Ghent University Academic Bibliography

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Your filters: cql: author="Herzeel, Charlotte" or (type exact bookEditor and editor="Herzeel, Charlotte")

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Halvade somatic : somatic variant calling with Apache Spark

Dries Decap (UGent) , Louise de Schaetzen van Brienen (UGent) , Maarten Larmuseau (UGent) , Pascal Costanza, Charlotte Herzeel, Roel Wuyts, Kathleen Marchal (UGent) and Jan Fostier (UGent)

(2022) GIGASCIENCE. 11.
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Multithreaded variant calling in elPrep 5

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) , Roel Wuyts and Wilfried Verachtert

(2021) PLOS ONE. 16(2).
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elPrep 4 : a multithreaded framework for sequence analysis

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Wilfried Verachtert

(2019) PLOS ONE. 14(2). p.1-16
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Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2017) PLOS ONE. 12(3).
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Performance analysis of a parallel, multi-node pipeline for DNA sequencing

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2016) PARALLEL PROCESSING AND APPLIED MATHEMATICS, PPAM 2015, PT II. In Lecture Notes in Computer Science 9574. p.233-242
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Halvade: scalable sequence analysis with MapReduce

Dries Decap (UGent) , Joke Reumers, Charlotte Herzeel, Pascal Costanza and Jan Fostier (UGent)

(2015) BIOINFORMATICS. 31(15). p.2482-2488
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elPrep: high-performance preparation of sequence alignment/map files for variant calling

Charlotte Herzeel, Pascal Costanza, Dries Decap (UGent) , Jan Fostier (UGent) and Joke Reumers

(2015) PLOS ONE. 10(7).
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Fact spaces : coordination in the face of disconnection

Stijn Mostinckx, Christophe Scholliers (UGent) , Eline Philips, Charlotte Herzeel and Wolfgang De Meuter

(2007) Lecture Notes in Computer Science. 4467. p.268-285

Academic Bibliography

Halvade somatic : somatic variant calling with Apache Spark

Multithreaded variant calling in elPrep 5

elPrep 4 : a multithreaded framework for sequence analysis

Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce

Performance analysis of a parallel, multi-node pipeline for DNA sequencing

Halvade: scalable sequence analysis with MapReduce

elPrep: high-performance preparation of sequence alignment/map files for variant calling

Fact spaces : coordination in the face of disconnection

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