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Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
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- Journal Article
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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
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- Journal Article
- A1
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RNA viruses alter house dust mite physiology and allergen production with no detected consequences for allergenicity
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- Journal Article
- A1
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Industrial chicory genome gives insights into the molecular timetable of anther development and male sterility
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- Journal Article
- A1
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Identification and characterization of CYP71 subclade cytochrome P450 enzymes involved in the biosynthesis of bitterness compounds in Cichorium intybus
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- Journal Article
- A1
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Suppression of the Arabidopsis cinnamoyl-CoA reductase 1-6 intronic T-DNA mutation by epigenetic modification
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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
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- Journal Article
- A1
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The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales
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- Journal Article
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'Nebbiolo' genome assembly allows surveying the occurrence and functional implications of genomic structural variations in grapevines (Vitis vinifera L.).
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Genomic evidence that a sexually selected trait captures genome-wide variation and facilitates the purging of genetic load
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- Journal Article
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Flemish soils contain rhizobia partners for Northwestern Europe‐adapted soybean cultivars
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- Journal Article
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Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
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- Journal Article
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The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago
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De novo whole-genome assembly and discovery of genes involved in triterpenoid saponin biosynthesis of Vietnamese ginseng (Panax vietnamensis Ha et Grushv.)
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- Journal Article
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RNA viruses in the house dust mite Dermatophagoides pteronyssinus, detection in environmental samples and in commercial allergen extracts used for in vivo diagnosis
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- Journal Article
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Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle
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- Journal Article
- A1
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The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments
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- Journal Article
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Genome streamlining in a minute herbivore that manipulates its host plant
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- Journal Article
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Virus-host coexistence in phytoplankton through the genomic lens
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- Miscellaneous
- open access
A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression
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- Journal Article
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A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- and stage-specific patterns of allergen expression
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- Journal Article
- A2
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Draft genome assembly of the false spider mite Brevipalpus yothersi
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Identification of salt stress response genes using the Artemia transcriptome
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The 'TranSeq' 3'-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes
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- Journal Article
- A1
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Genome analyses of the microalga Picochlorum provide insights into the evolution of thermotolerance in the green lineage
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The Chara genome : secondary complexity and implications for plant terrestrialization
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- Journal Article
- A2
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Draft genome assembly of the sheep scab mite, Psoroptes ovis
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- Journal Article
- A2
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Draft genome assembly of the poultry red mite, Dermanyssus gallinae
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- Journal Article
- A2
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Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples
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- Journal Article
- A2
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Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples
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- Journal Article
- A2
- open access
Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples
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- Journal Article
- A2
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A new version of the grapevine reference genome assembly (12X.v2) and of its annotation (VCost.v3)
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- Journal Article
- A1
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OMSim : a simulator for optical map data
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Dietary shifts have consequences for the repertoire of allergens produced by the European house dust mite
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- Journal Article
- A1
- open access
Jabba: hybrid error correction for long sequencing reads
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- Journal Article
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Complex evolutionary dynamics of massively expanded chemosensory receptor families in an extreme generalist chelicerate herbivore
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Identifying prokaryotic consortia that live in close interactions with algae
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- Journal Article
- A1
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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- Journal Article
- A1
- open access
The grapevine gene nomenclature system
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Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics
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A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae
(2013) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 110(2). p.E113-E122 -
Analysis of RNA-Seq data with TopHat and Cufflinks for genome-wide expression analysis of jasmonate-treated plants and plant cell cultures
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- Journal Article
- A1
- open access
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
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CathaCyc, a metabolic pathway database built from Catharanthus roseus RNA-Seq data
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The tomato genome sequence provides insights into fleshy fruit evolution
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- Journal Article
- A1
- open access
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
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In silico cloning of genes encoding neuropeptides, neurohormones and their putative G-protein coupled receptors in a spider mite
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The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner-Doudoroff glycolytic pathway
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The Medicago genome provides insight into the evolution of rhizobial symbioses
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The genome of Tetranychus urticae reveals herbivorous pest adaptations
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CLE peptides control Medicago truncatula nodulation locally and systemically
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AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling
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Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes
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- Journal Article
- A1
- open access
Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network
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- Journal Article
- A1
- open access
Seven in absentia proteins affect plant growth and nodulation in Medicago truncatula
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The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants
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Genome annotation in plants and fungi: EuGène as a model platform
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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
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- Journal Article
- A1
- open access
Comparative transcriptome analysis reveals common and specific tags for root hair and crack-entry invasion in Sesbania rostrata
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- Journal Article
- A1
- open access
A symbiotic plant peroxidase involved in bacterial invasion of the tropical legume Sesbania rostrata
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How many genes are there in plants (... and why are they there)?
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The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
(2007) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 104(18). p.7705-7710 -
The annotation and analysis of the genome of Arabidopsis lyrata
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A molecular timetable for apical bud formation and dormancy induction in poplar
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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
(2006) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(31). p.11647-11652 -
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
(2006) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 103(40). p.14959-14964 -
- Journal Article
- A1
- open access
Aging in legume symbiosis : a molecular view on nodule senescence in Medicago truncatula
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The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
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- Journal Article
- A1
- open access
Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis
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Genome analysis of the world's smallest free-living eukaryote Ostreococcus tauri unveils unique genome heterogeneity
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- Journal Article
- A1
- open access
GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
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EST data suggest that poplar is an ancient polyploid
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Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements
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Starch division and partitioning: a mechanism for granule propagation and maintenance in the picophytoplanktonic green alga Ostreococcus tauri
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Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana
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Computational approaches to identify promoters and cis-regulatory elements in plant genomes
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AFLPinSilico, simulating AFLP fingerprints
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Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants
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Quantitative cDNA-AFLP analysis for genome-wide expression studies
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Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation
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- Journal Article
- A1
- open access
Genome-wide analysis of core cell cycle genes in Arabidopsis
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- Conference Paper
- C1
- open access
Integrating quality-based clustering of microarray data with Gibbs sampling for the discovery of regulatory motifs
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Deciphering cis-acting regulatory elements in plant and drosophila promoter sequences
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The PlantCARE database and tools for in silico search of plant cis-acting regulatory elements
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Transcriptome analysis during cell division in plants
(2002) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 99(23). p.14825-14830 -
Moss transcriptome and beyond
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- Journal Article
- A1
- open access
A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes
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INCLUSive: INtegrated Clustering, Upstream of sequence retrieval and motif Sampling
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- Journal Article
- A1
- open access
PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences
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A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
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Identification of novel cyclin-dependent kinases interacting with the CKS1 protein of Arabidopsis
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In silico search of plant cis-acting regulatory elements
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Characterization of two distinct DP-related genes from Arabidopsis thaliana
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Gene prediction and gene classes in Arabidopsis thaliana
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Recognition of gene regulatory sequences by bagging of neural networks
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Génomique et bio-informatique
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- Journal Article
- A1
- open access
PlantCARE, a plant cis-acting regulatory element database
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Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4
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Evaluation of gene prediction software using a genomic data set: application to Arabidopsis thaliana sequences
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Genome annotation: which tools do we have for it?
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Gene prediction in Arabidopsis thaliana: genomic sequences