Ghent University Academic Bibliography

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Ten simple rules for Global North researchers to stop perpetuating helicopter research in the Global South

Danny Haelewaters (UGent) , Tina A. Hofmann and Adriana L. Romero-Olivares

(2021) PLoS Computational Biology. 17(8).
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Radio-frequency exposure of the yellow fever mosquito (A. aegypti) from 2 to 240 GHz

Eline De Borre (UGent) , Wout Joseph (UGent) , Reza Aminzadeh, Pie Mueller, Matthieu Boone (UGent) , Iván Josipovic (UGent) , Sina Hashemizadeh, Niels Kuster, Sven Kuehn and Arno Thielens (UGent)

(2021) PLOS COMPUTATIONAL BIOLOGY. 17(10).
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Calibration of individual-based models to epidemiological data : a systematic review

C. Marijn Hazelbag, Jonathan Dushoff, Emanuel M. Dominic, Zinhle E. Mthombothi, Wim Delva (UGent) , Roger Dimitri Kouyos and Virginia E. Pitzer

(2020) PLOS COMPUTATIONAL BIOLOGY. 16(5).
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Learning to synchronize : how biological agents can couple neural task modules for dealing with the stability-plasticity dilemma

Pieter Verbeke (UGent) and Tom Verguts (UGent)

(2019) PLOS COMPUTATIONAL BIOLOGY. 15(8).
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A machine learning based framework to identify and classify long terminal repeat retrotransposons

Leander Schietgat, Celine Vens, Ricardo Cerri, Carlos N Fischer, Eduardo Costa, Jan Ramon, Claudia MA Carareto and Hendrik Blockeel

(2018) PLOS COMPUTATIONAL BIOLOGY. 14(4).
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Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern

Nele Vandersickel (UGent) , Masaya Watanabe, Qian Tao, Jan Fostier (UGent) , Katja Zeppenfeld and Alexander Panfilov (UGent)

(2018) PLOS COMPUTATIONAL BIOLOGY. 14(12).
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Dorsal anterior cingulate-brainstem ensemble as a reinforcement meta-learner

Massimo Silvetti (UGent) , Eliana Vassena (UGent) , Elger Abrahamse (UGent) and Tom Verguts (UGent)

(2018) PLOS COMPUTATIONAL BIOLOGY. 14(8).
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Exploring of the feature space of de novo developed post-transcriptional riboregulators

Gert Peters (UGent) , Jo Maertens (UGent) , Jeroen Lammertyn and Marjan De Mey (UGent)

(2018) PLOS COMPUTATIONAL BIOLOGY. 14(8).
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A mathematical model of neonatal rat atrial monolayers with constitutively active acetylcholine-mediated K+ current

Rupamanjari Majumder, Wanchana Jangsangthong, Iolanda Feola, Dirk L Ypey, Daniel A Pijnappels and Alexander Panfilov (UGent)

(2016) PLOS COMPUTATIONAL BIOLOGY. 12(6).
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FireProt : energy- and evolution-based computational design of thermostable multiple-point mutants

David Bednar, Koen Beerens (UGent) , Eva Sebestova, Jaroslav Bendl, Sagar Khare, Radka Chaloupkova, Zbynek Prokop, Jan Brezovsky, David Baker and Jiri Damborsky

(2015) PLOS COMPUTATIONAL BIOLOGY. 11(11).
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Active learning to understand infectious disease models and improve policy making

Lander Willem, Sean Stijven (UGent) , Ekaterina Vladislavleva, Jan Broeckhove, Philippe Beutels and Niel Hens

(2014) PLOS COMPUTATIONAL BIOLOGY. 10(4).
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Effect of global cardiac ischemia on human ventricular fibrillation : insights from a multi-scale mechanistic model of the human heart

Ivan Kazbanov (UGent) , Richard H Clayton, Martyn P Nash, Chris P Bradley, David J Paterson, Martin P Hayward, Peter Taggart and Alexander Panfilov (UGent)

(2014) PLOS COMPUTATIONAL BIOLOGY. 10(11).
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Bursts of vertex activation and epidemics in evolving networks

Luis E C Rocha (UGent) and Vincent D. Blondel

(2013) PLOS COMPUTATIONAL BIOLOGY. 9(3).
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About dice, bouldering, and team empowerment: running the CompOmics group at VIB and Ghent University, Belgium

Lennart Martens (UGent)

(2013) PLOS COMPUTATIONAL BIOLOGY. 9(11).
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Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts

Luis E C Rocha (UGent) , Fredrik Liljeros and Petter Holme

(2011) PLOS COMPUTATIONAL BIOLOGY. 7(3).
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Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth

Roeland Merks (UGent) , Erica D Perryn, Abbas Shirinifard and James A Glazier

(2008) PLOS COMPUTATIONAL BIOLOGY. 4(9).

Academic Bibliography

Ten simple rules for Global North researchers to stop perpetuating helicopter research in the Global South

Radio-frequency exposure of the yellow fever mosquito (A. aegypti) from 2 to 240 GHz

Calibration of individual-based models to epidemiological data : a systematic review

Learning to synchronize : how biological agents can couple neural task modules for dealing with the stability-plasticity dilemma

A machine learning based framework to identify and classify long terminal repeat retrotransposons

Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern

Dorsal anterior cingulate-brainstem ensemble as a reinforcement meta-learner

Exploring of the feature space of de novo developed post-transcriptional riboregulators

A mathematical model of neonatal rat atrial monolayers with constitutively active acetylcholine-mediated K+ current

FireProt : energy- and evolution-based computational design of thermostable multiple-point mutants

Active learning to understand infectious disease models and improve policy making

Effect of global cardiac ischemia on human ventricular fibrillation : insights from a multi-scale mechanistic model of the human heart

Bursts of vertex activation and epidemics in evolving networks

About dice, bouldering, and team empowerment: running the CompOmics group at VIB and Ghent University, Belgium

Simulated epidemics in an empirical spatiotemporal network of 50,185 sexual contacts

Contact-inhibited chemotaxis in de novo and sprouting blood-vessel growth

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