lucas-Herald, F Baronio, Martine Cools (UGent) , M Ellaithi, et al.

(2025) EUROPEAN JOURNAL OF ENDOCRINOLOGY. 192(1). p.34-45

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A1
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Exploring the tomato root protein network exploited by core type 3 effectors from the Ralstonia solanacearum species complex

Joren De Ryck, Veronique Jonckheere (UGent) , Brigitte De Paepe, Annick De Keyser (UGent) , Nemo Peeters, Johan Van Vaerenbergh, Jane Debode (UGent) , Petra Van Damme (UGent) and Sofie Goormachtig (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.696-709

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A1
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Early detection of OXA-48 producing Klebsiella pneumoniae with the use of rapid antibiotic susceptibility testing

Emilie De Muynck, Stien Vandendriessche (UGent) , Anne-Sophie Messiaen (UGent) , Kristen Decommer, Diana Huis in 't Veld (UGent) , Jan De Waele (UGent) and Jerina Boelens (UGent)

(2025) EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES. 44. p.729-732

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Volumetric bioprinting of the osteoid niche

Jessie Duquesne (UGent) , Laurens Parmentier (UGent) , Edward Vermeersch (UGent) , Flora Lemaire, Jung Won Seo (UGent) , Ruslan Dmitriev (UGent) and Sandra Van Vlierberghe (UGent)

(2025) BIOFABRICATION. 17(2).

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MAP kinase signaling at the crossroads of inflammasome activation

Alex Vervaeke (UGent) and Mohamed Lamkanfi (UGent)

(2025) IMMUNOLOGICAL REVIEWS. 329(1).

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The use of miniaturised bluetooth low energy proximity loggers to study contacts among small rodents in agricultural settings

Florian Huels, Bram Vanden Broecke (UGent) , Vincent Sluydts, Lucinda Kirkpatrick, Ivan Herrera Olivares, Hendrik Ennen, Dries Vermeiren, Herwig Leirs and Jens Jacob

(2025) PLOS ONE. 20(1).

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A1
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The selective estrogen receptor modulator clomiphene inhibits sterol biosynthesis in Arabidopsis thaliana

Qing Wang (UGent) , Kjell De Vriese, Sandrien Desmet (UGent) , Ren Wang (UGent) , Markéta Luklová (UGent) , Qianqian Liu (UGent) , Jacob Pollier (UGent) , Qing Lu, Sarah Schlag, Walter Vetter, et al.

(2025) JOURNAL OF EXPERIMENTAL BOTANY. 76(4). p.1131-1146

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Superficial circumflex iliac artery (SCIA) perforator flap for shaft-only phalloplasty : surgical technique and outcomes

Kristin B. de Haseth, Danny A. Young-Afat, Sterre E. Mokken, Floyd W. S. Timmermans, Marlon Buncamper (UGent) , Matthijs Botman, Brechje L. Ronkes, Garry L. S. Pigot, Mark-Bram Bouman and Wouter B. Vd Sluis

(2025) INTERNATIONAL JOURNAL OF TRANSGENDER HEALTH.

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Tophaceous gout mimicking a neoplasm of the patella

Gwendolyn Vuurberg, Jacky W.J. de Rooy and Filip Vanhoenacker (UGent)

(2025) SEMINARS IN MUSCULOSKELETAL RADIOLOGY. 29(01). p.134-138

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Filter-aided extracellular vesicle enrichment (FAEVEr) for proteomics

Jarne Pauwels (UGent) , Tessa Van de Steene (UGent) , Jana Van de Velde, Freya De Muyer (UGent) , Danaë De Pauw (UGent) , Femke Baeke (UGent) , Sven Eyckerman (UGent) and Kris Gevaert (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(2).

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Proximal partners of the organellar N-terminal acetyltransferase NAA60 : insights into Golgi structure and transmembrane protein topology

Sebastian Tanco (UGent) , Veronique Jonckheere (UGent) , Arun Kumar Tharkeshwar Raghunath, Annelies Bogaert, Kris Gevaert (UGent) , Wim Anneart and Petra Van Damme (UGent)

(2025) OPEN BIOLOGY. 15(2).

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PhD Thesis

Myxovirus resistance (Mx) interacting proteins

Georgios Moschonas (UGent)

(2025)

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Folate depletion impact on the cell cycle results in restricted primary root growth in Arabidopsis

Jolien De Lepeleire, Ratnesh Mishra (UGent) , Jana Verstraete, José Antonio Pedroza-Garcia (UGent) , Christophe Stove (UGent) , Lieven De Veylder (UGent) and Dominique Van Der Straeten (UGent)

(2025) PLANT MOLECULAR BIOLOGY. 115(2).

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Diversity of mycotoxins in stored paddy rice : contamination patterns in the Mekong Delta, Vietnam

Lien Thi Kim Phan, Thuy Thi Ngoc Nguyen, Thien Thi Thanh Tran and Sarah De Saeger (UGent)

(2025) TOXINS. 17(1).

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Bridging the diversity between 16S rRNA amplicon sequencing and cultivation studies

Michiel Van de Vliet (UGent) , Charlotte Peeters (UGent) , Margo Cnockaert (UGent) , Lisa Joos (UGent) , Marie Joossens (UGent) and Peter Vandamme (UGent)

(2025) BSM Annual Symposium 2025, Abstracts. p.139-139

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Novel iminosugar enzymes and products through metagenomics

Anne-Sofie De Rop (UGent) , Maarten De Mol (UGent) , Sofie De Maeseneire (UGent) , Inari Willems, Marieke Mispelaere, Paco Hulpiau (UGent) and Wim Soetaert (UGent)

(2025) BSM Annual Symposium 2025, Abstracts.

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Glycolipid amphiphiles produced by Starmerella bombicola as multifunctional preservatives : opportunities and challenges

Martijn Castelein (UGent) , Sophie Roelants (UGent) and Wim Soetaert (UGent)

(2025) BSM Annual Symposium 2025, Abstracts.

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Skin microbiome-editing with novel antibiotics towards lower mosquito attraction

Magali De Muynck (UGent) , Joni Bert (UGent) , Roberto Vázquez (UGent) , Chris Callewaert (UGent) , Marie Joossens (UGent) and Yves Briers (UGent)

(2025) BSM Annual Symposium 2025, Abstracts.

