Ghent University Academic Bibliography

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Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

Annelies Bogaert (UGent) , Daria Fijalkowska (UGent) , An Staes (UGent) , Tessa Van de Steene (UGent) , Hans Demol (UGent) and Kris Gevaert (UGent)

(2022) MOLECULAR & CELLULAR PROTEOMICS. 21(8).
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The cellular response to plasma membrane disruption for nanomaterial delivery

Gaëlle Houthaeve (UGent) , Stefaan De Smedt (UGent) , Kevin Braeckmans (UGent) and Winnok H. De Vos

(2022) NANO CONVERGENCE. 9(1).
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Homogeneously N-glycosylated proteins derived from the GlycoDelete HEK293 cell line enable diffraction-quality crystallogenesis

Sandra Kozak, Yehudi Bloch (UGent) , Steven De Munck, Aleksandra Mikula, Isabel Bento, Savvas Savvides (UGent) and Rob Meijers

(2020) ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY. 76. p.1244-1255
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Cx43 channels and signaling via IP3/Ca2+, ATP, and ROS/NO propagate radiation-induced DNA damage to non-irradiated brain microvascular endothelial cells

Delphine Hoorelbeke (UGent) , Elke Decrock (UGent) , Maarten De Smet (UGent) , Marijke De Bock (UGent) , Benedicte Descamps (UGent) , Valérie Van Haver, Tinneke Delvaeye (UGent) , Dmitri Krysko (UGent) , Christian Vanhove (UGent) , Geert Bultynck, et al.

(2020) CELL DEATH & DISEASE. 11(3).
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An inside job : applications of intracellular single domain antibodies

Eline Soetens (UGent) , Marlies Ballegeer (UGent) and Xavier Saelens (UGent)

(2020) BIOMOLECULES. 10(12).
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Validated comprehensive metabolomics and lipidomics analysis of colon tissue and cell lines

Caroline Rombouts, Margot De Spiegeleer (UGent) , Lieven Van Meulebroek (UGent) , Winnok De Vos (UGent) and Lynn Vanhaecke (UGent)

(2019) ANALYTICA CHIMICA ACTA. 1066. p.79-92
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Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Koen Van den Berge (UGent) , Fanny Perraudeau, Charlotte Soneson, Michael I Love, Davide Risso, Jean-Philippe Vert, Mark D Robinson, Sandrine Dudoit and Lieven Clement (UGent)

(2018) GENOME BIOLOGY. 19.
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Structural activation of pro-inflammatory human cytokine IL-23 by cognate IL-23 receptor enables recruitment of the shared receptor IL-12Rβ1

Yehudi Bloch (UGent) , Laura Bouchareychas, Romain Merceron (UGent) , Katarzyna Skladanowska (UGent) , Lien Van den Bossche (UGent) , Sammy Detry (UGent) , Srinath Govindarajan (UGent) , Dirk Elewaut (UGent) , Filomeen Haerynck (UGent) , Melissa Dullaers (UGent) , et al.

(2018) IMMUNITY. 48(1). p.45-58
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Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Chan Hyun Na, Mustafa Barbhuiya, Min-Sik Kim, Steven Verbruggen (UGent) , Stephen Eacker, Olga Pletnikova, Juan Troncoso, Marc Halushka, Gerben Menschaert (UGent) , Christopher Overall, et al.

(2018) GENOME RESEARCH. 28(1). p.25-36
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Imaging of oxygen and hypoxia in cell and tissue samples

Dmitri B. Papkovsky and Ruslan Dmitriev (UGent)

(2018) CELLULAR AND MOLECULAR LIFE SCIENCES. 75(16). p.2963-2980
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Repeated photoporation with graphene quantum dots enables homogeneous labeling of live cells with extrinsic markers for fluorescence microscopy

Jing Liu, Ranhua Xiong (UGent) , Toon Brans (UGent) , Saskia Lippens (UGent) , Eef Parthoens (UGent) , Francesca Cella Zanacchi, Raffaella Magrassi, Santosh K Singh, Sreekumar Kurungot, Sabine Szunerits, et al.

(2018) LIGHT-SCIENCE & APPLICATIONS. 7.
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Structure and antagonism of the receptor complex mediated by human TSLP in allergy and asthma

Kenneth Verstraete (UGent) , Frank Peelman (UGent) , Harald Braun (UGent) , Juan Lopez, Dries Van Rompaey, Ann Dansercoer (UGent) , Isabel Vandenberghe (UGent) , Kris Pauwels, Jan Tavernier (UGent) , Bart Lambrecht (UGent) , et al.

