Ghent University Academic Bibliography

Journal Article
A1
open access

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Carolina de Carvalho Nunes (UGent) , Jasper Anckaert (UGent) , Fanny De Vloed (UGent) , Jolien De Wyn, Kaat Durinck (UGent) , Jo Vandesompele (UGent) , Franki Speleman (UGent) and Vanessa Vermeirssen (UGent)

(2024) PLOS ONE. 19(1).

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Journal Article
A1
open access

MYCN and SNRPD3 cooperate to maintain a balance of alternative splicing events that drives neuroblastoma progression

Alice Salib, Nisitha Jayatilleke, Janith A. Seneviratne, Chelsea Mayoh, Katleen De Preter (UGent) , Franki Speleman (UGent) , Belamy B. Cheung, Daniel R. Carter and Glenn M. Marshall

(2024) ONCOGENE. 43(5). p.363-377

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Journal Article
A2
open access

Preclinical exploration of the DNA damage response pathway using the interactive neuroblastoma cell line explorer CLEAN

Jonatan Linus Gabre (UGent) , Peter Merseburger (UGent) , Arne Claeys (UGent) , Joachim Siaw (UGent) , Sarah-Lee Bekaert (UGent) , Franki Speleman (UGent) , Bengt Hallberg, Ruth H Palmer and Jimmy Van den Eynden (UGent)

(2024) NAR CANCER. 6(1).

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Journal Article
A1
open access

Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma

Stéphane Van Haver (UGent) , Yujie Fan, Sarah-Lee Bekaert (UGent) , Celine Everaert (UGent) , Wouter Van Loocke (UGent) , Vittorio Zanzani (UGent) , Joke Deschildre (UGent) , Ines Fernandez Maestre, Adrianna Amaro, Vanessa Vermeirssen (UGent) , et al.

(2024) ISCIENCE. 27(1).

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Journal Article
A1
open access

Memory of stochastic single-cell apoptotic signaling promotes chemoresistance in neuroblastoma

Jordan F. Hastings, Sharissa L. Latham, Alvin Kamili, Madeleine S. Wheatley, Jeremy Z. R. Han, Marie Wong-Erasmus, Monica Phimmachanh, Max Nobis, Chiara Pantarelli, Antonia L. Cadell, et al.

(2023) SCIENCE ADVANCES. 9(9).

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Journal Article
A1
open access

Mitotic dysregulation at tumor initiation creates a therapeutic vulnerability to combination anti-mitotic and pro-apoptotic agents for MYCN-driven neuroblastoma

Lei Zhai, Anushree Balachandran, Rebecca Larkin, Janith A. Seneviratne, Sylvia A. Chung, Amit Lalwani, Shoma Tsubota, Dominik Beck, Kenji Kadomatsu, Anneleen Beckers (UGent) , et al.

(2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 24(21).

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Journal Article
A2
open access

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Jill Deleu (UGent) , Hanne Van Droogenbroeck (UGent) , Jasper Anckaert (UGent) , Anneleen Decock (UGent) , Jilke De Wilde (UGent) , Kaat Durinck (UGent) , Liselot Mus (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Kathleen Schoofs (UGent) , et al.

(2023) EXRNA. 5(2).

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Conference Paper
C3
open access

Exploration of neuroblastoma xenograft models for the analysis of tumoral cell-free RNA in murine blood plasma

Jill Deleu (UGent) , Hanne Van Droogenbroeck (UGent) , Jasper Anckaert (UGent) , Jilke De Wilde (UGent) , Kaat Durinck (UGent) , Liselot Mus (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Kathleen Schoofs (UGent) , Franki Speleman (UGent) , et al.

(2023) Advances in Neuroblastoma Research (ANR) Meeting 2023, Abstracts.

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Journal Article
A2
open access

Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation

Alan Van Goethem (UGent) , Jill Deleu (UGent) , Nurten Yigit (UGent) , Celine Everaert (UGent) , Myrthala Moreno-Smith, Sanjeev A Vasudevan, Fjoralba Zeka (UGent) , Fleur Demuynck (UGent) , Eveline Barbieri, Franki Speleman (UGent) , et al.

(2023) NAR CANCER. 5(1).

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Conference Paper
C3
open access

A harmonized single-cell transcriptomic atlas of human neuroblastoma

Noah Bonine (UGent) , Vittorio Zanzani (UGent) , Liselot Mus (UGent) , Bavo Vanneste (UGent) , Christian Zwicker (UGent) , Tinne Thoné (UGent) , Sofie Roelandt (UGent) , Cécile Thirant, Amira Kramdi, Isabelle Janoueix-Lerosey, et al.

(2023) Advances in Neuroblastoma Research (ANR) Meeting 2023, Abstracts.

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Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA

Vanessa Vermeirssen (UGent) , Jill Deleu (UGent) , Annelien Morlion (UGent) , Celine Everaert (UGent) , Jilke De Wilde (UGent) , Jasper Anckaert (UGent) , Kaat Durinck (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Franki Speleman (UGent) , et al.

(2023)

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Journal Article
A1
open access

SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry

Bieke Decaesteker (UGent) , Amber Louwagie (UGent) , Siebe Loontiens (UGent) , Fanny De Vloed (UGent) , Sarah-Lee Bekaert (UGent) , Juliette Roels (UGent) , Suzanne Vanhauwaert (UGent) , Sara De Brouwer (UGent) , Ellen Sanders, A Berezovskaya, et al.