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Campylobacter infection differences associated with characteristic fecal microbiome signatures of Ethiopian under-five children with acute diarrhea

Wondemagegn Mulu Lingerew (UGent) , Doris Vandeputte (UGent) , Kurt Houf (UGent) , Mulugeta Kibret and Marie Joossens (UGent)

(2025) BSM Annual Symposium 2025, Abstracts.

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PhD Thesis

Inference and evolutionary significance of ancient polyploidy in plants

Hengchi Chen (UGent)

(2025)

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PhD Thesis

Towards rice multibiofortification : uncovering and engineering vitamins B1 and B2 pathways

Maria Vicente Faustino (UGent)

(2025)

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Poly(2-alkyl-2-oxazoline) hydrogels as synthetic matrices for multicellular spheroid and intestinal organoid cultures

Robin Vanhoeijen (UGent) , Irina Okkelman (UGent) , Nette Rogier, Tomáš Sedlačík (UGent) , Daniel Stöbener (UGent) , Bert Devriendt (UGent) , Ruslan Dmitriev (UGent) and Richard Hoogenboom (UGent)

(2025) BIOMACROMOLECULES. 26(3). p.1860-1872

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Expanding the genetic landscape of Usher syndrome type IV caused by pathogenic ARSG variants

Miriam Bauwens (UGent) , Vincent De Man, Isabelle Audo, Irina Balikova, Wadih M. Zein, Vasily Smirnov, Sebastian Held, Sascha Vermeer, Elke Loos, Julie Jacob, et al.

(2025) CLINICAL GENETICS. 107(1). p.44-55

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Conference Paper
open access

Campylobacter infection differences associated with characteristic fecal microbiome signatures of Ethiopian under-five children with acute diarrhea

Wondemagegn Mulu Lingerew (UGent) , Doris Vandeputte (UGent) , Kurt Houf (UGent) , Mulugeta Kibret and Marie Joossens (UGent)

(2025) Annual Symposium 2025 amAIzing Microbiology: demystifying AI for all microbiologists. p.29-29

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Cell and transcriptomic diversity of infrapatellar fat pad during knee osteoarthritis

Hayley Peters, Pratibha Potla, Jason S. Rockel, Teodora Tockovska, Chiara Pastrello, Igor Jurisica, Keemo Delos Santos, Shabana Vohra, Noah Fine, Starlee Lively, et al.

(2025) ANNALS OF THE RHEUMATIC DISEASES. 84(2). p.351-367

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Deciphering the biosynthetic pathway of triterpene saponins in Prunella vulgaris

Si‐Jie Liu, Zhengtai Liu, Bing‐Yan Shao, Tao Li, Xinning Zhu, Ren Wang, Lei Shi, Sheng Xu, Yves Van de Peer (UGent) and Jia‐Yu Xue

(2025) PLANT JOURNAL. 121(2).

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A1
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Transgene‐free genome editing in poplar

Lennart Hoengenaert (UGent) , Chantal Anders (UGent) , Jan Van Doorsselaere (UGent) , Ruben Vanholme (UGent) and Wout Boerjan (UGent)

(2025) NEW PHYTOLOGIST.

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Coumarin promotes hypocotyl elongation in light-grown Arabidopsis thaliana seedlings by enhancing brassinosteroid signalling in an auxin-dependent manner

Stan Van Praet, Annalisa Rizza, Bijun Tang, Congwei Xie (UGent) , Alexander Jones, Dirk Inzé (UGent) , Bartel Vanholme (UGent) and Stephen Depuydt (UGent)

(2025) JOURNAL OF PLANT GROWTH REGULATION.

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A1
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Novel adaptive immune systems in pristine Antarctic soils

Marc W. Van Goethem, Oliver K. I. Bezuidt, Rian Pierneef, Surendra Vikram, David W. Hopkins, Thomas Aspray, Grant Hall, Stephan Woodborne, Ian D. Hogg, Trent R. Northen, et al.

(2025) SCIENTIFIC REPORTS. 15(1).

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Pupylation-based proximity labeling reveals regulatory factors in cellulose biosynthesis in Arabidopsis

Shuai Zheng, Lise C. Noack, Ouda Khammy, Andreas De Meyer (UGent) , Ghazanfar Abbas Khan, Nancy De Winne (UGent) , Dominique Eeckhout (UGent) , Daniël Van Damme (UGent) and Staffan Persson

(2025) NATURE COMMUNICATIONS. 16(1).

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PhD Thesis

Investigating protein flexibility using molecular dynamics simulations of α-1 acid glycoprotein and large-scale normal mode analysis of AlphaFold models

Bhawna Dixit (UGent)

(2025)

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MariClus : your one-stop platform for information on marine natural products, their gene clusters and producing organisms

Maarten De Mol (UGent) , Cedric Hermans, Marieke Mispelaere, Anne-Sofie De Rop (UGent) , Jeltien Rombaut (UGent) , Tesneem Nusayr, Rebecca Creamer, Sofie De Maeseneire (UGent) , Wim Soetaert (UGent) and Paco Hulpiau (UGent)

(2025) 5th Natural Product Discovery and Development Conference, Abstracts.

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A2
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Enhancing sulfate reduction efficiency in microbial electrolysis cells : the impact of mixing conditions and heavy metal concentrations on functional genes, cell activity, and community structure in sulfate-laden wastewater treatment

Weiming Chen, Ke Shi, Duc Viet Nguyen (UGent) , Jianliang Xue, Qing Jiang, Di Wu (UGent) , Yanlu Qiao and An Liu

(2025) ACS ES&T ENGINEERING. 5(1). p.1-11

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Striking a balance : new perspectives on homeostatic dendritic cell maturation

Victor Bosteels (UGent) and Sophie Janssens (UGent)

(2025) NATURE REVIEWS IMMUNOLOGY. 25(2). p.125-140

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A1
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The pseudorabies virus UL13 protein kinase triggers phosphorylation of the RNA demethylase FTO, which is associated with FTO-dependent suppression of interferon-stimulated gene expression

Ruth Verhamme (UGent) , Robert Jansens (UGent) , Jianheng Liu, Fien Van Raemdonck (UGent) , Cliff Van Waesberghe (UGent) , Luke Nicholson, Samie R. Jaffrey and Herman Favoreel (UGent)

(2025) JOURNAL OF VIROLOGY. 99(2).

