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Characterization of gene regulatory networks in plants using new methods and data types
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Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression
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IRF2 and TXNIP : two regulators of human NK cell development and function
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- Journal Article
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Evolution of wound-activated regeneration pathways in the plant kingdom
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Approaches and determinants to sustainably improve crop production
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Endoplasmic reticulum-bound ANAC013 factor is cleaved by RHOMBOID-LIKE 2 during the initial response to hypoxia in Arabidopsis thaliana
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The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice
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SAMBA controls cell division rate during maize development
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Reactive oxygen species signalling in plant stress responses
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GTF3A mutations predispose to herpes simplex encephalitis by disrupting biogenesis of the host-derived RIG-I ligand RNA5SP141
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The extended analogy of extraembryonic development in insects and amniotes
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IRF2 is required for development and functional maturation of human NK cells
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At the crossroads of survival and death : the reactive oxygen species-ethylene-sugar triad and the unfolded protein response
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T-BET and EOMES accelerate and enhance functional differentiation of human natural killer cells
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The Cymbidium genome reveals the evolution of unique morphological traits
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The Arabidopsis mediator complex subunit 8 regulates oxidative stress responses
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Comparative analysis of mouse and human preimplantation development following POU5F1 CRISPR/Cas9 targeting reveals interspecies differences
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Ribosome-targeting antibiotics impair T cell effector function and ameliorate autoimmunity by blocking mitochondrial protein synthesis
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The heat is on : how crop growth, development, and yield respond to high temperature
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Explainability in transformer models for functional genomics
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Evolution and function of the epithelial cell-specific ER stress sensor IRE1β
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Comparison of the PU.1 transcriptional regulome and interactome in human and mouse inflammatory dendritic cells
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Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and susceptibility to root-knot nematodes
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The involvement of the phytohormone ethylene in the adaptation of Arabidopsis rosettes to enhanced atmospheric carbon dioxide concentrations
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Myo-inositol transporter SLC5A3 associates with degenerative changes and inflammation in sporadic inclusion body myositis
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Using single‐plant‐omics in the field to link maize genes to functions and phenotypes
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Deep learning of immune cell differentiation
(2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(41). p.25655-25666 -
Vitamin C in plants : novel concepts, new perspectives, and outstanding issues
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Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation
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Transcription factor FTZ-F1 and cis-acting elements mediate expression of CYP6BG1 conferring resistance to chlorantraniliprole in Plutella xylostella
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Decrypting DC development
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Metabolic and innate immune cues merge into a specific inflammatory response via the UPR
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Jasmonate and auxin perception : how plants keep F-boxes in check
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From neural crest cells to melanocytes : cellular plasticity during development and beyond
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A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics
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Jasmonate-induced defense mechanisms in the belowground antagonistic interaction between Pythium arrhenomanes and Meloidogyne graminicola in rice
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Physiological expression of miR-130a during differentiation of CD34+ human hematopoietic stem cells results in the inhibition of monocyte differentiation
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The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels
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Induction of osmolyte pathways in skeletal muscle inflammation : novel biomarkers for myositis
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Redox-dependent control of nuclear transcription in plants
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Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells
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An ultraviolet B condition that affects growth and defense in Arabidopsis
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Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root
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The plant hormone ethylene restricts Arabidopsis growth via the epidermis
(2018) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 115(17). p.E4130-E4139 -
An engineered combinatorial module of transcription factors boosts production of monoterpenoid indole alkaloids in Catharanthus roseus
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Reactive oxygen species in plant development
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Fox proteins are modular competency factors for facial cartilage and tooth specification
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3'-Phosphoadenosine 5'-phosphate accumulation delays the circadian system
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Analysis of a novel mutant allele of GSL8 reveals its key roles in cytokinesis and symplastic trafficking in Arabidopsis
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Inflammation and NF-κB signaling in prostate cancer : mechanisms and clinical implications
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Localization and expression of nuclear factor of activated T-cells 5 in myoblasts exposed to pro-inflammatory cytokines or hyperosmolar stress and in biopsies from myositis patients
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Circuitry rewiring directly couples competence to predation in the gut dweller Streptococcus salivarius
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MorphDB : prioritizing genes for specialized metabolism pathways and gene ontology categories in plants
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DMRT5 together with DMRT3 directly controls hippocampus development and neocortical area map formation
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PPAR-γ promotes type 2 immune responses in allergy and nematode infection
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Emerging role of the unfolded protein response in tumor immunosurveillance
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Theoretical approaches to understanding root vascular patterning : a consensus between recent models
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Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem
(2017) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 114(42). p.E8922-E8929 -
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Lifespan extension in Caenorhabditis elegans insulin/IGF-1 signalling mutants is supported by non-vertebrate physiological traits
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A20 restrains thymic regulatory T cell development
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In vitro and ex vivo delivery of tailored siRNA-nanoliposomes for E2F1 silencing as a potential therapy for colorectal cancer
