Ghent University Academic Bibliography

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Biological switches : past and future milestones of transcription factor-based biosensors

Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2025) ACS SYNTHETIC BIOLOGY. 14(1). p.72-86
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Biofilm detection in the food industry : challenges in identifying biofilm eps markers and analytical techniques with insights for Listeria monocytogenes

Tessa Tuytschaever (UGent) , Katleen Raes (UGent) and Imca Sampers (UGent)

(2025) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 432.
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False positive hCG testing and upper urinary tract infection

Joris Delanghe (UGent) , Valerie Pede (UGent) , Sylvie Mulliez, Hilde Vanpoucke, Marijn Speeckaert (UGent) , Danielle Vandenweghe and Kris Gevaert (UGent)

(2025) HORMONE MOLECULAR BIOLOGY AND CLINICAL INVESTIGATION.
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A human-like glutaminase-free asparaginase is highly efficacious in ASNS-low leukemia and solid cancer mouse xenograft models

Maaike Van Trimpont (UGent) , Amanda M. Schalk, Kenneth Hofkens (UGent) , Evelien Peeters (UGent) , Sara T'Sas (UGent) , Katrien Vandemeulebroecke (UGent) , Ying Su, Ashley De Loera, Alyssa Garcia, Hui Chen, et al.

(2025) CANCER LETTERS. 611.
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Sputtered iridium oxide electrodes optimization and implementation for impedimetric identification of S. aureus and P. aeruginosa biofilms

Francesco Grassi (UGent) , Charlotte Cums, Dieter Cuypers (UGent) , Rik Verplancke (UGent) , Thijs Vackier, David Schaubroeck (UGent) , Maxime Van Haeverbeke (UGent) , Hans Steenackers and Maaike Op de Beeck (UGent)

(2025) JOURNAL OF THE ELECTROCHEMICAL SOCIETY. 172(3).
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Unravelling the regulatory network behind chitin degradation in Serratia marcescens

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2025) BIOLOGICAL REVIEWS.
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A review of quorum sensing regulating heavy metal resistance in anammox process : relations, mechanisms and prospects

Caiyan Qu, Fan Feng, Jia Tang, Xi Tang, Di Wu (UGent) , Ruiyang Xiao, Xiaobo Min and Chong-Jian Tang

(2024) CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY. 54(5). p.369-384
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Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence Buytaers, Bavo Verhaegen (UGent) , Tom Van Nieuwenhuysen (UGent) , Nancy H. C. Roosens, Kevin Vanneste, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh plus /trh plus genotypes

Marieke Vandeputte (UGent) , Sieglinde Coppens, Peter Bossier (UGent) , Nick Vereecke and Daisy Vanrompay (UGent)

(2024) BMC GENOMICS. 25(1).
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Exploring the modulatory role of bovine lactoferrin on the microbiome and the immune response in healthy and Shiga toxin-producing E. coli challenged weaned piglets

Matthias Dierick (UGent) , Ruben Ongena (UGent) , Daisy Vanrompay (UGent) , Bert Devriendt (UGent) and Eric Cox (UGent)

(2024) JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY. 15(1).
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Orthogonal LoxPsym sites allow multiplexed site-specific recombination in prokaryotic and eukaryotic hosts

Charlotte Cautereels, Jolien Smets, Jonas De Saeger (UGent) , Lloyd Cool, Yanmei Zhu, Anna Zimmermann, Jan Steensels, Anton Gorkovskiy, Thomas B. Jacobs (UGent) and Kevin J. Verstrepen

(2024) NATURE COMMUNICATIONS. 15(1).
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Towards a rational approach to promoter engineering : understanding the complexity of transcription initiation in prokaryotes

Cara Deal (UGent) , Lien De Wannemaeker (UGent) and Marjan De Mey (UGent)

(2024) FEMS MICROBIOLOGY REVIEWS. 48(2).
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Open-endedness in synthetic biology : a route to continual innovation for biological design

