Ghent University Academic Bibliography

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Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes : implications for phylogeny, species delimitation and life history inference

Xue Qing, Holly Bik, Timur M Yergaliyev, Jianfeng Gu, Pamela Fonderie (UGent) , Sigal Brown‐Miyara, Amir Szitenberg and Wim Bert (UGent)

(2020) MOLECULAR ECOLOGY RESOURCES. 20(1). p.318-332
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- open access
Inference of plant gene regulatory networks using data-driven methods : a practical overview

Shubhada Rajabhau Kulkarni (UGent) and Klaas Vandepoele (UGent)

(2020) BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. 1863(6).
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Two distinct modes of lysis regulation in Campylobacter Fletchervirus and Firehammervirus phages

Athina Zampara, Stephen J. Ahern, Yves Briers (UGent) , Lone Brøndsted and Martine Camilla Holst Sørensen

(2020) VIRUSES-BASEL. 12(11).
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The seagrass Methylome is associated with variation in photosynthetic performance among clonal shoots

Alexander Jueterbock, Christoffer Boström, James A. Coyer, Jeanine L. Olsen, Martina Kopp, Anusha K. S. Dhanasiri, Irina Smolina, Sophie Arnaud-Haond, Yves Van de Peer (UGent) and Galice Hoarau

(2020) FRONTIERS IN PLANT SCIENCE. 11.
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Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Bas Berbers, Pieter-Jan Ceyssens, Pierre Bogaerts, Kevin Vanneste (UGent) , Nancy Roosens, Kathleen Marchal (UGent) and Sigrid C.J. De Keersmaecker

(2020) ANTIBIOTICS-BASEL. 9(8).
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Comparative evolutionary patterns of Burkholderia cenocepacia and B. multivorans during chronic co-infection of a cystic fibrosis patient lung

Amir Hassan (UGent) , Sandra C. dos Santos, Vaughn S. Cooper and Isabel Sa-Correia

(2020) FRONTIERS IN MICROBIOLOGY. 11.
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Pan-cancer pharmacogenetics: targeted sequencing panels or exome sequencing?

Laurentijn Tilleman (UGent) , Björn Heindryckx (UGent) , Dieter Deforce (UGent) and Filip Van Nieuwerburgh (UGent)

(2020) PHARMACOGENOMICS. 21(15). p.1073-1084
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- Miscellaneous
Nymphaea colorata (Blue-petal water lily)

Haibao Tang, Liangsheng Zhang, Fei Chen, Xingtan Zhang, Feng Chen, Hong Ma and Yves Van de Peer (UGent)

(2020) TRENDS IN GENETICS. 36(9). p.718-719
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A seed-specific regulator of triterpene saponin biosynthesis in Medicago truncatula

Bianca Ribeiro (UGent) , Elia Lacchini (UGent) , Keylla Bicalho (UGent) , Jan Mertens, Philipp Arendt (UGent) , Robin Vanden Bossche (UGent) , Gabriela Calegario, Lore Gryffroy (UGent) , Evi Ceulemans (UGent) , Julia Buitink, et al.

(2020) PLANT CELL. 32(6). p.2020-2042
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Targeted mutagenesis using CRISPR-Cas9 in the chelicerate herbivore Tetranychus urticae

Wannes Dermauw (UGent) , Wim Jonckheere (UGent) , Maria Riga, Ioannis Livadaras, John Vontas and Thomas Van Leeuwen (UGent)

(2020) INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 120.
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De novo assembly of transcriptomes from a B73 maize line introgressed with a QTL for resistance to gray leaf spot disease reveals a candidate allele of a lectin receptor-like kinase

Tanya Welgemoed, Rian Pierneef, Lieven Sterck (UGent) , Yves Van de Peer (UGent) , Velushka Swart, Kevin Daniel Scheepers and Dave K. Berger

(2020) FRONTIERS IN PLANT SCIENCE. 11.
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Deficient histone H3 propionylation by BRPF1-KAT6 complexes in neurodevelopmental disorders and cancer

Kezhi Yan, Justine Rousseau, Keren Machol, Laura A. Cross, Katherine E. Agre, Cynthia Forster Gibson, Anne Goverde, Kendra L. Engleman, Hannah Verdin (UGent) , Elfride De Baere (UGent) , et al.

(2020) SCIENCE ADVANCES. 6(4).
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- Journal Article
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Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease

Timothy J. Cherry, Marty G. Yang, David A. Harmin, Peter Tao, Andrew E. Timms, Miriam Bauwens (UGent) , Rando Allikmets, Evan M. Jones, Rui Chen, Elfride De Baere (UGent) , et al.

