Ghent University Academic Bibliography

Journal Article
A1
open access

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Robin Guevarra, Stefan Magez (UGent) , Eveline Peeters, Mi Sook Chung, Kyung Hyun Kim and Magdalena Radwanska (UGent)

(2021) PLOS ONE. 16(1).

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Journal Article
A1
open access

Microbial biosurfactant research : time to improve the rigour in the reporting of synthesis, functional characterization and process development

Matthew Simon Twigg, Niki Baccile, Ibrahim M. Banat, Eric Déziel, Roger Marchant, Sophie Roelants (UGent) and Inge Van Bogaert (UGent)

(2021) MICROBIAL BIOTECHNOLOGY. 14(1). p.147-170

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Journal Article
A1
open access

Antimicrobial usage and resistance in companion animals : a cross-sectional study in three European countries

Philip Joosten (UGent) , Daniela Ceccarelli, Evelien Odent (UGent) , Steven Sarrazin (UGent) , Haitske Graveland, Liese Van Gompel, Antonio Battisti, Andrea Caprioli, Alessia Franco, Jaap A. Wagenaar, et al.

(2020) ANTIBIOTICS-BASEL. 9(2).

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A1
open access

Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed

Daria Fijalkowska (UGent) , Igor Fijalkowski (UGent) , Patrick Willems (UGent) and Petra Van Damme (UGent)

(2020) FEMS MICROBIOLOGY REVIEWS. 44(4). p.418-431

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A1
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Image-based dynamic phenotyping reveals genetic determinants of filamentation-mediated beta-lactam tolerance

Taiyeb Zahir, Dorien Wilmaerts, Sabine Franke, Bram Weytjens (UGent) , Rafael Camacho, Kathleen Marchal (UGent) , Johan Hofkens, Maarten Fauvart and Jan Michielsen

(2020) FRONTIERS IN MICROBIOLOGY. 11.

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Journal Article
A1
open access

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Cristina Garcia-Graells, Bas Berbers, Bavo Verhaegen, Kevin Vanneste (UGent) , Kathleen Marchal (UGent) , Nancy H. C. Roosens, Nadine Botteldoorn and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY. 324.

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Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Nuria Orive-Milla, Tom Delmulle (UGent) , Marjan De Mey (UGent) , Magda Faijes and Antoni Planas

(2020) METABOLIC ENGINEERING. 61. p.106-119

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Identification of mobile colistin resistance genes (mcr-1.1, mcr-5 and mcr-8.1) in Enterobacteriaceae and Alcaligenes faecalis of human and animal origin, Nigeria

Emmanuel O. Ngbede, Anil Poudel, Anwar Kalalah, Yi Yang, Folasade Adekanmbi, Alex A. Adikwu, Andrew M. Adamu, Levi M. Mamfe, Salem T. Daniel, Nicodemus M. Useh, et al.

(2020) INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS. 56(3).

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Comparison of microbiota, antimicrobial resistance genes and mobile genetic elements in flies and the feces of sympatric animals

Anil Poudel, Yuan Kang, Rabindra K. Mandal, Anwar Kalalah, Patrick Butaye (UGent) , Terri Hathcock, Patrick Kelly, Paul Walz, Kenneth Macklin, Russell Cattley, et al.

(2020) FEMS MICROBIOLOGY ECOLOGY. 96(4).

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Effect of Ultra-high temperature processing on the physicochemical properties and antibacterial activity of d-limonene emulsions stabilized by β-lactoglobulin/Gum arabic bilayer membranes

Jiaqi Su, Qing Guo, Yongjian Cai (UGent) , Teng Wang (UGent) , Like Mao, Yanxiang Gao, Fang Yuan and Paul Van der Meeren (UGent)

(2020) FOOD CHEMISTRY. 332.

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Journal Article
A1
open access

Phenotypic heterogeneity as key factor for growth and survival under oligotrophic conditions

Kankana Kundu (UGent) , Nina Weber, Christian Griebler and Martin Elsner

(2020) ENVIRONMENTAL MICROBIOLOGY. 22(8). p.3339-3356

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Journal Article
A1
open access

Dogs and their owners have frequent and intensive contact

Philip Joosten (UGent) , Alexia Van Cleven (UGent) , Steven Sarrazin (UGent) , Dominique Paepe (UGent) , An De Sutter (UGent) and Jeroen Dewulf (UGent)

(2020) INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH. 17(12).

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Journal Article
A1
open access

DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility

Ian Vandenbussche (UGent) , Andrea Sass (UGent) , Marta Pinto-Carbó, Olga Mannweiler, Leo Eberl and Tom Coenye (UGent)

(2020) MSPHERE. 5(4).

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Journal Article
A1
open access

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia Saltykova (UGent) , Florence Buytaers (UGent) , Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 21(16).

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Journal Article
A1
open access

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence Buytaers (UGent) , Assia Saltykova (UGent) , Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal (UGent) and Sigrid C. J. De Keersmaecker

(2020) MICROORGANISMS. 8(8).

Academic Bibliography

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Microbial biosurfactant research : time to improve the rigour in the reporting of synthesis, functional characterization and process development

Antimicrobial usage and resistance in companion animals : a cross-sectional study in three European countries

Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed

Image-based dynamic phenotyping reveals genetic determinants of filamentation-mediated beta-lactam tolerance

First detection of a plasmid located carbapenem resistant bla(VIM-1) gene in E. coli isolated from meat products at retail in Belgium in 2015

Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Identification of mobile colistin resistance genes (mcr-1.1, mcr-5 and mcr-8.1) in Enterobacteriaceae and Alcaligenes faecalis of human and animal origin, Nigeria

Comparison of microbiota, antimicrobial resistance genes and mobile genetic elements in flies and the feces of sympatric animals

Effect of Ultra-high temperature processing on the physicochemical properties and antibacterial activity of d-limonene emulsions stabilized by β-lactoglobulin/Gum arabic bilayer membranes

Phenotypic heterogeneity as key factor for growth and survival under oligotrophic conditions

Dogs and their owners have frequent and intensive contact

DNA methylation epigenetically regulates gene expression in Burkholderia cenocepacia and controls biofilm formation, cell aggregation, and motility

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

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