Ghent University Academic Bibliography

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Advancing root developmental research through single-cell technologies

Max Minne (UGent) , Yuji Ke (UGent) , Maite Saura Sanchez (UGent) and Bert De Rybel (UGent)

(2022) CURRENT OPINION IN PLANT BIOLOGY. 65.
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- Book Chapter
Engineering of yeast glycoprotein expression

Charlot De Wachter (UGent) , Linde Van Landuyt (UGent) and Nico Callewaert (UGent)

(2021) Advances in glycobiotechnology. In Advances in Biochemical Engineering/Biotechnology 175. p.93-136
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- Conference Paper
- C3
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Mimicking early host-Batrachochytrium salamandrivorans interactions using in vitro-infection models

Elin Verbrugghe (UGent) , Frank Pasmans (UGent) and An Martel (UGent)

(2021) 69th WDA / 14th EWDA Joint Conference, Abstracts.
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Effects of two types of calorie restriction on methylation levels of adiponectin receptor 1 (AdipoR1) and leptin receptor overlapping transcript (Leprot) in a MMTV-TGF-α breast cancer mouse model

Münevver Burcu Cicekdal (UGent) , BT Kazan, BG Tuna, U Ozorhan, ID Ekici, F Zhu, O Suakar, A Kuskucu, OF Bayrak, K Arcaro, et al.

(2021) BRITISH JOURNAL OF NUTRITION. 125(1). p.1-9
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RyR2 regulates Cx43 hemichannel intracellular Ca2+-dependent activation in cardiomyocytes

Alessio Lissoni (UGent) , Paco Hulpiau (UGent) , Tânia Martins-Marques, Nan Wang (UGent) , Geert Bultynck, Rainer Schulz, Katja Witschas (UGent) , Henrique Girao, Maarten De Smet (UGent) and Luc Leybaert (UGent)

(2021) CARDIOVASCULAR RESEARCH. 117(1). p.123-136
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Bioactivity screening of hydrolysates from brown crab processing side streams fermented by marine Pseudoalteromonas strains

Yang Zou (UGent) , Emiliana Tortorella, Johan Robbens, Marc Heyndrickx (UGent) , Jane Debode, Donatella De Pascale and Katleen Raes (UGent)

(2021) WASTE AND BIOMASS VALORIZATION. 12(5). p.2459-2468
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Photoconvertible fluorescent proteins : a versatile tool in zebrafish skeletal imaging

Jan Willem Bek (UGent) , Adelbert De Clercq (UGent) , Hanna De Saffel (UGent) , Mieke Soenens (UGent) , Ann Huysseune (UGent) , Paul Witten (UGent) , Paul Coucke (UGent) and Andy Willaert (UGent)

(2021) JOURNAL OF FISH BIOLOGY. 98(4). p.1007-1017
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- Miscellaneous
Mass spectrometry-based clinical proteomics : a revival

Jarne Pauwels (UGent) and Kris Gevaert (UGent)

(2021) EXPERT REVIEW OF PROTEOMICS. 18(6). p.411-414
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- Journal Article
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Binding of Orysata lectin induces an immune response in insect cells

Pengyu Chen (UGent) , Kristof De Schutter (UGent) , Jarne Pauwels (UGent) , Kris Gevaert (UGent) , Els Van Damme (UGent) and Guy Smagghe (UGent)

(2021) INSECT SCIENCE.
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Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models

Charlène Roussel, Kim De Paepe (UGent) , Wessam Galia, Jana De Bodt (UGent) , Sandrine Chalancon, Sylvain Denis, Francoise Leriche, Pascal Vandekerkove, Nathalie Ballet, Stephanie Blanquet-Diot, et al.

(2021) GUT MICROBES. 13(1).
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- PhD Thesis
Exploring RNA signatures in human biofluids as novel liquid biopsy tool

Eva Hulstaert (UGent)

(2021)
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Cyclin D2 overexpression drives B1a-derived MCL-like lymphoma in mice

Tim Pieters (UGent) , Sara T'Sas (UGent) , Stijn Vanhee (UGent) , André Pedro Pinto De Almeida (UGent) , Yasmine Driege (UGent) , Juliette Roels (UGent) , Wouter Van Loocke (UGent) , Willem Daneels (UGent) , Mathijs Baens, Arnaud Marchand, et al.

(2021) JOURNAL OF EXPERIMENTAL MEDICINE. 218(10).
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The ever-expanding Pseudomonas genus : description of 43 new species and partition of the Pseudomonas putida group

Lea Girard, Cedric Lood, Monica Höfte (UGent) , Peter Vandamme (UGent) , Hassan Rokni-Zadeh, Vera van Noort, Rob Lavigne and Rene De Mot

(2021) MICROORGANISMS. 9(8).
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- PhD Thesis
Human exposure and potential health effects of marine compounds in sea spray aerosols

Emmanuel Van Acker (UGent)

(2021)
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Myotypes : the relevance of muscle fiber typology in sports

Eline Lievens (UGent) , Flore Stassen (UGent) and Wim Derave (UGent)

(2021)
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Gelatin‐based versus alginate‐based hydrogels : providing insight in wound healing potential

Oana Maria Ionescu, Arn Mignon (UGent) , Manon Minsart (UGent) , Jasper Van Hoorick (UGent) , Ioannis Gardikiotis, Irina‐Draga Caruntu, Simona Eliza Giusca, Sandra Van Vlierberghe (UGent) and Lenuta Profire