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A20 promotes metastasis of aggressive basal-like breast cancers through multi-monoubiquitylation of Snail1
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Plant nitrogen nutrition : sensing and signaling
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Inactivation of p120 catenin in mice disturbs intrahepatic bile duct development and aggravates liver carcinogenesis
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Portraying breast cancers with long noncoding RNAs
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The ubiquitin system and jasmonate signaling
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SCFSAP controls organ size by targeting PPD proteins for degradation in Arabidopsis thaliana
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GAME9 regulates the biosynthesis of steroidal alkaloids and upstream isoprenoids in the plant mevalonate pathway
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GATA1-deficient dendritic cells display impaired CCL21-dependent migration toward lymph nodes due to reduced levels of polysialic acid
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Cell type specificity of plant hormonal signals : case studies and reflections on ethylene
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Phenotype of a Belgian family with 6p25 deletion syndrome
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Plant vascular development: from early specification to differentiation
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Virion encapsidated HIV-1 Vpr induces NFAT to prime non-activated T cells for productive infection
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p120 Catenin-mediated stabilization of E-cadherin is essential for primitive endoderm specification
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Chromatin recruitment of activated AMPK drives fasting response genes co-controlled by GR and PPARα
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Activation of osmolyte pathways in inflammatory myopathy and Duchenne muscular dystrophy points to osmoregulation as a contributing pathogenic mechanism
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Transferring an optimized TAP-toolbox for the isolation of protein complexes to a portfolio of rice tissues
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Stage 4S neuroblastoma tumors show a characteristic DNA methylation portrait
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PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis
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Recurrent mutations in the basic domain of TWIST2 cause ablepharon macrostomia and Barber-Say syndromes
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A set of domain-specific markers in the Arabidopsis embryo
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A bHLH-based feedback loop restricts vascular cell proliferation in plants
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Redox strategies for crop improvement
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Sequence-selective DNA recognition and enhanced cellular up-take by peptide–steroid conjugates
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ERG expression in chondrogenic bone and soft tissue tumours: importance of antibody clone: comment on Shon et al (2015)
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PtaRHE1, a Populus tremula x Populus alba RING-H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development
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Two distinct nuclear localization signals in mammalian MSL1 regulate its function
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Intergenic sequence between Arabidopsis caseinolytic protease B-cytoplasmic/heat shock protein100 and choline kinase genes functions as a heat-inducible bidirectional promoter
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Prenatal plumbing-vascular tissue formation in the plant embryo
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Combining growth-promoting genes leads to positive epistasis in Arabidopsis thaliana
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Molecular regulation of the diatom cell cycle
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Integration of growth and patterning during vascular tissue formation in Arabidopsis
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Omics and modelling approaches for understanding regulation of asymmetric cell divisions in Arabidopsis and other angiosperm plants
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The emerging role of reactive oxygen species signaling during lateral root development
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Immunomodulatory effects of 17-O-acetylacuminolide in RAW264.7 cells and HUVECs : involvement of MAPK and NF-κB pathways
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Systemic suppression of the shoot metabolism upon rice root nematode infection
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Notch3 activation is sufficient but not required for inducing human T-lineage specification
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Accumulation of N-acetylglucosamine oligomers in the plant cell wall affects plant architecture in a dose-dependent and conditional manner
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The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana
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Epithelioid hemangioendothelioma: clinicopathologic, immunhistochemical, and molecular genetic analysis of 39 cases
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Fezf2 promotes neuronal differentiation through localised activation of Wnt/β-catenin signalling during forebrain development
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The ASH1-RELATED3 SET-domain protein controls cell division competence of the meristem and the quiescent center of the Arabidopsis primary root
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The Arabidopsis thaliana RNA Editing Factor SLO2, which affects the mitochondrial electron transport chain, participates in multiple stress and hormone responses
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Targeted degradation of abscisic acid receptors is mediated by the ubiquitin ligase substrate adaptor DDA1 in Arabidopsis
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MYB103 is required for FERULATE-5-HYDROXYLASE expression and syringyl lignin biosynthesis in Arabidopsis stems
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How glucocorticoid receptors modulate the activity of other transcription factors: a scope beyond tethering
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Modulation of neuroblastoma disease pathogenesis by an extensive network of epigenetically regulated microRNAs
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Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure
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Formative cell divisions: principal determinants of plant morphogenesis
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A map of cell type-specific auxin responses
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Post mortem function of AtMC9 in xylem vessel elements
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Identifying common structural DNA properties in transcription factor binding site sets of the LacI-GalR family
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ETHYLENE RESPONSE FACTOR6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis
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The paradox of the unfolded protein response in cancer
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A bHLH complex controls embryonic vascular tissue establishment and indeterminate growth in Arabidopsis
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The Arabidopsis embryo as a miniature morphogenesis model
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ERBB3 is a marker of a ganglioneuroblastoma/ganglioneuroma-like expression profile in neuroblastic tumours
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β-actin knock-out mouse embryonic fibroblasts show increased expression of LIM-, CH-, EFh-domain containing proteins with predicted common upstream regulators
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Tightly controlled WRKY23 expression mediates Arabidopsis embryo development
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An integrative model of the control of ovule primordia formation
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Insect nuclear receptors
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A subcellular localization compendium of hydrogen peroxide-induced proteins