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A colourful world with a dark future : unregulated trade as an emerging threat for woodlice (Isopoda: Oniscidea) of Spain

Jairo Robla, Raúl Orihuela‐Rivero, Pallieter De Smedt (UGent) , Marcos Matarredona and Lluc Garcia

(2025) INSECT CONSERVATION AND DIVERSITY. 18(2). p.161-176

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A1
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Division zone activity determines the potential of drought‐stressed maize leaves to resume growth after rehydration

Tom Van Hautegem (UGent) , Hironori Takasaki (UGent) , Christian Lorenzo (UGent) , Kirin Demuynck (UGent) , Hannes Claeys, Timothy Villers (UGent) , Heike Sprenger (UGent) , Kevin Debray (UGent) , Dries Schaumont, Lennart Verbraeken (UGent) , et al.

(2025) PLANT CELL AND ENVIRONMENT. 48(2). p.1242-1258

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A1
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Investigating chromosomal radiosensitivity in inborn errors of immunity : insights from DNA repair disorders and beyond

Elien Beyls (UGent) , Evi Duthoo (UGent) , Lynn Backers (UGent) , Karlien Claes (UGent) , [missing] RAPID Clinicians, Tessa Kerre (UGent) , B. Lambrecht, Levi Hoste (UGent) , B. Meertens, T. Van Genechten, et al.

(2025) JOURNAL OF CLINICAL IMMUNOLOGY. 45(1).

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A2
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False positive hCG testing and upper urinary tract infection

Joris Delanghe (UGent) , Valerie Pede (UGent) , Sylvie Mulliez, Hilde Vanpoucke, Marijn Speeckaert (UGent) , Danielle Vandenweghe and Kris Gevaert (UGent)

(2025) HORMONE MOLECULAR BIOLOGY AND CLINICAL INVESTIGATION.

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Interpretable machine learning models for COPD ease of breathing estimation

Thomas Kok (UGent) , John Morales, Dirk Deschrijver (UGent) , Dolores Blanco-Almazan, Willemijn Groenendaal, David Ruttens, Christophe Smeets, Vojkan Mihajlovic, Femke Ongenae (UGent) and Sofie Van Hoecke (UGent)

(2025) MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING.

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Multi-phase, multi-ethnic GWAS uncovers putative loci in predisposition to elite sprint and power performance, health and disease

Guan Wang, Noriyuki Fuku, Eri Miyamoto-Mikami, Masashi Tanaka, Motohiko Miyachi, Haruka Murakami, Braxton D. Mitchell, Errol Morrison, Ildus Ahmetov, [missing] Sportgene Research Group, et al.

(2025) BIOLOGY OF SPORT. 42(3). p.141-159

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Unlocking saponin biosynthesis in soapwort

Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Shingo Kikuchi, James Reed, Hannah Hodgson, Alex Harkess, Shengqiang Shu, et al.

(2025) NATURE CHEMICAL BIOLOGY. 21(2). p.215-226

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Assessing advances in three decades of clinical antiretroviral therapy on the HIV-1 reservoir

Irene Gonzalez-Navarro, Victor Urrea, Cristina Galvez, Maria del Carmen Garcia-Guerrero, Sara Moron-Lopez, Maria C. Puertas, Eulalia Grau, Beatriz Mothe, Lucia Bailon, Cristina Miranda, et al.

(2025) JOURNAL OF CLINICAL INVESTIGATION. 135(2).

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A1
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Identification and investigation of the intrinsic receptor activation potential and metabolization of the new Oxo-Pyridyl synthetic cannabinoid receptor agonist CH-FUBBMPDORA

Marie Deventer (UGent) , Maria Carmela Emanuele, Brianna N. Stang, Katleen Van Uytfanghe (UGent) , Jessica Masson, Xavier Bouvot, Catherine Lamoureux, Alessandro Proposito, Fabiano Reniero, Margaret V. Holland, et al.

(2025) DRUG TESTING AND ANALYSIS.

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Derivation of human toxicokinetic parameters and internal threshold of toxicological concern for tenuazonic acid through a human intervention trial and hierarchical Bayesian population modeling

Lia Visintin (UGent) , En-Hsuan Lu, Hsing-Chieh Lin, Yasmine Bader (UGent) , Truong Nhat Nguyen (UGent) , Thanos Mouchtaris-Michailidis (UGent) , Sarah De Saeger (UGent) , Weihsueh A. Chiu and Marthe De Boevre (UGent)

(2025) JOURNAL OF EXPOSURE SCIENCE AND ENVIRONMENTAL EPIDEMIOLOGY.

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A1
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Role of astrocytes and microglia in hepatic encephalopathy associated with advanced chronic liver disease : lessons from animal studies

Wouter Claeys (UGent) , Anja Geerts (UGent) , Lien Van Hoecke (UGent) , Christophe Van Steenkiste and Roosmarijn Vandenbroucke (UGent)

(2025) NEURAL REGENERATION RESEARCH. 20(12). p.3461-3475

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A1
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NF-κB regulated expression of A20 controls IKK dependent repression of RIPK1 induced cell death in activated T cells

By Scott Layzell, Alessandro Barbarulo, Geert van Loo (UGent) , Rudi Beyaert (UGent) and Benedict Seddon

(2025) CELL DEATH AND DIFFERENTIATION. 32(2). p.256-270

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Integrative assessment of total and intact HIV-1 reservoir by a 5-region multiplexed rainbow DNA digital PCR assay

Mareva Delporte (UGent) , Laurens Lambrechts (UGent) , Evy Blomme (UGent) , Willem van Snippenberg (UGent) , Sofie Rutsaert (UGent) , Maxime Verschoore (UGent) , Evelien De Smet (UGent) , Ytse Noppe (UGent) , Nele De Langhe (UGent) , Marie-Angélique De Scheerder (UGent) , et al.

(2025) CLINICAL CHEMISTRY. 71(1). p.203-214

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A1
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Human skeletal muscle fiber heterogeneity beyond myosin heavy chains

Roger Moreno-Justicia, Thibaux Van der Stede (UGent) , Ben Stocks, Jenni Laitila, Robert A. Seaborne, Alexia Van de Loock (UGent) , Eline Lievens (UGent) , Diana Samodova, Leyre Marín-Arraiza, Oksana Dmytriyeva, et al.

(2025) NATURE COMMUNICATIONS. 16(1).

