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- Journal Article
- A1
- open access
Determining tipping points and responses of macroinvertebrate traits to abiotic factors in support of river management
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Performance evaluation of RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study
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- Conference Paper
- C3
- open access
Dramatic impact of blood collection tube and RNA purification method on extracellular RNA transcriptomes
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- Journal Article
- A2
- open access
Exploring the microbiome analysis and visualization landscape
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- Journal Article
- A1
- open access
Towards building a quantitative proteomics toolbox in precision medicine : a mini-review
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Development of a 3':5' digital PCR assay to determine horse mRNA integrity
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- Journal Article
- A1
- open access
Sequence count data are poorly fit by the negative binomial distribution
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- Journal Article
- A1
- open access
A unified framework for unconstrained and constrained ordination of microbiome read count data
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- Miscellaneous
- open access
SPECS : a non-parameteric method to identify tissue-specific molecular features for unbalanced sample groups
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- Conference Paper
- C3
- open access
Probabilistic index models for testing differential gene expression in single-cell RNA sequencing data
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A broken promise : microbiome differential abundance methods do not control the false discovery rate
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Reducing bias in digital PCR quantification experiments : the importance of appropriate modelling of volume variability
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- Journal Article
- A1
- open access
A comprehensive overview of genomic imprinting in breast and its deregulation in cancer
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Reducing bias in digital PCR experiments by appropriate modelling of volume variability
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On determining the power of digital PCR experiments
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Confirmation of Mycoplasma hyopneumoniae in a breeding herd through tracheobronchial swab sampling and PCR
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- Journal Article
- A1
- open access
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data
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- Conference Paper
- C3
- open access
Differential gene expression analysis of RNA-sequencing data : evaluation of DGE tools for long non-coding RNA-sequencing data
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- Conference Paper
- C3
- open access
Probabilistic index models for testing differential gene expression in single-cell RNA-sequencing data
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Model-based analysis of the relationship between macroinvertebrate traits and environmental river conditions
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Quality control of digital PCR assays and platforms
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- Conference Paper
- C3
- open access
Nonparametric simulation to evaluate the performance of statistical methods for differential gene expression analysis of long non-coding RNA-seq data in cancer studies
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- Journal Article
- A1
- open access
BIGL : Biochemically Intuitive Generalized Loewe null model for prediction of the expected combined effect compatible with partial agonism and antagonism
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- Journal Article
- A1
- open access
A unified censored normal regression model for qPCR differential gene expression analysis
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Androgen receptor gene copy number detection using droplet digital PCR and its therapeutic consequences in prostate cancer patients
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Modeling cage effects in microbial community in Type 1 Diabetes (T1D) mouse model using mixed effect models
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Microbial invasion into drinking water-related bacterial communities
(2016) BIOSPEKTRUM. -
Microbial invasion into drinking water-related bacterial communities
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A web application for sample size and power calculation in case-control microbiome studies
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The future of digital polymerase chain reaction in virology
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- Journal Article
- A1
- open access
Mining for viral fragments in methylation enriched sequencing data
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Robust regression methods for real-time polymerase chain reaction
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GLMMs for nucleic acid concentration estimation in digital droplet PCR
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Extreme value theory for threshold determination in droplet digital PCR experiments
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Data analysis of droplet digital PCR with generalized linear mixed models
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VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering
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ddcRquant: threshold determination for single channel droplet digital PCR experiments
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- Journal Article
- A1
- open access
Comparison of the abiotic preferences of macroinvertebrates in tropical river basins
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Next-generation technologies and data analytical approaches for epigenomics
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The more, the merrier: heterotroph richness stimulates methanotrophic activity
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Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model
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Environmental conditions and community eveness determine the outcome of biological invasion
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Environmental conditions and community evenness determine the outcome of biological invasion
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Flow cytometry for fast microbial community fingerprinting
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Fast wavelet based functional models for transcriptome analysis with tiling arrays
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- Journal Article
- A1
- open access
Analysis of tiling array expression studies with flexible designs in Bioconductor (waveTiling)
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Specific butyrate-producing Clostridium cluster XIVa species colonize the mucosal environment of a novel in vitro gut model
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Specific Clostridium cluster XIVa species drive the mucosal butyrate production
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Flow cytometry for fast microbial community fingerprinting
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- Conference Paper
- C3
- open access
Flow cytometry community fingerprinting to detect quickly stress in drinking water systems
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MicroRNA expression in induced sputum of smokers and patients with chronic obstructive pulmonary disease
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A non-parametric method to assess the presence of significant DNA-methylation in enrichment-based NGS data
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A semiparametric unified approach for the detection of differential gene expression in microarrays
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Multiple putative oncogenes at the chromosome 20q amplicon contribute to colorectal adenoma to carcinoma progression
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Multi-method approach indicates no presence of sub-lethally injured Listeria monocytogenes cells after mild heat treatment
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Search for potential plant extracts in the prevention/treatment of dental caries in animals: GTF inhibition is a poor predictor of biofilm inhibition by plant extracts
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Interactions between κ-carrageenan, milk proteins and modified starch in sterilized dairy desserts
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Four-dimensional imaging and computer-assisted track analysis of nuclear migration in root hairs of Arabidopsis thaliana
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Interaction between Podisus maculiventris and Harmonia axyridis, two predators used in augmentative biological control in greenhouse crops
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Comparing telomere length of sister chromatids in human lymphocytes using three dimensional confocal microscopy