(2021) MACROMOLECULAR BIOSCIENCE.
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- Conference Paper
Seminar: The Quest for Deus Ex Machina: Harnessing the Power of Machine Learning for Synthetic Biology

Friederike Mey (UGent) , Jim Clauwaert (UGent) , Kirsten Van Huffel (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2021)
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Development and validation of liquid chromatography-tandem mass spectrometry methods for the quantification of cefquinome, ceftiofur, and desfuroylceftiofuracetamide in porcine feces with emphasis on analyte stability

Sofie Rutjens (UGent) , Siska Croubels (UGent) , Siegrid De Baere (UGent) and Mathias Devreese (UGent)

(2021) MOLECULES. 26(15).
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Protein kinase and phosphatase control of plant temperature responses

Myrthe Praat, Ive De Smet (UGent) and Martijn van Zanten

(2021) JOURNAL OF EXPERIMENTAL BOTANY.
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Nature and nurture : genotype-dependent differential responses of root architecture to agar and soil environments

Merijn Kerstens, Vera Hesen, Kavya Yalamanchili, Andrea Bimbo, Stephen Grigg, Davy Opdenacker (UGent) , Tom Beeckman (UGent) , Renze Heidstra and Viola Willemsen

(2021) GENES. 12(7).
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Profiling of extracellular small RNAs highlights a strong bias towards non-vesicular secretion

Helena Sork, Mariana Conceicao, Giulia Corso, Joel Nordin, Yi Xin Fiona Lee, Kaarel Krjutskov, Jakub Orzechowski Westholm, Pieter Vader, Marie Pauwels (UGent) , Roosmarijn Vandenbroucke (UGent) , et al.

(2021) CELLS. 10(6).
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High-resolution X-ray computed tomography : a new workflow for the analysis of xylogenesis and intra-seasonal wood biomass production

Romain Lehnebach (UGent) , Matteo Campioli, Jozica Gričar, Peter Prislan, Bertold Mariën, Hans Beeckman and Jan Van den Bulcke (UGent)

(2021) FRONTIERS IN PLANT SCIENCE. 12.
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Analyzing high-dimensional cytometry data using FlowSOM

Katrien Quintelier (UGent) , Artuur Couckuyt (UGent) , Annelies Emmaneel (UGent) , Joachim Aerts, Yvan Saeys (UGent) and Sofie Van Gassen (UGent)

(2021) NATURE PROTOCOLS. 16(8). p.3775-3801
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Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity

L. Vanderbeke, P. Van Mol, Y. Van Herck, F. De Smet, S. Humblet-Baron, K. Martinod, A. Antoranz, I. Arijs, B. Boeckx, F. M. Bosisio, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Conference Paper
- C3
A bacterial mixed culture is capable of degrading the mycotoxin deoxynivalenol into a metabolite, which still has a high toxic effect towards eukaryotic cells

Ilse Vanhoutte (UGent) , Caroline De Tender (UGent) , Kristel Demeyere (UGent) , Mohamed Fathi Abdallah Abdelmohsen (UGent) , Sarah Ommeslag, Pieter Vermeir (UGent) , Sarah De Saeger (UGent) , Jane Debode, Evelyne Meyer (UGent) , Kris Audenaert (UGent) , et al.

(2021) European Fusarium seminar, 15th, Abstracts.
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Bacterial enrichment cultures biotransform the mycotoxin deoxynivalenol into a novel metabolite toxic to plant and porcine cells

Ilse Vanhoutte (UGent) , Caroline De Tender (UGent) , Kristel Demeyere (UGent) , Mohamed Fathi Abdallah Abdelmohsen (UGent) , Sarah Ommeslag, Pieter Vermeir (UGent) , Sarah De Saeger (UGent) , Jane Debode, Evelyne Meyer (UGent) , Siska Croubels (UGent) , et al.

(2021) TOXINS. 13(8).
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A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root

Moritz Graeff, Surbhi Rana, Jos Wendrich (UGent) , Julien Dorier, Thomas Eekhout (UGent) , Ana Cecilia Aliaga Fandino, Nicolas Guex, George Bassel, Bert De Rybel (UGent) and Christian Hardtke

(2021) MOLECULAR PLANT.
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Spectral prediction features as a solution for the search space size problem in proteogenomics

Steven Verbruggen (UGent) , Siegfried Gessulat, Ralf Gabriels (UGent) , Anna Matsaroki (UGent) , Hendrik Van de Voorde (UGent) , Bernhard Kuster, Sven Degroeve (UGent) , Lennart Martens (UGent) , Wim Van Criekinge (UGent) , Mathias Wilhelm, et al.