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Chemogenetic modulation of the rat locus coeruleus alters hippocampal noradrenaline release and modulates perforant path-evoked responses

Sielke Caestecker (UGent) , Emma Lescrauwaet (UGent) , Kristl Vonck (UGent) , Mathieu Sprengers (UGent) , Evelien Carrette (UGent) , Paul Boon (UGent) , Lars Emil Larsen (UGent) and Robrecht Raedt (UGent)

(2025) FRONTIERS IN NEUROSCIENCE. 19.

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Time to HIV viral rebound and frequency of post-treatment control after analytical interruption of antiretroviral therapy : an individual data-based meta-analysis of 24 prospective studies

Jesper D. Gunst, Jesal Gohil, Johanthan Z. Li, Ronald J. Bosch, Andrea White, Catherine Seamon, Tae-Wook Chun, Beatriz Mothe, Kathleen Gittens, Lauren Praiss, et al.

(2025) NATURE COMMUNICATIONS. 16(1).

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About how nitrate controls nodulation : will soybean spill the bean?

Emma Guillierme (UGent) , Kris Gevaert (UGent) , Sofie Goormachtig (UGent) and Sylwia Magdalena Struk (UGent)

(2025) PLANT CELL AND ENVIRONMENT.

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PhD Thesis

Mitigation of acute hepatopancreatic necrosis disease in shrimp (Litopenaeus vannamei) culture

Md Abul Kashem (UGent)

(2025)

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A1
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Sex differences in the association between long-term ambient particulate air pollution and the intestinal microbiome composition of children

Thessa Van Pee, Liesa Engelen, Marthe De Boevre (UGent) , Muriel Derrien, Janneke Hogervorst, Roger Peró Gascón (UGent) , Michelle Plusquin, Giulia Poma, Arnau Vich I Vila, Adrian Covaci, et al.

(2025) ENVIRONMENT INTERNATIONAL. 199.

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Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Ian Engels (UGent) , Alexandra Burnett (UGent) , Prudence Robert (UGent) , Camille Pironneau (UGent) , Grégory Abrams (UGent) , Robbin Bouwmeester (UGent) , Peter Van Der Plaetsen, Kévin Di Modica, Marcel Otte, Lawrence Guy Straus, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.1907-1925

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Atypical spindle cell/pleomorphic lipomatous tumors harbor TP53 deletions in contrast with conventional spindle cell lipomas

Tony Kleijn, Baptiste Ameline, Fleur Cordier (UGent) , Wierd Kooistra, Robert van Ginkel, Barbara van Leeuwen, Lukas Been, Gilles Diercks, Ed Schuuring, Léon van Kempen, et al.

(2025) LABORATORY INVESTIGATION. In Laboratory Investigation 105(3, Supplement S). p.20-20

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Electrostatic precipitation enhances the efficacy of intraperitoneal drug delivery

Yiwen Long (UGent) , Mohammad Rahimi Gorji (UGent) , Wouter Willaert (UGent) and Wim Ceelen (UGent)

(2025) OncoPoint Symposium, 11th, Abstracts.

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A1
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Otolith increments in common sole (Solea solea) reveal fish growth plasticity to temperature

Tuan-Anh Bui (UGent) , Marleen De Troch (UGent) , Jan Jaap Poos, Adriaan Rijnsdorp, Bruno Ernande, Karen Bekaert, Kélig Mahé, Kelly Diaz and Jochen Depestele

(2025) ESTUARINE COASTAL AND SHELF SCIENCE. 312.

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Conference Paper
C3
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Prostate-specific membrane antigen-targeted radionuclide therapy as adjunct to Immune checkpoint Inhibition in an immunocompetent murine model for oral squamous cell carcinoma

Michaël Henrotte (UGent) , David Creytens (UGent) , Filip De Vos (UGent) , Benedicte Descamps (UGent) , Lindsey Devisscher (UGent) , Wouter Huvenne (UGent) , Ken Kersemans (UGent) , Sara Neyt (UGent) , Sylvie Rottey (UGent) , Michael Saerens (UGent) , et al.

(2025) 11th European Congress on Head & Neck Oncology, Abstracts.

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Variant of uncertain significance testing in zebrafish : a proof of concept using a COL1A2 variant as example

Michiel Vanhooydonck (UGent) , Sophie Debaenst (UGent) , Eva Vanbelleghem (UGent) , Hanna De Saffel (UGent) , Delfien Syx (UGent) , Andy Willaert (UGent) , Patrick Sips (UGent) , Paul Coucke (UGent) and Bert Callewaert (UGent)

(2025) Belgian Society for Human Genetics (BeSHG) Annual Meeting 2025, Abstracts.

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Unlocking a decade of research on embryo-derived extracellular vesicles : discoveries made and paths ahead

Islam M. Saadeldin, Krishna Chaitanya Pavani (UGent) , Juri Gnagnarelli (UGent) , Seif Ehab, Abdullah M. Assiri and Ann Van Soom (UGent)

(2025) STEM CELL REVIEWS AND REPORTS. 21(3). p.698-708

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Distinct interspecies thermal resistance strategies exhibited by euplanktonic, tychoplanktonic and benthic diatoms under marine heatwaves

Feichao Du, Yuhang Li, Gust Bilcke (UGent) , Shinya Sato and Kuidong Xu

(2025) MARINE ENVIRONMENTAL RESEARCH. 204.

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Intestinal mucus : the unsung hero in the battle against viral gastroenteritis

Waqar Saleem (UGent) , Ateeqa Aslam (UGent) , Mehlayl Tariq and Hans Nauwynck (UGent)

(2025) GUT PATHOGENS. 17(1).

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Antibiotic resistance and antibiotic resistance genes in Staphylococcus aureus isolates from hospital patients in Islamabad, Pakistan

Saima Batool, Waqar Saleem (UGent) , Khurshid Ahmad and Saeed-ul-Hassan Khan

(2025) PAKISTAN JOURNAL OF ZOOLOGY.

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A1
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Asynchronous xylogenesis among and within tree species in the central Congo Basin

Pauline Hicter (UGent) , Hans Beeckman, Basile Luse Belanganayi, Tom De Mil (UGent) , Jan Van den Bulcke (UGent) , Peter Kitin, Marijn Bauters (UGent) , Kévin Lievens, Donatien Musepena, José Mbifo Ndiapo, et al.

