Show
Sort by
-
- Journal Article
- A1
- open access
Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium
-
- Journal Article
- A1
- open access
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
-
- Journal Article
- A1
- open access
Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study
-
- Journal Article
- A2
- open access
Extracting functional insights from loss-of-function screens using deep link prediction
-
- Journal Article
- A1
- open access
Antibiotic cycling affects resistance evolution independently of collateral sensitivity
-
- Journal Article
- A1
- open access
Halvade somatic : somatic variant calling with Apache Spark
-
- Miscellaneous
- open access
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
(2022) -
- Journal Article
- A1
- open access
BLSSpeller to discover novel regulatory motifs in maize
-
Comparative transcriptome analysis of two maize genotypes with different tolerance to salt stress
-
OMEN : network-based driver gene identification using mutual exclusivity
-
- Journal Article
- A1
- open access
Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence
-
- Journal Article
- A1
- open access
First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin
-
- Journal Article
- A1
- open access
Dynamic partitioning of search patterns for approximate pattern matching using search schemes
-
- Journal Article
- A1
- open access
Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation
-
- Journal Article
- A1
- open access
Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019
-
- Journal Article
- A2
- open access
A shotgun metagenomics approach to detect and characterize unauthorized genetically modified microorganisms in microbial fermentation products
-
- Journal Article
- A1
- open access
Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations
-
- Conference Paper
- C3
- open access
Multifocality in prostate cancer : implications for PAM50 subtyping using an index lesion-only approach
-
- Journal Article
- A1
- open access
Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals
-
- Journal Article
- A1
- open access
A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches
-
- Journal Article
- A1
- open access
Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
-
- Journal Article
- A1
- open access
Network-based analysis to identify drivers of metastatic prostate cancer using GoNetic
-
- Journal Article
- A1
- open access
Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
-
Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks
-
- Journal Article
- A1
- open access
Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes
-
- Journal Article
- A1
- open access
Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods
-
DNA-SIP and repeated isolation corroborate Variovorax as a key organism in maintaining the genetic memory for linuron biodegradation in an agricultural soil
-
- Journal Article
- A1
- open access
Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants
-
A multiplex oligonucleotide ligation-PCR method for the genoserotyping of common Salmonella using a liquid bead suspension assay
-
- Journal Article
- A1
- open access
Pathway and network analysis of more than 2500 whole cancer genomes
-
- Journal Article
- A1
- open access
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
-
- Journal Article
- A1
- open access
Integrative pathway enrichment analysis of multivariate omics data
-
- Journal Article
- A1
- open access
Combined burden and functional impact tests for cancer driver discovery using DriverPower
-
- Journal Article
- A1
- open access
Image-based dynamic phenotyping reveals genetic determinants of filamentation-mediated beta-lactam tolerance
-
- Journal Article
- A1
- open access
First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015
-
- Journal Article
- A1
- open access
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
-
- Journal Article
- A1
- open access
Comparative analysis of somatic variant calling on matched FF and FFPE WGS samples
-
- Journal Article
- A1
- open access
Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination
-
- Journal Article
- A1
- open access
Pan-cancer analysis of whole genomes
-
- Journal Article
- A1
- open access
Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study
-
- Journal Article
- A1
- open access
A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine
-
- Journal Article
- A1
- open access
The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country
-
Culture-independent analysis of linuron-mineralizing microbiota and functions in on-farm biopurification systems via DNA-stable isotope probing : comparison with enrichment culture
-
- Journal Article
- A1
- open access
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium
-
- Journal Article
- A1
- open access
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
-
- Journal Article
- A1
- open access
Impact of DNA extraction on whole genome sequencing analysis for characterization and relatedness of Shiga toxin-producing Escherichia coli isolates
-
- Journal Article
- A1
- open access
Sex differences in oncogenic mutational processes
-
- Miscellaneous
- open access
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (vol 11, 4748, 2020)
-
- Journal Article
- A1
- open access
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
-
- Journal Article
- A1
- open access
IAMBEE : a web-service for the identification of adaptive pathways from parallel evolved clonal populations
-
- Journal Article
- A1
- open access
Organellar carbon metabolism is co-ordinated with distinct developmental phases of secondary xylem
-
Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java
-
- Journal Article
- A1
- open access