(2021) MOLECULAR & CELLULAR PROTEOMICS. 20.
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Cyperus prophyllatus : an endangered aquatic new species of Cyperus L. (Cyperaceae) with a exceptional spikelet disarticulation pattern among about 950 species, including molecular phylogenetic, anatomical and (micro)morphological data

André Rodolfo de Oliveira Ribeiro, Luciana Pereira-Silva, Jéssika Paula Silva Vieira, Isabel Larridon (UGent) , Vinicius Santos Ribeiro, Guilherme Felitto, Geovane Souza Siqueira, Anderson Alves-Araújo and Marccus Alves

(2021) PLOS ONE. 16(6).
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A reflux-and-growth mechanism explains oscillatory patterning of lateral root branching sites

Thea van den Berg, Kavya Yalamanchili, Hugues De Gernier (UGent) , Joana Santos Teixeira, Tom Beeckman (UGent) , Ben Scheres, Viola Willemsen and Kirsten ten Tusscher

(2021) DEVELOPMENTAL CELL. 56(15). p.2176-2191
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Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation

Yong‐Peng Ma, Hafiz Muhammad Wariss, Rong‐Li Liao, Ren‐Gang Zhang, Quan‐Zheng Yun, Richard G. Olmstead, John H. Chau, Richard I. Milne, Yves Van de Peer (UGent) and Wei‐Bang Sun

(2021) NEW PHYTOLOGIST.
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The 5-formyl-tetrahydrofolate proteome links folates with C/N metabolism and reveals feedback regulation of folate biosynthesis

Weichao Li, Qiuju Liang, Ratnesh Mishra (UGent) , Raul Sanchez Muñoz (UGent) , Huan Wang, Xin Chen, Dominique Van Der Straeten (UGent) , Chunyi Zhang and Youli Xiao

(2021) PLANT CELL.
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- C3
In-depth single-cell analysis of translation-competent HIV-1 reservoirs identifies cellular sources of residual viremia and rebound viruses

Basiel Cole, Laurens Lambrechts (UGent) , Pierre Gantner, Ytse Noppe (UGent) , Noah Bonine (UGent) , Lennie Chen, Sarah Palmer, James Mullins, Nicolas Chomont, Marion Pardons (UGent) , et al.

(2021) 11th IAS Conference on HIV Science, Abstracts.
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CkP1 is a novel S16-like broad-host-range myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres

Hugo Oliveira, Silvio B. Santos, Diana P. Pires, Graca Pinto, Rita Domingues, Yves Briers (UGent) , Mathias Schmelcher, Andreas Dötsch and Joana Azeredo

(2021) Biennial Evergreen Phage Meeting, 24th, Abstracts.
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Periodic root branching is influenced by light through an HY1-HY5-auxin pathway

Xingliang Duan (UGent) , Sheng Xu, Yuanming Xie (UGent) , Lun Li, Weicong Qi, Boris Parizot (UGent) , Yonghong Zhang, Tao Chen, Yi Han, Frank Van Breusegem (UGent) , et al.

(2021) CURRENT BIOLOGY. 31(17). p.3834-3847.e5
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CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2 modulates auxin homeostasis and signaling

Sonhita Chakraborty, Masatsugu Toyota, Wolfgang Moeder, Kimberley Chin, Alex Fortuna, Marc Champigny, Steffen Vanneste (UGent) , Simon Gilroy, Tom Beeckman (UGent) , Eiji Nambara, et al.

(2021) PLANT PHYSIOLOGY.
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An independent evolutionary origin for insect deterrent cucurbitacins in Iberis amara

Lemeng Dong, Aldo Almeida, Jacob Pollier (UGent) , Bekzod Khakimov, Jean-Etienne Bassard, Karel Miettinen (UGent) , Dan Stærk, Rahimi Mehran, Carl Erik Olsen, Mohammed Saddik Motawia, et al.

(2021) MOLECULAR BIOLOGY AND EVOLUTION.
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Interactions between soil compositions and the wheat root microbiome under drought stress : from an in silico to in planta perspective

Jiyeon Si, Emilie froussart (UGent) , Tom Viaene, Jorge F. Vázquez-Castellanos, Kelly Hamonts, Lin Tang, Stien Beirinckx (UGent) , Annick De Keyser (UGent) , Tibby Deckers, Fien Amery, et al.

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.4235-4247
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Local regulation of auxin transport in root-apex transition zone mediates aluminium-induced Arabidopsis root-growth inhibition

Cuiling Li, Guangchao Liu, Xiaoyu Geng, Chunmei He, Taiyong Quan, Ken‐ichiro Hayashi, Ive De Smet (UGent) , Hélène S. Robert, Zhaojun Ding and Zhong‐Bao Yang

(2021) PLANT JOURNAL.
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Review of diffusion-weighted imaging and dynamic contrast–enhanced MRI for multiple myeloma and its precursors (monoclonal gammopathy of undetermined significance and smouldering myeloma)

Thomas Van Den Berghe (UGent) , Koenraad Verstraete (UGent) , Frédéric E. Lecouvet, Maryse Lejoly (UGent) and Julie Dutoit (UGent)

(2021) Skeletal Radiology.
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Exploration of GH94 sequence space for enzyme discovery reveals a novel glucosylgalactose phosphorylase specificity

Marc De Doncker (UGent) , Chloé De Graeve, Jorick Franceus (UGent) , Koen Beerens (UGent) , Vladimír Křen, Helena Pelantová, Ronny Vercauteren and Tom Desmet (UGent)

(2021) CHEMBIOCHEM.
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Structure-function relationships in NDP-sugar active SDR enzymes : fingerprints for functional annotation and enzyme engineering

Koen Beerens (UGent)

(2021) ProtStab2021, 13th International Conference on Protein Stabilization, Abstracts.
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Discovery of a novel GDP-glucose 4-epimerase in archaea reveals an uncommon promiscuity

Carlos Alvarez Quispe (UGent) , Matthieu Da Costa (UGent) , Koen Beerens (UGent) and Tom Desmet (UGent)