(2025) BMC PLANT BIOLOGY. 25(1).

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A1
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Outcome in critically ill dogs and dogs with acute kidney injury based on neutrophil gelatinase‐associated lipocalin and tissue inhibitor of metalloproteinase‐2

Elisabeth Dorn, Ann Biscop, Nausikaa Devriendt (UGent) , Donatienne Castelain (UGent) , Kristel Demeyere (UGent) , Emmelie Stock (UGent) , Evelyne Meyer (UGent) and Dominique Paepe (UGent)

(2025) JOURNAL OF VETERINARY INTERNAL MEDICINE. 39(2).

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Effect of characteristic inflammatory and structural pelvic magnetic resonance imaging lesions on expert assessment of axial juvenile spondyloarthritis

Adam Mayer, Timothy G. Brandon, Amita Aggarwal, Ruben Burgos-Vargas, Robert A. Colbert, Gerd Horneff, Rik Joos, Ronald M. Laxer, Kirsten Minden, Angelo Ravelli, et al.

(2025) JOURNAL OF RHEUMATOLOGY. 52(2). p.165-172

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Miscellaneous
open access

Editorial : XVII SOLANACEAE2022 meets the 2020 decade challenges

Ifigeneia Mellidou, Antonio Granell, Hiroshi Ezura, Panagiotis Kalaitzis, Nathalie Gonzalez, Alain Goossens (UGent) , Mondher Bouzayen and Angelos K. Kanellis

(2025) FRONTIERS IN PLANT SCIENCE. 16.

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A1
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Flavonoids and anthocyanins in seagrasses : implications for climate change adaptation and resilience

Jana Botes, Xiao Ma (UGent) , Jiyang Chang (UGent) , Yves Van de Peer (UGent) and Dave Kenneth Berger

(2025) FRONTIERS IN PLANT SCIENCE. 15.

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PhD Thesis

Omics approaches to study the microbial diversity and functioning in Antarctic and High-Arctic lakes and soils

Jill De Visscher (UGent)

(2025)

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Journal Article
A2
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An extended miRNA repertoire in Rattus norvegicus

Julienne Lehmann (UGent) , Ali Yazbeck, Jörg Hackermüller and Sebastian Canzler

(2025) FRONTIERS IN BIOINFORMATICS. 5.

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A1
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Trends to shorter diagnostic delay in spondyloarthritis patients during the last decades and association with clinical presentation : data from ASAS-COMOSPA study

Rodolfo Perez-Alamino, Hernan Maldonado-Ficco, Anna Molto, Christian Waimann, Jose Maldonado-Cocco, Maxime Dougados, Robert Landewe, Desiree van der Heijde, Filip Van den Bosch (UGent) , Gaëlle Varkas (UGent) , et al.

(2025) RMD OPEN. 11(1).

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PhD Thesis

Advanced production and purification technologies for biobased organic acids

Sinah Tönjes (UGent)

(2025)

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A1
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Real-time multispectral imaging for intraoperative monitoring of coronary artery bypass graft patency

Jens De Winne (UGent) , Danilo Babin (UGent) , Hiep Luong (UGent) , Siri Luthman, Aleksandar M. Milosavljević, Živojin Jonjev, Jan Hrubik and Lazar Velicki

(2025) JOURNAL OF BIOMEDICAL OPTICS. 30(03).

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Miscellaneous
open access

Reproducibility of extracellular vesicle research

Rossella Crescitelli, Juan Falcon‐Perez, An Hendrix (UGent) , Metka Lenassi, Le Thi Nguyet Minh, Takahiro Ochiya, Nicole Noren Hooten, Ursula Sandau, Clotilde Théry and Rienk Nieuwland

(2025) JOURNAL OF EXTRACELLULAR VESICLES. 14(1).

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A1
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The Spheroid Light Microscopy Image Atlas for morphometrical analysis of three-dimensional cell cultures

Eva Blondeel (UGent) , Arne Peirsman (UGent) , Stephanie Vermeulen (UGent) , Filippo Piccinini, Felix De Vuyst (UGent) , Diogo Miguel Monteiro Estêvão (UGent) , Sayida Al-Jamei, Martina Bedeschi, Gastone Castellani, Tânia Cruz, et al.

(2025) SCIENTIFIC DATA. 12(1).

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A1
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Echinacoside reduces intracellular c-di-GMP levels and potentiates tobramycin activity against Pseudomonas aeruginosa biofilm aggregates

Yu-Ming Cai, Feng Hong, Amber De Craemer, Jacob George Malone, Aurélie Crabbé (UGent) and Tom Coenye (UGent)

(2025) NPJ BIOFILMS AND MICROBIOMES. 11(1).

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A1
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A reappraisal of IL-9 in inflammation and cancer

Fabian Bick (UGent) , Christophe Blanchetot, Bart Lambrecht (UGent) and Martijn Schuijs (UGent)

(2025) MUCOSAL IMMUNOLOGY. 18(1). p.1-15

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Wavelet thresholding on independent subspace factorizations of spatially indexed wide functional data for robust estimation of cortical activity

Marc Vidal (UGent) and Ana M. Aguilera

(2025) MATHEMATICS AND COMPUTERS IN SIMULATION. 232. p.346-361

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Fingerprinting sediment sources using fallout radionuclides demonstrates that subsoil provides the major source of sediment in sub-humid Ethiopia

Tirusew Abere Chekol (UGent) , Olivier Evrard, Thomas Chalaux‑Clergue, Enyew Adgo, Hanibal Lemma, Elie Verleyen (UGent) and Amaury Frankl (UGent)

(2025) JOURNAL OF SOILS AND SEDIMENTS. 25(3). p.1008-1021

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Autistic behavior is a common outcome of biallelic disruption of PDZD8 in humans and mice

Andreea D. Pantiru, Stijn Van de Sompele (UGent) , Clemence Ligneul, Camille Chatelain, Christophe Barrea, Jason P. Lerch, Beatrice M. Filippi, Serpil Alkan, Elfride De Baere (UGent) , Jamie Johnston, et al.

(2025) MOLECULAR AUTISM. 16(1).

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Quantitative vessel mapping on increment cores : a critical comparison of image acquisition methods

Richard L. Peters, Stefan Klesse, Jan Van den Bulcke (UGent) , Lisa M. Y. Jourdain, Georg von Arx, Alba Anadon-Rosell, Jan Krejza, Ansgar Kahmen, Marina Fonti, Angela Luisa Prendin, et al.

