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- Journal Article
- A1
- open access
The gene regulation knowledge commons : the action area of GREEKC
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- Journal Article
- A1
- open access
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
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Using the relation ontology Metarel for modelling Linked Data as multi-digraphs
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- Journal Article
- A1
- open access
Gauging triple stores with actual biological data
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Reasoning with bio-ontologies: using relational closure rules to enable practical querying
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Flexibility and utility of the Cell Cycle Ontology
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- Journal Article
- A1
- open access
Specific impact of Tobamovirus infection on the arabidopsis small RNA profile
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- Conference Paper
- C1
- open access
Validating clusterings of gene expression data
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Clustering of gene expression profiles: creating initialization-independent clusterings by eliminating unstable genes
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- Journal Article
- A1
- open access
DASS-GUI : a user interface for identification and analysis of significant patterns in non-sequential data
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- Journal Article
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- open access
Flexible network reconstruction from relational databases with Cytoscape and CytoSQL
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Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana
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Biological knowledge management: the emerging role of the Semantic Web technologies
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Initialization dependence of clustering algorithms
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- Journal Article
- A1
- open access
BioGateway: a semantic systems biology tool for the life sciences
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- Journal Article
- A1
- open access
The cell cycle ontology: an application ontology for the representation and integrated analysis of the cell cycle process
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Gene expression trends and protein features effectively complement each other in gene function prediction
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Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes
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- Journal Article
- A1
- open access
Extracting expression modules from perturbational gene expression compendia
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- Journal Article
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Ontology design patterns for bio-ontologies: a case study on the cell cycle ontology
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ONTO-PERL: an API for supporting the development and analysis of bio-ontologies
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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
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- Journal Article
- A1
- open access
Validating module network learning algorithms using simulated data
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- Journal Article
- A1
- open access
CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes
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Integration of biological networks and gene expression data using Cytoscape
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A cell-cycle knowledge integration framework
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Genetic dissection of transcriptional regulation by cDNA-AFLP
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The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth
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- Journal Article
- A1
- open access
Genome-wide screening for cis-regulatory variation using a classical diallel crossing scheme
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Simulating genetic networks made easy: network construction with simple building blocks
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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
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Genetic analysis of variation in gene expression in Arabidopsis thaliana
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Modeling gene and genome duplications in eukaryotes
(2005) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 102(15). p.5454-5459 -
- Journal Article
- A1
- open access
The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes
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- Journal Article
- A1
- open access
Benchmarking the CATMA microarray : a novel tool for Arabidopsis transcriptome analysis
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- Journal Article
- A1
- open access
Versatile gene-specific sequence tags for Arabidopsis functional genomics : trancript profiling and reverse genetics applications
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European consortia building integrated resources for Arabidopsis functional genomics
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Two high-density AFLP® linkage maps of Zea mays L.: analysis of distribution of AFLP markers