(2021) ProtStab2021, 13th International Conference on Protein Stabilization, Abstracts.
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Carnosine and skeletal muscle dysfunction in a rodent multiple sclerosis model

Jan Spaas (UGent) , Pieter Van Noten, Charly Keytsman, Ine Nieste, Laura Blancquaert (UGent) , Wim Derave (UGent) and Bert O. Eijnde

(2021) Amino Acids.
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Identification of Novel Rotihibin Analogues in Streptomyces scabies , Including Discovery of Its Biosynthetic Gene Cluster

Sören Planckaert (UGent) , Benoit Deflandre, Anne-Mare de Vries (UGent) , Maarten Ameye (UGent) , José Martins (UGent) , Kris Audenaert (UGent) , Sébastien Rigali and Bart Devreese (UGent)

(2021) Microbiology Spectrum.
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More is less : mass-flowering fruit tree crops dilute parasite transmission between bees

Niels Piot (UGent) , Maxime Eeraerts, Matti Pisman (UGent) , Gregor Claus (UGent) , Ivan Meeus (UGent) and Guy Smagghe (UGent)

(2021) INTERNATIONAL JOURNAL FOR PARASITOLOGY. 51(9). p.777-785
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Efficacy and biosafety assessment of neuropeptide CAPA analogues against the peach-potato aphid (Myzus persicae)

Yan Shi, Ronald J. Nachman, Shunhua Gui (UGent) , Niels Piot (UGent) , Krzysztof Kaczmarek, Janusz Zabrocki, Julian A. T. Dow, Shireen‐A. Davies and Guy Smagghe (UGent)

(2021) INSECT SCIENCE.
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Tomato domestication affects potential functional molecular pathways of root-associated soil bacteria

Lisanne Smulders, Emilio Benítez, Beatriz Moreno, Álvaro López-García, María J. Pozo, Victoria Ferrero, Eduardo de la Pena (UGent) and Rafael Alcalá Herrera

(2021) PLANTS-BASEL. 10(9).
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Field evaluation of cypermethrin, imidacloprid, teflubenzuron and emamectin benzoate against pests of quinoa (Chenopodium quinoa willd.) and their side effects on non-target species

Luis Miguel Cruces (UGent) , Eduardo de la Pena (UGent) and Patrick De Clercq (UGent)

(2021) PLANTS-BASEL. 10(9).
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Revisiting metric sex estimation of burnt human remains via supervised learning using a reference collection of modern identified cremated individuals (Knoxville, USA)

Marta Hlad, Barbara Veselka, Dawnie Wolfe Steadman, Baptiste Herregods, Marc Elskens, Rica Annaert, Mathieu Boudin, Giacomo Capuzzo, Sarah Dalle (UGent) , Guy De Mulder (UGent) , et al.

(2021) AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY.
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The role of detoxification enzymes in the susceptibility of Brevipalpus californicus exposed to acaricide and insecticide mixtures

Jaqueline Della Vechia, Thomas Van Leeuwen (UGent) , Guilherme D. Rossi and Daniel J. Andrade

(2021) PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY. 175.
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High-resolution genetic mapping reveals cis-regulatory and copy number variation in loci associated with cytochrome P450-mediated detoxification in a generalist arthropod pest

Seyedeh Masoumeh Fotoukkiaii, Nicky Wybouw (UGent) , Andre Kurlovs (UGent) , Dimitra Tsakireli, Spiros A. Pergantis, Richard M. Clark, John Vontas and Thomas Van Leeuwen (UGent)

(2021) PLOS GENETICS. 17(6).
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Phylogeny and mycotoxin profile of pathogenic Fusarium species isolated from sudden decline syndrome and leaf wilt symptoms on date palms (Phoenix dactylifera) in Tunisia

Amal Rabaaoui (UGent) , Chiara Dall’Asta, Laura Righetti, Antonia Susca, Antonio Francesco Logrieco, Ahmed Namsi, Radhouane Gdoura, Stefaan Werbrouck (UGent) , Antonio Moretti and Mario Masiello

(2021) TOXINS. 13(7).
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Impact of phenolic compound as activators or inhibitors on the enzymatic hydrolysis of cellulose

Ioanna Stamogiannou (UGent) , John Van Camp (UGent) , Guy Smagghe (UGent) , Davy Van de Walle (UGent) , Koen Dewettinck (UGent) and Katleen Raes (UGent)

(2021) INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES. 186. p.174-180
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Adaptive divergence and post-zygotic barriers to gene flow between sympatric populations of a herbivorous mite

Ernesto Villacis Perez (UGent) , Simon Snoeck, Andre Kurlovs (UGent) , Richard M. Clark, Johannes A. J. Breeuwer and Thomas Van Leeuwen (UGent)

(2021) COMMUNICATIONS BIOLOGY. 4(1).
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Lrp5 mutant and crispant zebrafish faithfully model human osteoporosis, establishing the zebrafish as a platform for CRISPR‐based functional screening of osteoporosis candidate genes

Jan Willem Bek (UGent) , Chen Shochat, Adelbert De Clercq (UGent) , Hanna De Saffel (UGent) , Annekatrien Boel (UGent) , Juriaan Metz, Frans Rodenburg, David Karasik, Andy Willaert (UGent) and Paul Coucke (UGent)

(2021) JOURNAL OF BONE AND MINERAL RESEARCH.
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Efferocytosis by Paneth cells within the intestine