(2025) FRONTIERS IN PLANT SCIENCE. 16.

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A1
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Impact of IgG Fc glycosylation on disease dynamics in patients with primary Sjögren disease

Helena Achten (UGent) , Leander Meuris (UGent) , Liselotte Deroo, Matthias Jarlborg (UGent) , Tine Decruy (UGent) , Joke Deprez (UGent) , Emilie Dumas (UGent) , Kristel De Boeck (UGent) , Eva Genbrugge (UGent) , Wouter Bauters (UGent) , et al.

(2025) ARTHRITIS & RHEUMATOLOGY. 77(3). p.311-321

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A1
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Upadacitinib in active non-radiographic axial spondyloarthritis : 2-year data from the phase 3 SELECT-AXIS 2 study

Filip Van den Bosch (UGent) , Atul Deodhar, Denis Poddubnyy, Walter P. Maksymowych, Desiree van der Heijde, Tae-Hwan Kim, Mitsumasa Kishimoto, Xenofon Baraliakos, Xianwei Bu, Ivan Lagunes-Galindo, et al.

(2025) ARTHRITIS RESEARCH & THERAPY. 27(1).

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A1
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Decadal trends in macrobenthic communities in offshore wind farms : disentangling turbine and climate effects

Christelle Jammar (UGent) , Abril Reynés Cardona (UGent) , Jan Vanaverbeke (UGent) , Nene Lefaible (UGent) , Tom Moens (UGent) , Steven Degraer (UGent) and Ulrike Braeckman (UGent)

(2025) JOURNAL OF SEA RESEARCH. 203.

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A1
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Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

William T. Scott, Siemen Rockx, Quinten Mariën (UGent) , Alberte Regueira López (UGent) , Pieter Candry, Ramon Ganigué (UGent) , Jasper J. Koehorst and Peter J. Schaap

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.649-660

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PhD Thesis
open access

Membrane integrity monitoring for drinking water production using fluorescent tracers, natural viruses and flow cytometry

Dwani Venkataswamy Gowda (UGent)

(2025)

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A1
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ETHYLENE RESPONSE FACTOR6, a central regulator of plant growth in response to stress

Ting Li, Zhen Peng, Du Kangxi, Dirk Inzé (UGent) and Marieke Dubois (UGent)

(2025) PLANT CELL AND ENVIRONMENT. 48(1). p.882-892

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Prevalence and incidence of uveitis in patients with spondyloarthritis : the impact of the biologics era : data from the international ASAS-COMOSPA study

Hernan Maldonado-Ficco, Clementina Lopez-Medina, Rodolfo Perez-Alamino, Christian A. Waimann, Jose A. Maldonado-Cocco, Anna Molto, Maxime Dougados, Robert B. M. Landewe, Desiree van der Heijde and Filip Van den Bosch (UGent)

(2025) RHEUMATOLOGY.

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A1
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Damage thresholds and population dynamics of the root-knot nematode, Meloidogyne javanica, on selected chickpea cultivars from Ethiopia

Habtamu Kefelegn Shiferaw (UGent) , Beira Hailu Meressa, Wim Wesemael (UGent) , Wim Bert (UGent) and Misghina Goitom Teklu (UGent)

(2025) NEMATOLOGY. 27(1). p.73-87

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GelMA as scaffold material for epithelial cells to emulate the small intestinal microenvironment

Inez Roegiers (UGent) , Tom Gheysens (UGent) , Manon Minsart (UGent) , Pieter De Clercq (UGent) , Kim Vanbeversluys, Nikoletta Rać, Grzegorz Stroka, Jana De Croock, Tom Van de Wiele (UGent) , Peter Dubruel (UGent) , et al.

(2025) SCIENTIFIC REPORTS. 15(1).

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Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151

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A1
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TFAP2E is implicated in central nervous system, orofacial and maxillofacial anomalies

Jeshurun C. Kalanithy, Enrico Mingardo, Jil D. Stegmann, Ramgopal Dhakar, Tikam Chand Dakal, Jill A. Rosenfeld, Wen-Hann Tan, Stephanie A. Coury, Audrey C. Woerner, Jessica Sebastian, et al.

(2025) JOURNAL OF MEDICAL GENETICS. 62(2). p.126-137

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CCR1 inhibition sensitizes multiple myeloma cells to glucocorticoid therapy

Bert Luyckx (UGent) , Maaike Van Trimpont (UGent) , Fien Declerck, Eleni Staessens (UGent) , Annick Verhee (UGent) , Sara T'Sas (UGent) , Sven Eyckerman (UGent) , Fritz Offner (UGent) , Pieter Van Vlierberghe (UGent) , Steven Goossens, et al.

(2025) PHARMACOLOGICAL RESEARCH. 215.

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PhD Thesis

When genomes team up : a Chlamydomonas perspective on polyploidy

Lucas Prost Boxoen (UGent)

(2025)

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Efficacy and safety of twice per year depemokimab in chronic rhinosinusitis with nasal polyps (ANCHOR-1 and ANCHOR-2) : phase 3, randomised, double-blind, parallel trials

Philippe Gevaert (UGent) , Martin Desrosiers, Marjolein Cornet, Joaquim Mullol, Eugenio De Corso, Nesil Keles Turel, Jorge Maspero, Shigeharu Fujieda, Luo Zhang, Ana R Sousa, et al.

(2025) LANCET. 405(10482). p.911-926

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A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji Ke (UGent) , Vincent Pujol (UGent) , Jasper Staut (UGent) , Lotte Pollaris (UGent) , Ruth Seurinck (UGent) , Thomas Eekhout (UGent) , Carolin Seyfferth (UGent) , Maite Saura Sanchez (UGent) , Michiel Van Bel (UGent) , Marnik Vuylsteke (UGent) , et al.

(2025) CELL REPORTS. 44(2).

