Ghent University Academic Bibliography

Journal Article
A2
open access

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Dora Szakonyi (UGent) , Sofie Van Landeghem (UGent) , Katja Baerenfaller, Lieven Baeyens (UGent) , Jonas Blomme (UGent) , Rubén Casanova-Sáez, Stefanie De Bodt (UGent) , David Esteve-Bruna, Fabio Fiorani (UGent) , Nathalie Gonzalez Sanchez (UGent) , et al.

(2015) CURRENT PLANT BIOLOGY. 2. p.1-11

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Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors

Megan Andriankaja (UGent) , Selahattin Danisman, Lorin Mignolet (UGent) , Hannes Claeys (UGent) , Irina Kochanke, Mattias Vermeersch (UGent) , Liesbeth De Milde (UGent) , Stefanie De Bodt (UGent) , Veronique Storme (UGent) , Aleksandra Skirycz (UGent) , et al.

(2014) PLANT MOLECULAR BIOLOGY. 85(3). p.233-245

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ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Liesbeth Vercruyssen (UGent) , Aurine Verkest (UGent) , Nathalie Gonzalez Sanchez (UGent) , Ken Heyndrickx (UGent) , Dominique Eeckhout (UGent) , Soon-Ki Han, Teddy Jégu, Rafal Archacki, Jelle Van Leene (UGent) , Megan Andriankaja (UGent) , et al.

(2014) PLANT CELL. 26(1). p.210-229

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Gibberellins and DELLAs: central nodes in growth regulatory networks

Hannes Claeys (UGent) , Stefanie De Bodt (UGent) and Dirk Inzé (UGent)

(2014) TRENDS IN PLANT SCIENCE. 19(4). p.231-239

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Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves

Wim Verelst (UGent) , Edoardo Bertolini, Stefanie De Bodt (UGent) , Klaas Vandepoele (UGent) , Marlies Demeulenaere (UGent) , Mario Enrico Pé and Dirk Inzé (UGent)

(2013) MOLECULAR PLANT. 6(2). p.311-322

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Journal Article
A1
open access

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Sofie Van Landeghem (UGent) , Stefanie De Bodt (UGent) , Zuzanna Drebert (UGent) , Dirk Inzé (UGent) and Yves Van de Peer (UGent)

(2013) PLANT CELL. 25(3). p.794-807

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Book Chapter

A guide to CORNET for the construction of coexpression and protein-protein interaction networks

Stefanie De Bodt (UGent) and Dirk Inzé (UGent)

(2013) Jasmonate signaling : methods and protocols. In Methods in Molecular Biology 1011. p.327-343

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ETHYLENE RESPONSE FACTOR6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis

Marieke Dubois (UGent) , Aleksandra Skirycz (UGent) , Hannes Claeys (UGent) , Katrien Maleux (UGent) , Stijn Dhondt (UGent) , Stefanie De Bodt (UGent) , Robin Vanden Bossche (UGent) , Liesbeth De Milde (UGent) , Takeshi Yoshizumi, Minami Matsui, et al.

(2013) PLANT PHYSIOLOGY. 162(1). p.319-332

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Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process

Megan Andriankaja (UGent) , Stijn Dhondt (UGent) , Stefanie De Bodt (UGent) , Hannes Vanhaeren (UGent) , Frederik Coppens (UGent) , Liesbeth De Milde (UGent) , Per Mühlenbock (UGent) , Aleksandra Skirycz (UGent) , Nathalie Gonzalez Sanchez (UGent) , Gerrit Beemster (UGent) , et al.

(2012) DEVELOPMENTAL CELL. 22(1). p.64-78

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CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

Stefanie De Bodt (UGent) , Jens Hollunder (UGent) , Hilde Nelissen (UGent) , Nick Meulemeester and Dirk Inzé (UGent)

(2012) NEW PHYTOLOGIST. 195(3). p.707-720

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A Reciprocal N-15-labeling proteomic analysis of expanding arabidopsis leaves subjected to osmotic stress indicates importance of mitochondria in preserving plastid functions

Aleksandra Skirycz (UGent) , Samy Memmi (UGent) , Stefanie De Bodt (UGent) , Katrien Maleux (UGent) , Toshihiro Obata, Alisdai R Fernie, Bart Devreese (UGent) and Dirk Inzé (UGent)

(2011) JOURNAL OF PROTEOME RESEARCH. 10(3). p.1018-1029

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Journal Article
A1
open access

Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest

Aleksandra Skirycz (UGent) , Hannes Claeys (UGent) , Stefanie De Bodt (UGent) , Akira Oikawa, Shoko Shinoda, Megan Andriankaja (UGent) , Katrien Maleux (UGent) , Nubia Barbosa Eloy (UGent) , Frederik Coppens (UGent) , Sang-Dong Yoo, et al.

(2011) PLANT CELL. 23(5). p.1876-1888

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Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots

Katrien D'haeseleer (UGent) , Griet Den Herder (UGent) , Carole Laffont, Julie Plet, Virginie Mortier (UGent) , Christine Lelandais-Briere, Stefanie De Bodt (UGent) , Annick De Keyser (UGent) , Martin Crespi, Marcella Holsters (UGent) , et al.

(2011) NEW PHYTOLOGIST. 191(3). p.647-661

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CORNET: a user-friendly tool for data mining and integration

Stefanie De Bodt (UGent) , Diana Angelica Carvajal Bernal (UGent) , Jens Hollunder (UGent) , Joost Van den Cruyce (UGent) , Sara Movahedi (UGent) and Dirk Inzé (UGent)

(2010) PLANT PHYSIOLOGY. 152(3). p.1167-1179

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Genome sequencing and analysis of the model grass Brachypodium distachyon

J.P. Vogel, D.F. Garvin, T.C. Mockler, J. Schmutz, D. Rokhsar, M.W. Bevan, K. Barry, S. Lucas, M. Harmon Smith, K. Lail, et al.

(2010) Nature. 463(7282). p.763-768

Academic Bibliography

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors

ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development

Gibberellins and DELLAs: central nodes in growth regulatory networks

Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

A guide to CORNET for the construction of coexpression and protein-protein interaction networks

ETHYLENE RESPONSE FACTOR6 acts as a central regulator of leaf growth under water-limiting conditions in Arabidopsis

Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

A Reciprocal N-15-labeling proteomic analysis of expanding arabidopsis leaves subjected to osmotic stress indicates importance of mitochondria in preserving plastid functions

Pause-and-stop: the effects of osmotic stress on cell proliferation during early leaf development in Arabidopsis and a role for ethylene signaling in cell cycle arrest

Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots

CORNET: a user-friendly tool for data mining and integration

Genome sequencing and analysis of the model grass Brachypodium distachyon

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