Ghent University Academic Bibliography

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Non-model bacteria as platforms for endogenous gene expression in synthetic biology

Jorien Poppeliers, Maarten Boon, Marjan De Mey (UGent) , Joleen Masschelein and Rob Lavigne

(2026) NATURE REVIEWS BIOENGINEERING. 4(1). p.67-81
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Carotenoid biosynthesis in bacteria : the crt gene products and their functional roles in the carotenogenic pathways

Emmelie De Ridder (UGent) , Peter Vandamme (UGent) and Anne Willems (UGent)

(2026) CRITICAL REVIEWS IN MICROBIOLOGY. 52(1). p.64-83
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Accelerated adaptive laboratory evolution : a tool for evolutionary biotechnology

Luna Declerck (UGent) , Florent Bouchon (UGent) , Wouter Demeester (UGent) , Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2026) BIOTECHNOLOGY ADVANCES. 86.
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Mediated electron transfer in five prevalent human oral microbial species

David Hernandez Villamor (UGent) , Aya Jeaidi (UGent) , Riet Boydens (UGent) , Korneel Rabaey (UGent) , Tom Van de Wiele (UGent) and Antonin Prévoteau (UGent)

(2026) BIOELECTROCHEMISTRY. 168.
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Designer glycolysomes : colocalisation of glycolytic enzymes on a cellulosome-based synthetic protein scaffold

Marte Elias (UGent) , Kenan Meert (UGent) , Julie Vanderstraeten (UGent) , Babette Lamote (UGent) and Yves Briers (UGent)

(2025) MICROBIAL BIOTECHNOLOGY. 18(4).
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Biofilm busters : exploring the antimicrobial and antibiofilm properties of essential oils against Salmonella Enteritidis

Mariem Somrani Achouri (UGent) , Juan-Pablo Huertas, Asunción Iguaz, Hajer Debbabi and Alfredo Palop

(2025) FOOD SCIENCE AND TECHNOLOGY INTERNATIONAL. 31(6). p.547-553
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Eliminating the tigecycline resistance RND efflux pump gene cluster tmexCD-toprJ in bacteria using CRISPR/Cas9

Lei Xu, Xiaoyu Lu, Yan Li, Patrick Butaye (UGent) , Shangshang Qin, Zhiqiang Wang and Ruichao Li

(2025) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS. 65(1).
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Sputtered iridium oxide electrodes optimization and implementation for impedimetric identification of S. aureus and P. aeruginosa biofilms

Francesco Grassi (UGent) , Charlotte Cums, Dieter Cuypers (UGent) , Rik Verplancke (UGent) , Thijs Vackier, David Schaubroeck (UGent) , Maxime Van Haeverbeke (UGent) , Hans Steenackers and Maaike Op de Beeck (UGent)

(2025) JOURNAL OF THE ELECTROCHEMICAL SOCIETY. 172(3).
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Protein flexibility drives sugar rotation and high substrate promiscuity in a GDP-sugar 4-epimerase

Carlos Alvarez Quispe (UGent) , Koen Beerens (UGent) , Andy-Mark W.H. Thunnissen, Xevi Biarnés, Antoni Planas and Tom Desmet (UGent)

(2025) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 27. p.2375-2385
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Impact of flushing procedures on drinking water biostability and invasion susceptibility in distribution systems

Fien Waegenaar (UGent) , Thomas Pluym (UGent) , Elise Vermeulen, Bart De Gusseme (UGent) and Nico Boon (UGent)

(2025) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 91(6).
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The Achilles heel of protein biochemistry : insolubility of recombinant proteins : a case study about producing a rice enzyme

dr. ing. Tibo De Coninck (UGent) , Hannes Vanhaeren (UGent) and Els Van Damme (UGent)

(2025) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 26(18).
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Membrane filtration reduces nutrient availability and invasion potential in drinking water systems, without affecting mature biofilms

Thomas Pluym (UGent) , Fien Waegenaar (UGent) , Karlien Dejaeger (UGent) , Marie Dhoore, Eline Mestdagh, Emile Cornelissen (UGent) , Nico Boon (UGent) and Bart De Gusseme (UGent)

(2025) FRONTIERS IN MICROBIOLOGY. 16.
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Tracking antibiotics and antibiotic-resistant E. coli in the aquatic environment linked to agriculture