Laura S. Shankman, Samantha T. Fleury, W. Britt Evans, Kristen K. Penberthy, Sanja Arandjelovic, Richard S. Blumberg, Herve Agaisse and Kodi Ravichandran (UGent)

(2021) CURRENT BIOLOGY. 31(11). p.2469-2476
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- PhD Thesis
Application of hydrogen-oxidizing bacteria for nutrient remediation and nutrient recovery

Raquel G. Barbosa (UGent)

(2021)
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DNA-SIP and repeated isolation corroborate Variovorax as a key organism in maintaining the genetic memory for linuron biodegradation in an agricultural soil

Harry Lerner, Basak Ozturk, Anja B. Dohrmann, Joice Thomas, Kathleen Marchal (UGent) , Rene De Mot, Wim Dehaen, Christoph C. Tebbe and Dirk Springael

(2021) FEMS MICROBIOLOGY ECOLOGY. 97(5).
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The RNA Atlas expands the catalog of human non-coding RNAs

Lucia Lorenzi (UGent) , Hua-Sheng Chiu, Francisco Avila Cobos (UGent) , Stephen Gross, Pieter-Jan Volders (UGent) , Robrecht Cannoodt (UGent) , Justine Nuytens (UGent) , Katrien Vanderheyden (UGent) , Jasper Anckaert (UGent) , Steve Lefever (UGent) , et al.

(2021) NATURE BIOTECHNOLOGY.
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Loss of zebrafish atp6v1e1b, encoding a subunit of vacuolar ATPase, recapitulates human ARCL type 2C syndrome and identifies multiple pathobiological signatures

Lore Pottie (UGent) , Wouter Van Gool (UGent) , Michiel Vanhooydonck (UGent) , Franz-Georg Hanisch, Geert Goeminne (UGent) , Andreja Rajkovic (UGent) , Paul Coucke (UGent) , Patrick Sips (UGent) and Bert Callewaert (UGent)

(2021) PLOS GENETICS. 17(6).
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- PhD Thesis
Effects of natural processes and human activity on North Sea sediment biogeochemistry

Emil De Borger (UGent)

(2021)
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Oases in a world without sun : biological drivers of cold-water coral reefs

Sandra Maier (UGent)

(2021)
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Past and present phytoplankton communities in East-African crater lakes : paleolimnology and biomonitoring

Heidi Tanttu (UGent)

(2021)
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Thermophysiology and the thermal effects of feather coloration

Svana Rogalla (UGent)

(2021)
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The role of lianas for the structure and function of tropical rainforests of the Congo basin

Francis Mumbanza Mundondo (UGent)

(2021)
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Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Razgar Seyed Rahmani (UGent) , Tao Shi, Dongzhi Zhang, Xiaoping Gou, Jing Yi, Giles Miclotte (UGent) , Kathleen Marchal (UGent) and Jia Li

(2021) BMC GENOMICS. 22(1).
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Root-associated bacterial community shifts in hydroponic lettuce cultured with urine-derived fertilizer

Thijs Van Gerrewey (UGent) , Christophe El Nakhel, Stefania De Pascale, Jolien De Paepe (UGent) , Peter Clauwaert (UGent) , Frederiek-Maarten Kerckhof (UGent) , Nico Boon (UGent) and Danny Geelen (UGent)

(2021) MICROORGANISMS. 9(6).
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The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts

Tao Wan, Zhiming Liu, Ilia J. Leitch, Haiping Xin, Gillian Maggs-Kölling, Yanbing Gong, Zhen Li (UGent) , Eugene Marais, Yiying Liao, Can Dai, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- PhD Thesis
Exploring knockout strategies at the protein level in plants

Joanna Winkler (UGent)

(2021)
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Locomotor activity in Branchipus schaeﬀeri (Fischer, 1834) (Branchiopoda: Anostraca) under thermal variation

Behrooz Atashbar, Naser Agh, Johan Mertens (UGent) and Lynda Beladjal (UGent)

(2021) NAUPLIUS. 29.
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The heat is on : how crop growth, development, and yield respond to high temperature

Tingting Zhu (UGent) , Cássio Flávio Fonseca de Lima (UGent) and Ive De Smet (UGent)

(2021) JOURNAL OF EXPERIMENTAL BOTANY.
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The Arabidopsis root tip (phospho)proteomes at growth-promoting versus growth-repressing conditions reveal novel root growth regulators

Natalia Nikonorova, Evan Murphy, Cássio Flávio Fonseca de Lima (UGent) , Shanshuo Zhu, Brigitte Van De Cotte (UGent) , Lam Dai Vu (UGent) , Daria Balcerowicz, Lanxin Li, Xiangpei Kong, Gieljan De Rop, et al.

(2021) CELLS. 10(7).
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- PhD Thesis
Pseudomonas cyclic lipopeptides as cytotoxic agents for cancer cells : structure-function analysis

Yentl Verleysen (UGent)

(2021)
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- Journal Article
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Digital polymerase chain reaction for assessment of mutant mitochondrial carry-over after nuclear transfer for In Vitro fertilization

Olivier Tytgat (UGent) , MX Tang, Willem van Snippenberg (UGent) , Annekatrien Boel (UGent) , RR Guggilla, Yannick Gansemans (UGent) , Michiel Van Herp (UGent) , Sofie Symoens (UGent) , Wim Trypsteen (UGent) , Dieter Deforce (UGent) , et al.

