Ghent University Academic Bibliography

Journal Article
A1
open access

Multifocal cohort analysis unveils cell types associated with regional lymph node seeding in prostate cancer

Louise de Schaetzen van Brienen (UGent) , Taewoo Jung (UGent) , Maarten Larmuseau (UGent) , Kim Van der Eecken, Marie Van Hecke (UGent) , Jef Haerinck (UGent) , Jordy De Coninck (UGent) , Jan Vanwelkenhuyzen (UGent) , Nicolaas Lumen (UGent) , Bram De Laere (UGent) , et al.

(2026) GENOME MEDICINE. 18(1).

Multifocal cohort analysis unveils cell types associated with regional lymph node seeding in prostate cancer

Simplified mechanical organs in aquatic plants are associated with the loss of expansin genes

Recovery and microbial host assignment of mobile genetic elements in complex microbiomes : insights from a spiked gut sample

Filtering for truth : high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN)

smartSim : simulation of splice aware single cell smart-seq3 data

Prior knowledge injection into deep learning models predicting gene expression from whole slide images

Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing : a case study on fluoroquinolone resistance

Detection of Bacillus production strains and contaminants in food enzyme products

Synthetic multimodal data modelling for data imputation

EPS inhibitor treatment of Salmonella impacts evolution without selecting for resistance to biofilm inhibition

ELLIPSIS : robust quantification of splicing in scRNA-seq

Assessing the authenticity and purity of a commercial Bacillus thuringiensis bioinsecticide through whole genome sequencing and metagenomics approaches

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Digital profiling of gene expression from histology images with linearized attention

Using a combination of short- and long-read sequencing to investigate the diversity in plasmid- and chromosomally encoded extended-spectrum beta-lactamases (ESBLs) in clinical Shigella and Salmonella isolates in Belgium

Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii

Development of a portable on-site applicable metagenomic data generation workflow for enhanced pathogen and antimicrobial resistance surveillance

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Whole slide imaging-based prediction of TP53 mutations identifies an aggressive disease phenotype in prostate cancer