(2020) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 117(16). p.9001-9012
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- Journal Article
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Effects of thiamethoxam and spinosad on the survival and hypopharyngeal glands of the African honey bee (Apis mellifera intermissa)

Ahmed Hichem Menail, Wided F. Boutefnouchet-Bouchema, Nizar Haddad, Nji Tizi Clauvis Taning (UGent) , Guy Smagghe (UGent) and Wahida Loucif-Ayad

(2020) ENTOMOLOGIA GENERALIS. 40(2). p.207-215
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Xenopus tropicalis : joining the armada in the fight against blood cancer

Dionysia Dimitrakopoulou (UGent) , Dieter Tulkens (UGent) , Pieter Van Vlierberghe (UGent) and Kris Vleminckx (UGent)

(2019) FRONTIERS IN PHYSIOLOGY. 10.
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- Journal Article
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De novo missense variants in RAC3 cause a novel neurodevelopmental syndrome

Gregory Costain, Bert Callewaert (UGent) , Heinz Gabriel, Tiong Y Tan, Susan Walker, John Christodoulou, Tamas Lazar, Björn Menten (UGent) , Julia Orkin, Simon Sadedin, et al.

(2019) GENETICS IN MEDICINE. 21(4). p.1021-1026
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A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics

Eva D'haene (UGent) , Reut Bar-Yaacov, Inbar Bariah, Lies Vantomme (UGent) , Sien Van Loo, Francisco Avila Cobos (UGent) , Karen Verboom (UGent) , Reut Eshel, Rawan Alatawna, Björn Menten (UGent) , et al.

(2019) HUMAN MOLECULAR GENETICS. 28(5). p.818-827
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Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

Elisabeth Veeckman (UGent) , Sabine Van Glabeke, Annelies Haegeman, Hilde Muylle, Frederik RD van Parijs, Stephen L Byrne, Torben Asp, Bruno Studer, Antje Rohde, Isabel Roldàn-Ruiz (UGent) , et al.

(2019) DNA RESEARCH. 26(1). p.1-12
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Polyploidy affects plant growth and alters cell wall composition

Sander Corneillie (UGent) , Nico De Storme (UGent) , Rebecca Van Acker (UGent) , Jonatan Ulrik Fangel, Michiel De Bruyne (UGent) , Riet De Rycke (UGent) , Danny Geelen (UGent) , William George Tycho Willats, Bartel Vanholme (UGent) and Wout Boerjan (UGent)

(2019) PLANT PHYSIOLOGY. 179(1). p.74-87
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Hypomethylated drm1 drm2 cmt3 mutant phenotype of Arabidopsis thaliana is related to auxin pathway impairment

Ivano Forgione, Magdalena Woloszynska (UGent) , Marianna Pacenza, Adriana Chiappetta, Maria Greco, Fabrizio Araniti, Maria Rosa Abenavoli, Maria Van Lijsebettens (UGent) , Maria Beatrice Bitonti and Leonardo Bruno

(2019) PLANT SCIENCE. 280. p.383-396

Academic Bibliography

Widespread prevalence but contrasting patterns of intragenomic rRNA polymorphisms in nematodes : implications for phylogeny, species delimitation and life history inference

Inference of plant gene regulatory networks using data-driven methods : a practical overview

Two distinct modes of lysis regulation in Campylobacter Fletchervirus and Firehammervirus phages

The seagrass Methylome is associated with variation in photosynthetic performance among clonal shoots

Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination

Comparative evolutionary patterns of Burkholderia cenocepacia and B. multivorans during chronic co-infection of a cystic fibrosis patient lung

Pan-cancer pharmacogenetics: targeted sequencing panels or exome sequencing?

Nymphaea colorata (Blue-petal water lily)

A seed-specific regulator of triterpene saponin biosynthesis in Medicago truncatula

Targeted mutagenesis using CRISPR-Cas9 in the chelicerate herbivore Tetranychus urticae

De novo assembly of transcriptomes from a B73 maize line introgressed with a QTL for resistance to gray leaf spot disease reveals a candidate allele of a lectin receptor-like kinase

Deficient histone H3 propionylation by BRPF1-KAT6 complexes in neurodevelopmental disorders and cancer

Mapping the cis-regulatory architecture of the human retina reveals noncoding genetic variation in disease

Effects of thiamethoxam and spinosad on the survival and hypopharyngeal glands of the African honey bee (Apis mellifera intermissa)

Xenopus tropicalis : joining the armada in the fight against blood cancer

De novo missense variants in RAC3 cause a novel neurodevelopmental syndrome

A neuronal enhancer network upstream of MEF2C is compromised in patients with Rett-like characteristics

Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)

Polyploidy affects plant growth and alters cell wall composition

Hypomethylated drm1 drm2 cmt3 mutant phenotype of Arabidopsis thaliana is related to auxin pathway impairment

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