(2021) CLINICAL CHEMISTRY. 67(7). p.968-976
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Development of a 3':5' digital PCR assay to determine horse mRNA integrity

Charis Du Cheyne (UGent) , Yao Chen (UGent) , Jurgen De Craene (UGent) , Olivier Thas (UGent) and Ward De Spiegelaere (UGent)

(2021) ANALYTICAL BIOCHEMISTRY. 626.
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TRAPID 2.0 : a web application for taxonomic and functional analysis of de novo transcriptomes

François Bucchini (UGent) , Andrea Del Cortona, Łukasz Kreft, Alexander Botzki, Michiel Van Bel and Klaas Vandepoele (UGent)

(2021) NUCLEIC ACIDS RESEARCH. 49(17).
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Efficient long-range conduction in cable bacteria through nickel protein wires

Henricus T. S. Boschker, Perran L. M. Cook, Lubos Polerecky, Raghavendran Thiruvallur Eachambadi, Helena Lozano, Silvia Hidalgo-Martinez, Dmitry Khalenkow (UGent) , Valentina Spampinato, Nathalie Claes, Paromita Kundu, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- A2
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A short story of nearly everything in Lactifluus (Russulaceae)

Eske De Crop (UGent) , Lynn Delgat (UGent) , Jorinde Nuytinck (UGent) , R.E. Halling and Annemieke Verbeken (UGent)

(2021) FUNGAL SYSTEMATICS AND EVOLUTION. 7(1). p.133-164
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Fungal systematics and evolution : FUSE 7

Bálint Dima, Tor Erik Brandrud, Gilles Corriol, Gerrit Maarten Jansen, John Bjarne Jordal, Abdul N. Khalid, Ellen Larsson, Jostein Lorås, Olga V. Morozova, Arooj Naseer, et al.

(2021) SYDOWIA. 73. p.271-340
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Laboulbeniomycetes : intimate fungal associates of arthropods

Danny Haelewaters (UGent) , Meredith Blackwell and Donald H. Pfister

(2021) ANNUAL REVIEW OF ENTOMOLOGY. 66. p.257-276
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Laboulbeniomycetes, enigmatic fungi with a turbulent taxonomic history

Danny Haelewaters (UGent) , Michał Gorczak, Patricia Kaishian, André De Kesel and Meredith Blackwell

(2021) Encyclopedia of mycology. In Encyclopedia of Mycology 1. p.263-283
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- Book Chapter
Phylogenetic advances in Leotiomycetes, an understudied clade of taxonomically and ecologically diverse fungi

C. Alisha Quandt and Danny Haelewaters (UGent)

(2021) Encyclopedia of mycology. In Encyclopedia of Mycology 1. p.284-294
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Three independent evolutionary events of sequestrate Lactifluus species in Australasia

T. Lebel, J. A. Cooper, M. A. Castellano and Jorinde Nuytinck (UGent)

(2021) FUNGAL SYSTEMATICS AND EVOLUTION. 8. p.9-25
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The impact of the fungus-host-microbiota interplay upon Candida albicans infections : current knowledge and new perspectives

Christophe d'Enfert, Ann-Kristin Kaune, Leovigildo-Rey Alaban, Sayoni Chakraborty, Nathaniel Cole, Margot Delavy, Daria Kosmala, Benoit Marsaux (UGent) , Ricardo Frois-Martins, Moran Morelli, et al.

(2021) FEMS MICROBIOLOGY REVIEWS. 45(3).
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Genomic aromatic compound degradation potential of novel Paraburkholderia species : Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov.

Sarah Vanwijnsberghe (UGent) , Charlotte Peeters (UGent) , Emmelie De Ridder (UGent) , Charles Dumolin (UGent) , Anneleen Wieme (UGent) , Nico Boon (UGent) and Peter Vandamme (UGent)

(2021) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 22(13).
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Elective egg freezing and women's emancipation

Guido Pennings (UGent)

(2021) REPRODUCTIVE BIOMEDICINE ONLINE. 42(6). p.1053-1055
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Hepatic macrophage responses in inflammation, a function of plasticity, heterogeneity or both?

Christian Zwicker (UGent) , Anna Bujko (UGent) and Charlotte Scott (UGent)

(2021) FRONTIERS IN IMMUNOLOGY. 12.
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Spearheading future omics analyses using dyngen, a multi-modal simulator of single cells

Robrecht Cannoodt (UGent) , Wouter Saelens, Louise Deconinck (UGent) and Yvan Saeys (UGent)

(2021) NATURE COMMUNICATIONS. 12(1).
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New paradigm in NKT cell antigens : MCS-0208 (2-(hydroxymethyl)phenylthio-phytoceramide) - an aryl-phytoceramide compound with a single hydroxyl group stimulates NKT cells

Roser Borras-Tuduri, Anna Alcaide, SANDRINE ASPESLAGH (UGent) , Lorena Usero, Carmen Serra, Carme Roura-Mir, Dirk Elewaut (UGent) and Amadeu Llebaria

(2021) CHEMMEDCHEM.
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Bidirectional crosstalk between hypoxia inducible factors and glucocorticoid signalling in health and disease

Tineke Vanderhaeghen (UGent) , Rudi Beyaert (UGent) and Claude Libert (UGent)

(2021) FRONTIERS IN IMMUNOLOGY. 12.
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Structural changes in the sacroiliac joint on MRI and relationship to ASDAS inactive disease in axial spondyloarthritis : a 2-year study comparing treatment with etanercept in EMBARK to a contemporary control cohort in DESIR

Walter P. Maksymowych, Pascal Claudepierre, Manouk de Hooge (UGent) , Robert G. Lambert, Robert Landewé, Anna Molto, Désirée van der Heijde, Jack F. Bukowski, Heather Jones, Ron Pedersen, et al.