Associating expression and genomic data using co-occurrence measures
-
- Journal Article
- A1
- open access
Managing evidence in food safety and nutrition
-
- Journal Article
- A1
- open access
Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept
-
- Journal Article
- A1
- open access
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
-
- Journal Article
- A1
- open access
Molecular processes underlying synergistic linuron mineralization in a triple-species bacterial consortium biofilm revealed by differential transcriptomics
-
Modeling multi-valued biological interaction networks using fuzzy answer set programming
-
Catabolic task division between two near-isogenic subpopulations co-existing in a herbicide-degrading bacterial consortium : consequences for the interspecies consortium metabolic model
-
- Journal Article
- A1
- open access
1-((2,4-Dichlorophenethyl)amino)3-phenoxypropan-2-ol kills Pseudomonas aeruginosa through extensive membrane damage
-
- Journal Article
- A1
- open access
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-
-
- Journal Article
- A1
- open access
The Crabtree effect shapes the Saccharomyces cerevisiae lag phase during the switch between different carbon sources
-
Identification of novel genes involved in acetic acid tolerance of Saccharomyces cerevisiae using pooled-segregant RNA sequencing
-
Principles of systems biology, no. 14 : [...] Network analysis of woody biomass
-
Fermentation assays reveal differences in sugar and (off-) flavor metabolism across different Brettanomyces bruxellensis strains
-
Early differences in islets from prediabetic NOD mice : combined microarray and proteomic analysis
-
Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing
(2017) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 114(5). p.1195-1200 -
- Journal Article
- A1
- open access
Network-based identification of adaptive pathways in evolved ethanol-tolerant bacterial populations
-
Molecular subtyping of Salmonella Typhimurium with multiplex oligonucleotide ligation-PCR (MOL-PCR)
(2017) Diagnostic bacteriology : methods and protocols. In Methods in Molecular Biology 1616. p.39-69 -
- Journal Article
- A1
- open access
Effect of genomic distance on coexpression of coregulated genes in E. coli
-
- Journal Article
- A1
- open access
The evolutionary significance of polyploidy
-
- Journal Article
- A1
- open access
Network-based analysis of eQTL data to prioritize driver mutations
-
- Journal Article
- A1
- open access
FabR regulates Salmonella biofilm formation via its direct target FabB
-
- Journal Article
- A1
- open access
EXPLoRA-web: linkage analysis of quantitative trait loci using bulk segregant analysis
-
Adaptive self-organizing organisms using a bio-inspired gene regulatory network controller: for the aggregation of evolutionary robots under a changing environment
-
- Journal Article
- A1
- open access
Emergent adaptive behaviour of GRN-controlled simulated robots in a changing environment
-
- Journal Article
- A1
- open access
SSA-ME Detection of cancer driver genes using mutual exclusivity by small subnetwork analysis
-
Simultaneous discovery of cancer subtypes and subtype features by molecular data integration
-
Optimized MOL-PCR for characterization of microbial pathogens
-
- Journal Article
- A1
- open access
Elucidation of the mode of action of a new antibacterial compound active against Staphylococcus aureus and Pseudomonas aeruginosa
-
- Conference Paper
- C3
- open access
Pathway relevance ranking for tumor samples through network-based data integration (award for Outstanding Oral Poster Presentation )
-
- Journal Article
- A1
- open access
Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations
-
- Journal Article
- A1
- open access
Pathway relevance ranking for tumor samples through network-based data integration
-
Obg and membrane depolarization are part of a microbial bet-hedging strategy that leads to antibiotic tolerance
-
- Journal Article
- A1
- open access
Adaptation to high ethanol reveals complex evolutionary pathways
-
- Journal Article
- A1
- open access
PheNetic : network-based interpretation of molecular profiling data
-
- Journal Article
- A1
- open access
Guidelines for optimisation of a multiplex oligonucleotide ligation-PCR for characterisation of microbial pathogens in a microsphere suspension array
-
- Journal Article
- A1
- open access
Vitamin D3 induces tolerance in human dendritic cells by activation of intracellular metabolic pathways
-
Identifying prokaryotic consortia that live in close interactions with algae
-
Adaptation to high ethanol reveals complex evolutionary pathways
-
Studying the relationship between drug resistance and genomic variations in Leishmania donovani using a network-based method
-
- Journal Article
- A1
- open access
A multiplex oligonucleotide ligation-PCR as a complementary tool for subtyping of Salmonella Typhimurium
-
- Journal Article
- A1
- open access
SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering
-
- Journal Article
- A2
- open access
Whole genome sequence analysis of Salmonella Enteritidis PT4 outbreaks from a national reference laboratory’s viewpoint
-
Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains
-
Ultraviolet-B radiation stimulates downward leaf curling in Arabidopsis thaliana
-
The usefulness of whole genome sequencing for outbreak investigation of food pathogens, Salmonella Enteritidis as a case study
-
- Conference Paper
- C3
- open access
User‐friendly WGS analysis of Salmonella Enteritidis PT4 outbreaks
-
Path finding in biological networks
-
A putative de-N-acetylase of the PIG-L superfamily affects fluoroquinolone tolerance in Pseudomonas aeruginosa
-