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Concentric-object and equiangular-object methods to perform standardized regional analysis in renal mpMRI

Luis Carlos Sanmiguel Serpa (UGent) , Pieter De Visschere (UGent) and Pim Pullens (UGent)

(2025) MAGNETIC RESONANCE MATERIALS IN PHYSICS BIOLOGY AND MEDICINE. 38. p.67-83

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The EuroFlow PIDOT external quality assurance scheme : enhancing laboratory performance evaluation in immunophenotyping of rare lymphoid immunodeficiencies

Jana Neirinck (UGent) , Malicorne Buysse (UGent) , Naděžda Brdickova, Martín Perez-Andres, Ciel De Vriendt (UGent) , Tessa Kerre (UGent) , Filomeen Haerynck (UGent) , Xavier Bossuyt, Jacques J.M. van Dongen, Alberto Orfao, et al.

(2025) CLINICAL CHEMISTRY AND LABORATORY MEDICINE. 63(3). p.621-635

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Color flow imaging microscopy improves identification of stress sources of protein aggregates in biopharmaceuticals

Michaela Cohrs (UGent) , Shiwoo Koak, Yejin Lee, Yu Jin Sung, Wesley De Neve (UGent) , Hristo Svilenov (UGent) and Utku Özbulak (UGent)

(2025) MEDICAL OPTICAL IMAGING AND VIRTUAL MICROSCOPY IMAGE ANALYSIS, MOVI 2024. In Lecture Notes in Computer Science 15371. p.86-96

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The cost of the production and release of male Aedes aegypti mosquitoes sterilised by irradiation

A. Baly, R. Gato, Z. Garcia, M. Rodriguez and Patrick Van Der Stuyft (UGent)

(2025) TROPICAL MEDICINE & INTERNATIONAL HEALTH. 30(3). p.210-218

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Anti-IL-5 treatment, but not neutrophil interference, attenuates inflammation in a mixed granulocytic asthma mouse model, elicited by air pollution

Joyceline De Volder (UGent) , Annelies Bontinck, Valerie Haelterman (UGent) , Louis Boon, Guy Joos (UGent) , Guy Brusselle (UGent) and Tania Maes (UGent)

(2025) RESPIRATORY RESEARCH. 26(1).

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Unexpected high prevalence of focal facial dermal dysplasia (FFDD) type IV is linked to a founder effect in the Belgian population

Aude Beyens (UGent) , Stefanie van de Voorde, Marta Guerreiro Santano Ramos Da Silva, Sofie De Meulemeester, Koen Devriendt, Marleen Goeteyn (UGent) , Sandra Janssens (UGent) , R. Frank Kooy, Toon Rosseel (UGent) , Sofie Symoens (UGent) , et al.

(2025) CLINICAL GENETICS. 107(5). p.579-581

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Assessment of commercial insect-based pet food products : nutrients’ concentration, labelling adequacy and determination of animal deoxyribonucleic acid (DNA)

Camila Baptista da Silva (UGent) , Elias Leocadio dos Santos Neto (UGent) , Pieter Vermeir (UGent) , Ilse De Leersnyder (UGent) , Mia Eeckhout (UGent) and Myriam Hesta (UGent)

(2025) JOURNAL OF INSECTS AS FOOD AND FEED. p.1-15

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On the function and origin of the avian renal portal shunt and its potential significance throughout evolution

Kobe Buyse (UGent) , Koen Stein, Ward De Spiegelaere (UGent) , Pieter Cornillie (UGent) , Marcus Clauss (UGent) and Geert Janssens (UGent)

(2025) BIOLOGICAL REVIEWS. 100(1). p.351-361

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Monoclonal antibodies targeting porcine macrophages are able to inhibit the cell entry of macrophage-tropic viruses (PRRSV and ASFV)

Shaojie Han (UGent) , Dayoung Oh (UGent) , Nathalie Vanderheijden (UGent) , Jiexiong Xie (UGent) , Nadège Balmelle, Marylène Tignon and Hans Nauwynck (UGent)

(2025) VIRUSES-BASEL. 17(2).

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In vitro infection model using A6 cells sets the stage for host–Batrachochytrium salamandrivorans exploration

Elin Verbrugghe (UGent) , Frank Pasmans (UGent) and An Martel (UGent)

(2025) JOURNAL OF FUNGI. 11(2).

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Nationwide screening unveils endemic Ophidiomyces ophidiicola presence in Northern Italy, mainly affecting dice snakes : evidence from contemporary and historical snake samples

Matteo Riccardo Di Nicola (UGent) , Kevin Mulder (UGent) , Elin Verbrugghe (UGent) , Federico Storniolo, Naomi Terriere (UGent) , Luca Colla, Roberto Sacchi, Giacomo Vanzo, Giovanni Zanfei, Daniele Marini, et al.

(2025) JOURNAL OF FUNGI. 11(2).

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A novel strategy for rapid, portable, and sensitive detection of Clostridium perfringens cpb2 gene using smartphone-based electrochemical DNA biosensor based on screen-printed electrodes modified with nanocomposite

Qianyue Wu, Beiying Yang, Yutang Wang, Yanyan Xiong, Jinhua Zhang, Yangping Wen and Andreja Rajkovic (UGent)

(2025) MICROCHIM ACTA. 192(4).

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Unravelling the regulatory network behind chitin degradation in Serratia marcescens

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2025) BIOLOGICAL REVIEWS.

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Heterozygous UBR5 variants result in a neurodevelopmental syndrome with developmental delay, autism, and intellectual disability

Pascale Sabeh, Samantha A. Dumas, Claudia Maios, Hiba Daghar, Marek Korzeniowski, Justine Rousseau, Matthew Lines, Andrea Guerin, John J. Millichap, Megan Landsverk, et al.

(2025) AMERICAN JOURNAL OF HUMAN GENETICS. 112(1). p.75-86

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Drug permeation through phospholipid membranes : predicting exact kinetics via path sampling methodology

Sina Safaei (UGent) and An Ghysels (UGent)

(2025) CECAM 2025 Workshop : Predicting and understanding drug-target binding kinetics via molecular simulations, Abstracts.

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Invasive fungal infections during extracorporeal membrane oxygenation

Louis Kreitmann, Stijn Blot (UGent) and Saad Nseir

(2025) INTENSIVE CARE MEDICINE. 51(2). p.428-430

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Nebulized aminoglycosides for ventilator-associated pneumonia : methodological considerations and lessons from experimental studies

Jean-Jacques Rouby, Jing Xia, Jayesh Dhanani, Gianluigi Li Bassi, Antoine Monsel, Antoni Torres, Kostoula Arvaniti, Mona Assefi, Matteo Bassetti, Stijn Blot (UGent) , et al.