(2021) ARTHRITIS RESEARCH & THERAPY. 23(1).
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Data processing workflow for large-scale immune monitoring studies by mass cytometry

Paulina Rybakowska, Sofie Van Gassen (UGent) , Katrien Quintelier (UGent) , Yvan Saeys (UGent) , Marta E. Alarcón-Riquelme and Concepción Marañón

(2021) COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. 19. p.3160-3175
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Inflammasome activation in ankylosing spondylitis is associated with gut dysbiosis

Giuliana Guggino, Daniele Mauro, Aroldo Rizzo, Riccardo Alessandro, Stefania Raimondo, Anne‐Sophie Bergot, M. Arifur Rahman, Jonathan J. Ellis, Simon Milling, Rik Lories, et al.

(2021) ARTHRITIS & RHEUMATOLOGY. 73(7). p.1189-1199
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PhaLP : a database for the study of phage lytic proteins and their evolution

Bjorn Criel (UGent) , Steff Taelman (UGent) , Wim Van Criekinge (UGent) , Michiel Stock (UGent) and Yves Briers (UGent)

(2021) VIRUSES-BASEL. 13(7).
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RNAi of the N-glycosylation-related genes confirms their importance in insect development and alpha-1,6-fucosyltransferase plays a role in the ecdysis event for the hemimetabolous pest insect Nilaparvata lugens

Qun Yang (UGent) , Kristof De Schutter (UGent) , Pengyu Chen (UGent) , Els Van Damme (UGent) and Guy Smagghe (UGent)

(2021) INSECT SCIENCE.
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Ratio-dependent functional response of two common Cladocera present in farmland ponds to Batrachochytrium dendrobatidis

Niels De Troyer (UGent) , Stijn Bruneel (UGent) , Koen Lock (UGent) , Mark Greener, Ennio Facq, Arne Deknock (UGent) , An Martel (UGent) , Frank Pasmans (UGent) and Peter Goethals (UGent)

(2021) FUNGAL ECOLOGY. 53.
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- PhD Thesis
Immune responses induced by the plant lectin Orysata in insect cells

Pengyu Chen (UGent)

(2021)
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Edible mycorrhizal fungi of the world : what is their role in forest sustainability, food security, biocultural conservation and climate change?

Jesus Perez-Moreno, Alexis Guerin-Laguette, Andrea C. Rinaldi, Fuqiang Yu, Annemieke Verbeken (UGent) , Faustino Hernandez-Santiago and Magdalena Martinez-Reyes

(2021) PLANTS PEOPLE PLANET.
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- PhD Thesis
Isolation of root endophytic bacteria and characterization of their interactions with plant secondary metabolites : focus on Alkanna tinctoria and Lithospermum officinale

Angélique Rat (UGent)

(2021)

Advancing root developmental research through single-cell technologies

Engineering of yeast glycoprotein expression

Mimicking early host-Batrachochytrium salamandrivorans interactions using in vitro-infection models

Effects of two types of calorie restriction on methylation levels of adiponectin receptor 1 (AdipoR1) and leptin receptor overlapping transcript (Leprot) in a MMTV-TGF-α breast cancer mouse model

RyR2 regulates Cx43 hemichannel intracellular Ca2+-dependent activation in cardiomyocytes

Bioactivity screening of hydrolysates from brown crab processing side streams fermented by marine Pseudoalteromonas strains

Photoconvertible fluorescent proteins : a versatile tool in zebrafish skeletal imaging

Mass spectrometry-based clinical proteomics : a revival

Binding of Orysata lectin induces an immune response in insect cells

Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models

Exploring RNA signatures in human biofluids as novel liquid biopsy tool

Cyclin D2 overexpression drives B1a-derived MCL-like lymphoma in mice

The ever-expanding Pseudomonas genus : description of 43 new species and partition of the Pseudomonas putida group

Human exposure and potential health effects of marine compounds in sea spray aerosols

Myotypes : the relevance of muscle fiber typology in sports

Gelatin‐based versus alginate‐based hydrogels : providing insight in wound healing potential

Seminar: The Quest for Deus Ex Machina: Harnessing the Power of Machine Learning for Synthetic Biology

Development and validation of liquid chromatography-tandem mass spectrometry methods for the quantification of cefquinome, ceftiofur, and desfuroylceftiofuracetamide in porcine feces with emphasis on analyte stability

Protein kinase and phosphatase control of plant temperature responses

Nature and nurture : genotype-dependent differential responses of root architecture to agar and soil environments

Profiling of extracellular small RNAs highlights a strong bias towards non-vesicular secretion

High-resolution X-ray computed tomography : a new workflow for the analysis of xylogenesis and intra-seasonal wood biomass production

Analyzing high-dimensional cytometry data using FlowSOM

Monocyte-driven atypical cytokine storm and aberrant neutrophil activation as key mediators of COVID-19 disease severity

A bacterial mixed culture is capable of degrading the mycotoxin deoxynivalenol into a metabolite, which still has a high toxic effect towards eukaryotic cells