Phenotypical and molecular responses of Arabidopsis thaliana roots as a result of inoculation with the auxin-producing bacterium Azospirillum brasilense
-
ASP-G: an ASP-based method for finding attractors in genetic regulatory networks
-
Assessing genetic diversity among Brettanomyces yeasts by DNA fingerprinting and whole-genome sequencing
-
Ranked tiling
-
Photoreceptor-mediated bending towards UV-B in Arabidopsis
-
- Journal Article
- A1
- open access
Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast
-
- Journal Article
- A1
- open access
Inferring the relation between transcriptional and posttranscriptional regulation from expression compendia
-
- Journal Article
- A1
- open access
COLOMBOS v2.0 : an ever expanding collection of bacterial expression compendia
-
- Journal Article
- A1
- open access
Genome-scale co-expression network comparison across escherichia coli and salmonella enterica serovar typhimurium reveals significant conservation at the regulon level of local regulators despite their dissimilar lifestyles
-
- Journal Article
- A1
- open access
Improving the adaptability of simulated evolutionary swarm robots in dynamically changing environments
-
MAGIC: access portal to a cross-platform gene expression compendium for maize
-
- Journal Article
- A1
- open access
A network-based approach to identify substrate classes of bacterial glycosyltransferases
-
Identifying differentially expressed genes in the absence of replication
-
EPSILON: an eQTL prioritization framework using similarity measures derived from local networks
-
- Journal Article
- A1
- open access
Synthetic biology and microdevices : a powerful combination
-
Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
-
Dynamics of the Saccharomyces cerevisiae transcriptome during bread dough fermentation
-
- Conference Paper
- C3
- open access
EPSILON: an eQTL prioritization framework using similarity measures derived from local networks
-
- Conference Paper
- C3
- open access
Identifying relevant pathways for different breast cancer subtypes using network based data integration
-
PheNetic: network-based interpretation of unstructured gene lists in E. coli
-
Omics derived networks in bacteria
-
Identifying common structural DNA properties in transcription factor binding site sets of the LacI-GalR family
-
- Conference Paper
- P1
- open access
An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference
-
Expression divergence between Escherichia coli and Salmonella enterica serovar Typhimurium reflects their lifestyles
-
- Journal Article
- A1
- open access
MLVA as a tool for public health surveillance of human Salmonella Typhimurium : prospective study in Belgium and evaluation of MLVA loci stability
-
Association of the vascular endothelial growth factor gene polymorphisms (-460C/T,+405G/C and+936T/C) with endometriosis: a meta-analysis
-
- Journal Article
- A1
- open access
Nucleosomes affect local transformation efficiency
-
Follicle stimulating hormone receptor G-29A, 919A > G, 2039A > G polymorphism and the risk of male infertility: A meta-analysis
-
Identification of a complex genetic network underlying Saccharomyces cerevisiae colony morphology
-
- Journal Article
- A2
- open access
DNA structural properties in the classification of genomic transcription
-
A combined approach to study the protein glycosylation potential of Lactobacillus rhamnosus GG (LGG)
-
Directed module detection in a large-scale expression compendium
(2012) Bacterial molecular networks : methods and protocols. In Methods in Molecular Biology 804. p.131-165 -
- Conference Paper
- P1
- open access
Mining local staircase patterns in noisy data
-
MotifSuite: workflow for probabilistic motif detection and assessment
-
- Journal Article
- A1
- open access
Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection
-
An ASP-based simulation method for finding all synchronous and asynchronous attractors in genetic regulatory networks
-
Predicting long term behavior of genetic regulatory networks with answer set programming
-
- Conference Paper
- C3
- open access
Exploring the complementarity of eQTL mapping methods (poster)
-
- Journal Article
- A1
- open access
COMODO : an adaptive coclustering strategy to identify conserved coexpression modules between organisms
-
A comparative transcriptome analysis of Rhizobium etli bacteroids: specific gene expression during symbiotic nongrowth
-
Network-based functional modeling of genomics, transcriptomics and metabolism in bacteria
-
- Journal Article
- A1
- open access
COLOMBOS : access port for cross-platform bacterial expression compendia
-
Genome sequence of Rhizobium etli CNPAF512, a nitrogen-fixing symbiont isolated from bean root nodules in Brazil
-
Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response
-
- Journal Article
- A1
- open access
Query-based biclustering of gene expression data using Probabilistic Relational Models
-
- Journal Article
- A1
- open access
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli
-
- Journal Article
- A1
- open access
An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference
-
- Journal Article
- A1
- open access
Stress response regulators identified through genome-wide transcriptome analysis of the (p) ppGpp-dependent response in Rhizobium etli
-
- Journal Article
- A1
- open access
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2
-
An ensemble biclustering approach for querying gene expression compendia with experimental lists
-
- Journal Article
- A1
- open access
The small regulatory RNA molecule MicA is involved in Salmonella enterica serovar Typhimurium biofilm formation
-
Integration of 'omics' data: does it lead to new insights into host-microbe interactions?