(2025) JOURNAL OF INTENSIVE MEDICINE. 5(1). p.12-22

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Miscellaneous

Evaluating variants of uncertain significance in adult knock-in zebrafish : a proof of concept with a COL1A2 variant

Michiel Vanhooydonck (UGent) , Sophie Debaenst (UGent) , Eva Vanbelleghem (UGent) , Hanna De Saffel (UGent) , Delfien Syx (UGent) , Patrick Sips (UGent) , Paul Coucke (UGent) , Andy Willaert (UGent) and Bert Callewaert (UGent)

(2025) BioRxiv.

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Miscellaneous

Prime editing outperforms homology-directed repair as a tool for CRISPR-mediated variant knock-in in zebrafish

Michiel Vanhooydonck (UGent) , Elyne De Neef (UGent) , Hanna De Saffel (UGent) , Annekatrien Boel (UGent) , Andy Willaert (UGent) , Bert Callewaert (UGent) and Kathleen Claes (UGent)

(2025) BioRxiv.

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Impact of two human milk oligosaccharides and lactose on the faecal microbiome of infants with probable cow’s milk allergy

P. Van den Abbeele, R.G. Heine, Michiel Van de Vliet (UGent) , L. Favre, H.L.P. Tytgat, N. Sprenger, S. Deyaert, A. Baudot and S. Nutten

(2025) BENEFICIAL MICROBES. 16(2). p.171-185

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Digital PCR in virology : current applications and future perspectives

David Gleerup (UGent) , Wim Trypsteen (UGent) , Stephanie I. Fraley and Ward De Spiegelaere (UGent)

(2025) MOLECULAR DIAGNOSIS & THERAPY. 29. p.43-54

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PhD Thesis

Biorefineries in agricultural settings : financial sustainability at farm level and exploring their role in a transformative bioeconomy

Francesca Magnolo (UGent)

(2025)

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Affective state-dependent effects of prefrontal rTMS on the cognitive control of negative stimuli in healthy and depressed individuals

Jasmina Paneva, Teresa Schuhmann, Stefanie De Smet (UGent) , Terence De Meza, Felix Duecker and Alexander T. Sack

(2025) BRAIN STIMULATION. 18(3). p.745-752

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Consolidating Ulva functional genomics: gene editing and new selection systems

Jonas Blomme (UGent) , Júlia Arraiza (UGent) , Olivier De Clerck (UGent) and Thomas B. Jacobs (UGent)

(2025) NEW PHYTOLOGIST. 246(4). p.1710-1723

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An in-depth dataset of northwestern European arthropod life histories and ecological traits

Garben Logghe (UGent) , Femke Batsleer (UGent) , Dirk Maes, Tristan Permentier, Matty Berg, Dimitri Brosens, Stijn Cooleman, Pallieter De Smedt (UGent) , Jonas Hagge, Jorg Lambrechts, et al.

(2025) BIODIVERSITY DATA JOURNAL. 13.

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Advancing aquaculture probiotic discovery via an innovative protocol for isolation of indigenous, heat and salt tolerant, quorum quenching probiotic candidates

Philip Rwezawula (UGent) , Wilson Waiswa Mwanja, Nick Vereecke (UGent) , Peter Bossier (UGent) and Daisy Vanrompay (UGent)

(2025) FRONTIERS IN MICROBIOLOGY. 16.

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Art–science collaborations in biotechnology research : a transdisciplinary approach

Christina Stadlbauer (UGent) , Marjan De Mey (UGent) , Katrien Schaubroeck, Nele Buyst, Varsha Paleri and Kristien Hens

(2025) TRENDS IN BIOTECHNOLOGY. 43(4). p.735-737

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Surfactant protein B-derived peptides as endosomal escape enhancers for pulmonary delivery of siRNA

Lore Herman (UGent) , Roberta Guagliardo, Agata Zamborlin (UGent) , Qiaoyu Liu (UGent) , Jesús Pérez-Gil, Stefaan De Smedt (UGent) and Koen Raemdonck (UGent)

(2025) JOURNAL OF CONTROLLED RELEASE. 381.

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Comparative analysis of tablet dissolution behavior : batch vs. continuous direct compression

Kensaku Matsunami (UGent) , Alexander Ryckaert (UGent) , Hanne Verrecas, Ana Filipa Tavares da Silva, Andrew Anderson, Håkan Wikström, Melanie Dumarey, James Mann, Thomas De Beer (UGent) , Valérie Vanhoorne (UGent) , et al.

(2025) INTERNATIONAL JOURNAL OF PHARMACEUTICS. 675.

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Metagenomics-based tracing of genetically modified microorganism contaminations in commercial fermentation products

Jolien D’aes, Marie-Alice Fraiture, Bert Bogaerts, Yari Van Laere (UGent) , Sigrid C.J. De Keersmaecker, Nancy H.C. Roosens and Kevin Vanneste

(2025) FOOD CHEMISTRY: MOLECULAR SCIENCES. 10.

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Inherited retinal disease gene panel in posterior or panuveitis with dystrophic features

Stéphane Abramowicz (UGent) , Audrey Meunier, Dafina Draganova, Laure Caspers, Marieke De Bruyne (UGent) , Stijn Van de Sompele (UGent) , Elfride De Baere (UGent) , Bart Leroy (UGent) , Laurence Postelmans and François Willermain

(2025) RETINA-THE JOURNAL OF RETINAL AND VITREOUS DISEASES. 45(3). p.509-521

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Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel

Amrendra Kumar, Juliana da Fonseca Rezende e Mello, Yangyu Wu, Daniel Morris, Ikram Mezghani, Erin Smith, Stephane Rombauts (UGent) , Peter Bossier (UGent) , Juno Krahn, Fred J. Sigworth, et al.

(2025) CELL DEATH AND DIFFERENTIATION. p.1-18

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Salamandamide lipodipeptides are biosynthetic intermediate shunt products of the nonamodular nonribosomal peptide assembly lines of the viscosin family

Keshab Bhattarai, Thomas Majer, Manuela Haussmann, Dieter Schollmeyer, Markus Kramer, Feyisara Eyiwumi Oni (UGent) , Monica Höfte (UGent) , Rabea Voget, Michael Gutschow, Natalia Ruetalo, et al.

(2025) JOURNAL OF NATURAL PRODUCTS. 88(4). p.1012-1022