Bacterial enrichment cultures biotransform the mycotoxin deoxynivalenol into a novel metabolite toxic to plant and porcine cells

A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root

Spectral prediction features as a solution for the search space size problem in proteogenomics

Cyperus prophyllatus : an endangered aquatic new species of Cyperus L. (Cyperaceae) with a exceptional spikelet disarticulation pattern among about 950 species, including molecular phylogenetic, anatomical and (micro)morphological data

A reflux-and-growth mechanism explains oscillatory patterning of lateral root branching sites

Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation

The 5-formyl-tetrahydrofolate proteome links folates with C/N metabolism and reveals feedback regulation of folate biosynthesis

In-depth single-cell analysis of translation-competent HIV-1 reservoirs identifies cellular sources of residual viremia and rebound viruses

CkP1 is a novel S16-like broad-host-range myovirus that recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres

Periodic root branching is influenced by light through an HY1-HY5-auxin pathway

CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2 modulates auxin homeostasis and signaling

An independent evolutionary origin for insect deterrent cucurbitacins in Iberis amara

Interactions between soil compositions and the wheat root microbiome under drought stress : from an in silico to in planta perspective

Local regulation of auxin transport in root-apex transition zone mediates aluminium-induced Arabidopsis root-growth inhibition

Review of diffusion-weighted imaging and dynamic contrast–enhanced MRI for multiple myeloma and its precursors (monoclonal gammopathy of undetermined significance and smouldering myeloma)

Exploration of GH94 sequence space for enzyme discovery reveals a novel glucosylgalactose phosphorylase specificity

Structure-function relationships in NDP-sugar active SDR enzymes : fingerprints for functional annotation and enzyme engineering

Discovery of a novel GDP-glucose 4-epimerase in archaea reveals an uncommon promiscuity

Carnosine and skeletal muscle dysfunction in a rodent multiple sclerosis model

Identification of Novel Rotihibin Analogues in Streptomyces scabies , Including Discovery of Its Biosynthetic Gene Cluster

More is less : mass-flowering fruit tree crops dilute parasite transmission between bees

Efficacy and biosafety assessment of neuropeptide CAPA analogues against the peach-potato aphid (Myzus persicae)

Tomato domestication affects potential functional molecular pathways of root-associated soil bacteria

Field evaluation of cypermethrin, imidacloprid, teflubenzuron and emamectin benzoate against pests of quinoa (Chenopodium quinoa willd.) and their side effects on non-target species

Revisiting metric sex estimation of burnt human remains via supervised learning using a reference collection of modern identified cremated individuals (Knoxville, USA)

The role of detoxification enzymes in the susceptibility of Brevipalpus californicus exposed to acaricide and insecticide mixtures

High-resolution genetic mapping reveals cis-regulatory and copy number variation in loci associated with cytochrome P450-mediated detoxification in a generalist arthropod pest

Phylogeny and mycotoxin profile of pathogenic Fusarium species isolated from sudden decline syndrome and leaf wilt symptoms on date palms (Phoenix dactylifera) in Tunisia

Impact of phenolic compound as activators or inhibitors on the enzymatic hydrolysis of cellulose

Adaptive divergence and post-zygotic barriers to gene flow between sympatric populations of a herbivorous mite

Lrp5 mutant and crispant zebrafish faithfully model human osteoporosis, establishing the zebrafish as a platform for CRISPR‐based functional screening of osteoporosis candidate genes

Efferocytosis by Paneth cells within the intestine

Application of hydrogen-oxidizing bacteria for nutrient remediation and nutrient recovery

DNA-SIP and repeated isolation corroborate Variovorax as a key organism in maintaining the genetic memory for linuron biodegradation in an agricultural soil

The RNA Atlas expands the catalog of human non-coding RNAs

Loss of zebrafish atp6v1e1b, encoding a subunit of vacuolar ATPase, recapitulates human ARCL type 2C syndrome and identifies multiple pathobiological signatures

Effects of natural processes and human activity on North Sea sediment biogeochemistry

Oases in a world without sun : biological drivers of cold-water coral reefs

Past and present phytoplankton communities in East-African crater lakes : paleolimnology and biomonitoring

Thermophysiology and the thermal effects of feather coloration

The role of lianas for the structure and function of tropical rainforests of the Congo basin

Genome-wide expression and network analyses of mutants in key brassinosteroid signaling genes

Root-associated bacterial community shifts in hydroponic lettuce cultured with urine-derived fertilizer

The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts

Exploring knockout strategies at the protein level in plants

Locomotor activity in Branchipus schaeﬀeri (Fischer, 1834) (Branchiopoda: Anostraca) under thermal variation

The heat is on : how crop growth, development, and yield respond to high temperature

The Arabidopsis root tip (phospho)proteomes at growth-promoting versus growth-repressing conditions reveal novel root growth regulators

Pseudomonas cyclic lipopeptides as cytotoxic agents for cancer cells : structure-function analysis

Digital polymerase chain reaction for assessment of mutant mitochondrial carry-over after nuclear transfer for In Vitro fertilization

Development of a 3':5' digital PCR assay to determine horse mRNA integrity

TRAPID 2.0 : a web application for taxonomic and functional analysis of de novo transcriptomes

Efficient long-range conduction in cable bacteria through nickel protein wires

A short story of nearly everything in Lactifluus (Russulaceae)

Fungal systematics and evolution : FUSE 7