(2023) NATURE COMMUNICATIONS. 14(1).

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Research Data

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Jill Deleu (UGent) , Vanessa Vermeirssen (UGent) , Annelien Morlion (UGent) , Celine Everaert (UGent) , Jilke De Wilde (UGent) , Jasper Anckaert (UGent) , Kaat Durinck (UGent) , Justine Nuytens (UGent) , Muhammad Rishfi (UGent) , Franki Speleman (UGent) , et al.

(2022)

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Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah Bonine (UGent) , Tinne Thoné (UGent) , Bavo Vanneste (UGent) , Liselot Mus (UGent) , Celine Everaert (UGent) , Bram De Wilde (UGent) , Franki Speleman (UGent) , Charlotte Scott (UGent) and Katleen De Preter (UGent)

(2022) EMBO Workshop 'Cancer cell signaling : Linking molecular knowledge to cancer therapy', Abstracts.

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Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Noah Bonine (UGent) , Tinne Thoné (UGent) , Bavo Vanneste (UGent) , Liselot Mus (UGent) , Celine Everaert (UGent) , Bram De Wilde (UGent) , Franki Speleman (UGent) , Charlotte Scott (UGent) and Katleen De Preter (UGent)

(2022) Single Cell Network Ghent (SING) kick-off event, Abstracts.

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Cellular senescence in neuroblastoma

Sofia Zanotti, Bieke Decaesteker (UGent) , Suzanne Vanhauwaert (UGent) , Bram De Wilde (UGent) , Winnok De Vos and Franki Speleman (UGent)

(2022) BRITISH JOURNAL OF CANCER. 126(11). p.1529-1538

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Miscellaneous
open access

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

Carolina de Carvalho Nunes (UGent) , Jasper Anckaert (UGent) , Fanny De Vloed (UGent) , Jolien De Wyn, Kaat Durinck (UGent) , Jo Vandesompele (UGent) , Franki Speleman (UGent) and Vanessa Vermeirssen (UGent)

(2022) BIORXIV.

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Journal Article
A1
open access

RRM2 enhances MYCN-driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition

Carolina de Carvalho Nunes (UGent) , Lisa Depestel (UGent) , Liselot Mus (UGent) , Kaylee M. Keller, Louis Delhaye (UGent) , Amber Louwagie (UGent) , Muhammad Rishfi (UGent) , Alex Whale, Neesha Kara, Simon R. Andrews, et al.

(2022) SCIENCE ADVANCES. 8(28).

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The adrenergic-specific long non-coding RNA NESPR controls survival of neuroblastoma cells

Louis Delhaye (UGent) , Eric de Bony de Lavergne (UGent) , Dries Rombaut, Lim Fang Qi, Bieke Decaesteker (UGent) , Lisa Depestel (UGent) , Amber Louwagie (UGent) , Eva D'haene (UGent) , Pieter-Jan Volders (UGent) , Nurten Yigit (UGent) , et al.

(2022) OncoPoint Symposium, 8th, Abstracts.

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RRM2 enhances MYCN driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition

Lisa Depestel (UGent) , Carolina de Carvalho Nunes (UGent) , Liselot Mus (UGent) , Iris Nelen (UGent) , Louis Delhaye (UGent) , Kaylee Keller, Volodimir Olexiouk, Fanny De Vloed (UGent) , Ellen Sanders (UGent) , Aline Eggermont (UGent) , et al.

(2022) OncoPoint Symposium, 8th, Abstracts.

Academic Bibliography

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

MYCN and SNRPD3 cooperate to maintain a balance of alternative splicing events that drives neuroblastoma progression

Preclinical exploration of the DNA damage response pathway using the interactive neuroblastoma cell line explorer CLEAN

Human iPSC modeling recapitulates in vivo sympathoadrenal development and reveals an aberrant developmental subpopulation in familial neuroblastoma

Memory of stochastic single-cell apoptotic signaling promotes chemoresistance in neuroblastoma

Mitotic dysregulation at tumor initiation creates a therapeutic vulnerability to combination anti-mitotic and pro-apoptotic agents for MYCN-driven neuroblastoma

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Exploration of neuroblastoma xenograft models for the analysis of tumoral cell-free RNA in murine blood plasma

Longitudinal evaluation of serum microRNAs as biomarkers for neuroblastoma burden and therapeutic p53 reactivation

A harmonized single-cell transcriptomic atlas of human neuroblastoma

Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA

SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry

Exploration of neuroblastoma xenograft models for tumor extracellular RNA profiling in murine blood plasma

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Complementarity of single-nucleus and single-cell RNA sequencing to study the transcriptional heterogeneity of neuroblastoma tumors

Cellular senescence in neuroblastoma

HTSplotter : an end-to-end data processing, analysis and visualisation tool for chemical and genetic in vitro perturbation screening

RRM2 enhances MYCN-driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition

The adrenergic-specific long non-coding RNA NESPR controls survival of neuroblastoma cells

RRM2 enhances MYCN driven neuroblastoma formation and acts as a synergistic target with CHK1 inhibition

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