-
- Journal Article
- A1
- open access
The effect of orthology and coregulation on detecting regulatory motifs
-
The AI-2-dependent regulator LsrR has a limited regulon in Salmonella Typhimurium
-
Systems microbiology : gaining insights in transcriptional networks
-
- Conference Paper
- C1
- open access
Cis-regulatory module detection using constraint programming
-
An ensemble method for querying gene expression compendia with experimental lists
-
- Journal Article
- A1
- open access
The potential for pathogenicity was present in the ancestor of the Ascomycete subphylum Pezizomycotina
-
Regulation of cystathionine beta synthase by 1α,25-dihydroxyvitamin D₃
-
Regulation of semaphorin 3 family members and their receptors by 1α,25-dihydroxyvitamin D₃
-
Advantages and limitations of current network inference methods
-
Alternative experimental design with an applied normalization scheme can improve statistical power in 2D-DIGE experiments
-
- Journal Article
- A1
- open access
Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array
-
- Journal Article
- A1
- open access
Module network inference from a cancer gene expression data set identifies microRNA regulated modules
-
- Journal Article
- A1
- open access
DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli
-
The condition-dependent transcriptional network in Escherichia coli
-
- Journal Article
- A1
- open access
ModuleDigger: an itemset mining framework for the detection of cis-regulatory modules
-
ViTraM: visualization of transcriptional modules
-
A nonlinear mixed-effects model for estimating calibration intervals for unknown concentrations in two-color microarray data with spike-ins
-
Layout and post-processing of transcriptional modules
-
The use of mixed models to identify differentially expressed genes when a single replicate per biological condition is present
-
- Journal Article
- A1
- open access
Inferring the transcriptional network of Bacillus subtilis
-
Reverse-engineering transcriptional modules from gene expression data
-
Module networks revisited: computational assessment and prioritization of model predictions
-
- Journal Article
- A1
- open access
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
-
Microarray analysis of MCF-7 breast cancer cells treated with 1,25-dihydroxyvitamin D-3 or a 17-methyl-D-ring analog
-
Brominated furanones inhibit biofilm formation by Salmonella enterica serovar Typhimurium
-
- Miscellaneous
- open access
Bacterial networking
-
Genome-wide expression analysis reveals TORC1-dependent and -independent functions of Sch9
-
- Journal Article
- A1
- open access
Using ribosomal protein genes as reference : a tale of caution
-
Microarray analysis of MCF-7 breast cancer cells treated with 1,25-(OH)(2)D-3 or the analog WY1112
-
Expression of the BRCA1-interacting protein Brip1/BACH1/FANCJ is driven by E2F and correlates with human breast cancer malignancy
-
- Journal Article
- A1
- open access
Evaluation of time profile reconstruction from complex two-color microarray designs
-
Exploring the operational characteristics of inference algorithms for transcriptional networks by means of synthetic data
-
Meta analysis of gene expression data within and across species
-
Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation
-
Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis
-
Gene regulation bioinformatics of microarray data
-
- Conference Paper
- C1
- open access
GeneReg: integration of experimental data on the DNA transcription process
-
- Journal Article
- A1
- open access
Joint mapping of genes and conditions via multidimensional unfolding analysis
-
1α,25-Dihydroxyvitamin D₃-induced down-regulation of the checkpoint proteins, Chk1 and Claspin, is mediated by the pocket proteins p107 and p130
-
The E2F-regulated gene Chk1 is highly expressed in triple-negative estrogen receptor-/progesterone receptor-/HER-2-breast carcinomas
-
CALIB: a Bioconductor package for estimating absolute expression levels from two-color microarray data
-
Query-driven module discovery in microarray data
-
Combining omics data to unravel the regulatory network controlling Salmonella invasion of epithelial cells
-
- Journal Article
- A1
- open access
Validating module network learning algorithms using simulated data
-
Divergence of regulatory sequences in duplicated fish genes
-
- Journal Article
- A1
- open access
Inferring transcriptional modules from ChIP-chip, motif and microarray data
-
- Journal Article
- A1
- open access
More robust detection of motifs in coexpressed genes by using phylogenetic information
-
- Journal Article
- A1
- open access
SynTReN : a generator of synthetic gene expression data for design and analysis of structure learning algorithms
-
Integration of omics data: how well does it work for bacteria?