Laurens Tuts (UGent) , Marc Heyndrickx (UGent) , Ilse Becue, Nico Boon (UGent) , Philippe De Maesschalck and Geertrui Rasschaert

(2025) ENVIRONMENTAL POLLUTION. 374.
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Physiological drivers of pks+ E. coli in colorectal cancer

Maude Jans (UGent) and Lars Vereecke (UGent)

(2025) TRENDS IN MICROBIOLOGY. 33(9). p.1003-1017
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Towards sustainable long-chain dicarboxylic acid production : challenges and opportunities

Meriam Vandeputte (UGent) , Emma Diependaele (UGent) , Axelle Van Eupen, Jungho Lee (UGent) , Iris Cornet and Inge Van Bogaert (UGent)

(2025) WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY. 42(1).
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A human-like glutaminase-free asparaginase is highly efficacious in ASNS-low leukemia and solid cancer mouse xenograft models

Maaike Van Trimpont (UGent) , Amanda M. Schalk, Kenneth Hofkens (UGent) , Evelien Peeters (UGent) , Sara T'Sas (UGent) , Katrien Vandemeulebroecke (UGent) , Ying Su, Ashley De Loera, Alyssa Garcia, Hui Chen, et al.

(2025) CANCER LETTERS. 611.
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Expanding the quorum sensing toolbox : promoter libraries and hybrid promoter for dynamic genetic circuits

Jasmine De Baets (UGent) , Iréne Parmentier (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2025) NEW BIOTECHNOLOGY. 90. p.97-113
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Biological switches : past and future milestones of transcription factor-based biosensors

Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2025) ACS SYNTHETIC BIOLOGY. 14(1). p.72-86
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Unravelling the regulatory network behind chitin degradation in Serratia marcescens

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2025) BIOLOGICAL REVIEWS. 100(4). p.1698-1715
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Bioconversion of mushroom chitin-rich waste into valuable chitin oligosaccharides using a combined approach of biocatalysis and precision fermentation

Alex Windels (UGent) , Luna Declerck (UGent) , Sofie Snoeck, Wouter Demeester (UGent) , Chiara Guidi (UGent) , Tom Desmet (UGent) and Marjan De Mey (UGent)

(2025) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. 73(16). p.9769-9781

Academic Bibliography

Non-model bacteria as platforms for endogenous gene expression in synthetic biology

Carotenoid biosynthesis in bacteria : the crt gene products and their functional roles in the carotenogenic pathways

Accelerated adaptive laboratory evolution : a tool for evolutionary biotechnology

Mediated electron transfer in five prevalent human oral microbial species

Designer glycolysomes : colocalisation of glycolytic enzymes on a cellulosome-based synthetic protein scaffold

Biofilm busters : exploring the antimicrobial and antibiofilm properties of essential oils against Salmonella Enteritidis

Eliminating the tigecycline resistance RND efflux pump gene cluster tmexCD-toprJ in bacteria using CRISPR/Cas9

Sputtered iridium oxide electrodes optimization and implementation for impedimetric identification of S. aureus and P. aeruginosa biofilms

Protein flexibility drives sugar rotation and high substrate promiscuity in a GDP-sugar 4-epimerase

Impact of flushing procedures on drinking water biostability and invasion susceptibility in distribution systems

The Achilles heel of protein biochemistry : insolubility of recombinant proteins : a case study about producing a rice enzyme

Membrane filtration reduces nutrient availability and invasion potential in drinking water systems, without affecting mature biofilms

Tracking antibiotics and antibiotic-resistant E. coli in the aquatic environment linked to agriculture

Physiological drivers of pks+ E. coli in colorectal cancer

Towards sustainable long-chain dicarboxylic acid production : challenges and opportunities

A human-like glutaminase-free asparaginase is highly efficacious in ASNS-low leukemia and solid cancer mouse xenograft models

Expanding the quorum sensing toolbox : promoter libraries and hybrid promoter for dynamic genetic circuits

Biological switches : past and future milestones of transcription factor-based biosensors

Unravelling the regulatory network behind chitin degradation in Serratia marcescens

Bioconversion of mushroom chitin-rich waste into valuable chitin oligosaccharides using a combined approach of biocatalysis and precision fermentation

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