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Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection
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Plakophilin-3 is required for late embryonic amphibian development, exhibiting roles in ectodermal and neural tissues
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A comparative study of seed yield parameters in Arabidopsis thaliana mutants and transgenics
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The "Sharp" blade against HIF-mediated metastasis
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A PP6-type phosphatase holoenzyme directly regulates PIN phosphorylation and auxin efflux in Arabidopsis
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Systematic identification of functional plant modules through the integration of complementary data sources
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Natural hypolignification is associated with extensive oligolignol accumulation in flax stems
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Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes
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Identification of putative cancer genes through data integration and comparative genomics between plants and humans
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Compound A, a dissociated glucocorticoid receptor modulator, inhibits T-bet (Th1) and induces GATA-3 (Th2) activity in immune cells
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New insights into the control of endoreduplication endoreduplication could be driven by organ growth in Arabidopsis leaves
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Light-dependent regulation of DEL1 is determined by the antagonistic action of E2Fb and E2Fc
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Auxin triggers a genetic switch
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Constitutive IKK2 activation in intestinal epithelial cells induces intestinal tumors in mice
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Hormone signalling crosstalk in plant growth regulation
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Asymmetric cell division in land plants and algae: the driving force for differentiation
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Sending mixed messages: auxin-cytokinin crosstalk in roots
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XAP5 circadian timekeeper regulates ethylene responses in aerial tissues of Arabidopsis
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A kaleidoscopic view of the Arabidopsis core cell cycle interactome
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Repetitive disruptions of the nuclear envelope invoke temporary loss of cellular compartmentalization in laminopathies
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Isolation of transcription factor complexes from Arabidopsis cell suspension cultures by tandem affinity purification
(2011) Plant transcription factors : methods and procotols. In Methods in Molecular Biology 754. p.195-218 -
Nitric oxide regulates pulmonary vascular smooth muscle cell expression of the inducible cAMP early repressor gene
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The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice
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Low magnesium status in plants enhances tolerance to cadmium exposure
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Reproductive cross-talk: seed development in flowering plants
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Bimodular auxin response controls organogenesis in Arabidopsis
(2010) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 107(6). p.2705-2710 -
A conditional mutation in Arabidopsis thaliana separase induces chromosome non-disjunction, aberrant morphogenesis and cyclin B1;1 stability
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Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress
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The GATA factor HANABA TARANU is required to position the proembryo boundary in the early Arabidopsis embryo
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Auxin control of root development
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A replication stress-induced synchronization method for Arabidopsis thaliana root meristems
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Effects of sod gene overexpression and deletion mutation on the expression profiles of reporter genes of major detoxification pathways in Caenorhabditis elegans
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The roots of a new green revolution
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Ectopic expression of E2F1 stimulates beta-Cell proliferation and function
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CDKB1;1 forms a functional complex with CYCA2;3 to suppress endocycle onset
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Overexpression of the Arabidopsis anaphase promoting complex subunit CDC27a increases growth rate and organ size
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Jasmonate-inducible gene: what does it mean?
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Eternal youth, the fate of developing Arabidopsis leaves upon Rhodococcus fascians infection
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Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis
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Atypical E2F activity restrains APC/C-CCS52A2 function obligatory for endocycle onset
(2008) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105(38). p.14721-14726 -
The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1
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Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint
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The ins and outs of the plant cell cycle
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A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
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Proteomics analysis of cytokine-induced dysfunction and death in insulin-producing INS-1E cells
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Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells
(2006) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(14). p.5614-5619 -
Cyclin-dependent kinase (CDK) inhibitors regulate the CDK-cyclin complex activities in endoreduplicating cells of developing tomato fruit
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What if higher plants lack a CDC25 phosphatase
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The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth
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The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis
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The DP-E2F-like gene DEL1 controls the endocycle in Arabidopsis thaliana
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Tuning the cell-cycle engine for improved plant performance
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Modular cloning in plant cells
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Hypoxia-indulcible factors 1α and 2α regulate trophoblast differentiation
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Mutations of VMD2 splicing regulators cause nanophthalmos and autosomal dominant vitreoretinochoroidopathy (ADVIRC)
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The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling
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A globin in the nucleus!
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Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteins
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Spectrum of FOXL2 gene mutations in blepharophimosis-ptosis-epicanthus inversus (BPES) families demonstrates a genotype-phenotype correlation
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The cathepsin B inhibitor z-FA.fmk inhibits cytokine production in macrophages stimulated by lipopolysaccharide
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Glutathione homeostasis in plants: implications for environmental sensing and plant development
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Sensitization of tumor cells to tumor necrosis factor action by the protein kinase inhibitor staurosporine
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TNF-mediated IL6 gene expression and cytotoxicity are co-inducible in TNF resistant L929 cells
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Tumor necrosis factor-induced interleukin-6 expression and cytotoxicity follow a common signal transduction pathway in L929 cells