(2017) NATURE COMMUNICATIONS. 8.
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Nanobody technology : a versatile toolkit for microscopic imaging, protein-protein interaction analysis, and protein function exploration

Els Beghein and Jan Gettemans (UGent)

(2017) FRONTIERS IN IMMUNOLOGY. 8.
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Regulated IRE1-dependent mRNA decay sets the threshold for dendritic cell survival

Simon Tavernier (UGent) , Fabiola Osorio (UGent) , Lana Vandersarren, Jessica Vetters (UGent) , Nele Vanlangenakker (UGent) , Gert Van Isterdael (UGent) , Karl Vergote (UGent) , Riet De Rycke (UGent) , Eef Parthoens (UGent) , Lianne van de Laar (UGent) , et al.

(2017) NATURE CELL BIOLOGY. 19(6). p.698-710
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Oral delivery of Escherichia coli persistently infected with M2e-displaying bacteriophages partially protects against influenza A virus

Lei Deng (UGent) , Kenny Roose (UGent) , Emma Job (UGent) , Riet De Rycke (UGent) , Evelien Van Hamme (UGent) , Amanda Gonçalves (UGent) , Eef Parthoens (UGent) , Laetitia Cicchelero (UGent) , Niek Sanders (UGent) , Walter Fiers, et al.

(2017) JOURNAL OF CONTROLLED RELEASE. 264. p.55-65
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Conservation of nonsense-mediated mRNA decay complex components throughout eukaryotic evolution

Barry Causier, Zhen Li (UGent) , Riet De Smet (UGent) , James PB Lloyd, Yves Van de Peer (UGent) and Brendan Davies

(2017) SCIENTIFIC REPORTS. 7.
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Cross-linking furan-modified kisspeptin-10 to the KISS receptor

Willem Vannecke (UGent) , Christophe Ampe (UGent) , Marleen Van Troys (UGent) , Massimiliano Beltramo and Annemieke Madder (UGent)

(2017) ACS CHEMICAL BIOLOGY. 12(8). p.2191-2200
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Ribosome signatures aid bacterial translation initiation site identification

Adam Giess, Veronique Jonckheere (UGent) , Elvis Ndah (UGent) , Katarzyna Chyżyńska, Petra Van Damme (UGent) and Eivind Valen

(2017) BMC BIOLOGY. 15.
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eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs

Daria Fijalkowska (UGent) , Steven Verbruggen (UGent) , Elvis Ndah (UGent) , Veronique Jonckheere (UGent) , Gerben Menschaert (UGent) and Petra Van Damme (UGent)

(2017) NUCLEIC ACIDS RESEARCH. 45(13). p.7997-8013
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Israeli acute paralysis virus infection leads to an enhanced RNA interference response and not its suppression in the bumblebee Bombus terrestris

Kaat Cappelle (UGent) , Guy Smagghe (UGent) , Maarten Dhaenens (UGent) and Ivan Meeus (UGent)

(2016) VIRUSES-BASEL. 8(12).

Academic Bibliography

Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol

The cellular response to plasma membrane disruption for nanomaterial delivery

Homogeneously N-glycosylated proteins derived from the GlycoDelete HEK293 cell line enable diffraction-quality crystallogenesis

Cx43 channels and signaling via IP3/Ca2+, ATP, and ROS/NO propagate radiation-induced DNA damage to non-irradiated brain microvascular endothelial cells

An inside job : applications of intracellular single domain antibodies

Validated comprehensive metabolomics and lipidomics analysis of colon tissue and cell lines

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

Structural activation of pro-inflammatory human cytokine IL-23 by cognate IL-23 receptor enables recruitment of the shared receptor IL-12Rβ1

Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini

Imaging of oxygen and hypoxia in cell and tissue samples

Repeated photoporation with graphene quantum dots enables homogeneous labeling of live cells with extrinsic markers for fluorescence microscopy

Structure and antagonism of the receptor complex mediated by human TSLP in allergy and asthma

Nanobody technology : a versatile toolkit for microscopic imaging, protein-protein interaction analysis, and protein function exploration

Regulated IRE1-dependent mRNA decay sets the threshold for dendritic cell survival

Oral delivery of Escherichia coli persistently infected with M2e-displaying bacteriophages partially protects against influenza A virus

Conservation of nonsense-mediated mRNA decay complex components throughout eukaryotic evolution

Cross-linking furan-modified kisspeptin-10 to the KISS receptor

Ribosome signatures aid bacterial translation initiation site identification

eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs

Israeli acute paralysis virus infection leads to an enhanced RNA interference response and not its suppression in the bumblebee Bombus terrestris

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