Michiel Stock (UGent) and Thomas E. Gorochowski

(2024) SCIENCE ADVANCES. 10(3).
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Uterine microbial ecology and disease in cattle : a review

Ugur Comlekcioglu (UGent) , Sylwia Jezierska, Geert Opsomer (UGent) and Osvaldo Américo Bogado Pascottini (UGent)

(2024) THERIOGENOLOGY. 213. p.66-78
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Proteins à la carte : riboproteogenomic exploration of bacterial N-terminal proteoform expression

Igor Fijalkowski (UGent) , Valdes Snauwaert (UGent) and Petra Van Damme (UGent)

(2024) MBIO. 15(4).
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Impedimetric biofilm characterization with microelectrode arrays using equivalent electrical circuit features and ensemble classifiers

Maxime Van Haeverbeke (UGent) , Charlotte Cums, Thijs Vackier, Dries Braeken, Michiel Stock (UGent) , Hans Steenackers and Bernard De Baets (UGent)

(2024) CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS. 244.
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Microbial drinking water monitoring now and in the future

Thomas Pluym (UGent) , Fien Waegenaar (UGent) , Bart De Gusseme (UGent) and Nico Boon (UGent)

(2024) MICROBIAL BIOTECHNOLOGY. 17(7).
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Delaying production with prokaryotic inducible expression systems

Jasmine De Baets (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2024) MICROBIAL CELL FACTORIES. 23(1).
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Antibacterial synergy between a phage endolysin and citric acid against the Gram-negative kiwifruit pathogen Pseudomonas syringae pv. actinidiae

Hazel M. Sisson, Robert D. Fagerlund, Simon A. Jackson, Yves Briers (UGent) , Suzanne L. Warring and Peter C. Fineran

(2024) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 90(3).
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Impact of operational conditions on drinking water biofilm dynamics and coliform invasion potential

Fien Waegenaar (UGent) , Cristina García Timermans (UGent) , Josefien Van Landuyt (UGent) , Bart De Gusseme (UGent) and Nico Boon (UGent)

(2024) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 90(5).

Academic Bibliography

Biological switches : past and future milestones of transcription factor-based biosensors

Biofilm detection in the food industry : challenges in identifying biofilm eps markers and analytical techniques with insights for Listeria monocytogenes

False positive hCG testing and upper urinary tract infection

A human-like glutaminase-free asparaginase is highly efficacious in ASNS-low leukemia and solid cancer mouse xenograft models

Sputtered iridium oxide electrodes optimization and implementation for impedimetric identification of S. aureus and P. aeruginosa biofilms

Unravelling the regulatory network behind chitin degradation in Serratia marcescens

A review of quorum sensing regulating heavy metal resistance in anammox process : relations, mechanisms and prospects

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Genomic mining of Vibrio parahaemolyticus highlights prevalence of antimicrobial resistance genes and new genetic markers associated with AHPND and tdh plus /trh plus genotypes

Exploring the modulatory role of bovine lactoferrin on the microbiome and the immune response in healthy and Shiga toxin-producing E. coli challenged weaned piglets

Orthogonal LoxPsym sites allow multiplexed site-specific recombination in prokaryotic and eukaryotic hosts

Towards a rational approach to promoter engineering : understanding the complexity of transcription initiation in prokaryotes

Open-endedness in synthetic biology : a route to continual innovation for biological design

Uterine microbial ecology and disease in cattle : a review

Proteins à la carte : riboproteogenomic exploration of bacterial N-terminal proteoform expression

Impedimetric biofilm characterization with microelectrode arrays using equivalent electrical circuit features and ensemble classifiers

Microbial drinking water monitoring now and in the future

Delaying production with prokaryotic inducible expression systems

Antibacterial synergy between a phage endolysin and citric acid against the Gram-negative kiwifruit pathogen Pseudomonas syringae pv. actinidiae

Impact of operational conditions on drinking water biofilm dynamics and coliform invasion potential

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