-
Strong antimicrobial activity of Lactobacillus rhamnosus GG against Salmonella typhimurium is due to accumulation of lactic acid
-
Predicting the clinical behavior of ovarian cancer from gene expression profiles
-
- Journal Article
- A1
- open access
The effect of a sertoli cell-selective knockout of the androgen receptor on testicular gene expression in prepubertal mice
-
A calibration method for estimating absolute expression levels from microarray data
-
Inferring transcriptional networks by mining 'omics' data
-
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium
-
M@CBETH: a microarray classification benchmarking tool
-
PKA and Sch9 control a molecular switch important for the proper adaptation to nutrient availability
-
Advances in cluster analysis of microarray data
-
Discovering transcriptional modules from motif, chip-chip and microarray data
-
M@CBETH: optimizing clinical microarray classification
-
- Conference Paper
- C1
- open access
Identifying new drug targets to combat pathogenic infections: an interdisciplinary approach
-
- Journal Article
- A1
- open access
A novel approach to identifying regulatory motifs in distantly related genomes
-
Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar Typhimurium HilA regulatory protein, including hilA itself
-
Chemical synthesis of (S)-4,5-dihydroxy-2,3-pentanedione, a bacterial signal molecule precursor, and validation of its activity in Salmonella Typhimurium
-
Characterization of the condensin component Cnap1 and protein kinase Melk as novel E2F target genes down-regulated by 1,25-dihydroxyvitamin D3
-
- Journal Article
- A1
- open access
In silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detection
-
Computational biology and toxicogenomics
-
Differential regulation of the insulin-like growth factor II mRNA-binding protein genes by architectural transcription factor HMGA2
-
Peptide signal molecules and bacteriocins in Gram-negative bacteria: a genome-wide in silico screening for peptides containing a double-glycine leader sequence and their cognate transporters
-
Screening genomes of Gram-positive bacteria for double-glycine-motif-containing peptides
-
The effects of 1α,25-dihydroxyvitamin D₃ on the expression of DNA replication genes
-
Annotation of the pRhico plasmid of Azospirillum brasilense reveals its role in determining the outer surface composition
-
Genetic and physical map of the pLAFR1 vector
-
Bioinformatics: organisms from Venus, technology from Jupiter, algorithms from Mars
-
Computational approaches to identify promoters and cis-regulatory elements in plant genomes
-
- Journal Article
- A1
- open access
INCLUSive : a web portal and service registry for microarray and regulatory sequence analysis
-
MARAN: normalizing micro-array data
-
Genome-specific higher-order background models to improve motif detection
-
Sensitivity function-based model reduction: a bacterial gene expression case study
-
Comparison of different methodologies to identify differentially expressed genes in two-sample cDNA microarrays
-
Functional bioinformatics of microarray data: from expression to regulation
-
- Conference Paper
- C1
- open access
Integrating quality-based clustering of microarray data with Gibbs sampling for the discovery of regulatory motifs
-
Adaptive quality-based clustering of gene expression profiles
-
- Journal Article
- A1
- open access
Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales
-
- Journal Article
- A1
- open access
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
-
- Journal Article
- A1
- open access
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
-
INCLUSive: INtegrated Clustering, Upstream of sequence retrieval and motif Sampling
-
The PlantCARE database and tools for in silico search of plant cis-acting regulatory elements
-
Quantitative analysis of bacterial gene expression by using the gusA reporter gene system
-
A Gibbs sampling method to detect over-represented motifs in upstream regions of co-expressed genes
-
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
-
In silico search of plant cis-acting regulatory elements
-
Characterization of an Azospirillum brasilense Tn5 mutant with enhanced N₂ fixation: the effect of ORF280 on nifH expression
-
The 'oxygen paradox' of dinitrogen-fixing bacteria
-
The cytochrome cbb3 (cytochrome C) terminal oxidase of A. brasilense Sp7
-
Detection of cis-acting regulatory elements in plants : a GIBBS sampling approach
-
A cytochrome cbb3 (cytochrome c) terminal oxidase in Azospirillum brasilense Sp7 supports microaerobic growth
-
Evidence for a cbb 3-type cytochrome C terminal oxidase in Azospirillum brasilense Sp7