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brainlife.io : a decentralized and open-source cloud platform to support neuroscience research
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Circular RNA detection pipelines yield divergent sets of circular RNAs
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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
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- Journal Article
- A1
- open access
Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition
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- Journal Article
- A1
- open access
MISpheroID : a knowledgebase and transparency tool for minimum information in spheroid identity
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- Journal Article
- A1
- open access
Universal Spectrum Identifier for mass spectra
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The power of imaging to understand extracellular vesicle biology in vivo
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- Journal Article
- A1
- open access
DeepLC can predict retention times for peptides that carry as-yet unseen modifications
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NicheNet : modeling intercellular communication by linking ligands to target genes
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Mass spectrometrists should search for all peptides, but assess only the ones they care about
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Human T cell development notched up a level
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EV-TRACK : transparent reporting and centralizing knowledge in extracellular vesicle research
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moFF : a robust and automated approach to extract peptide ion intensities
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Precisely and accurately localizing single emitters in fluorescence microscopy
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Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study
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The need for transparency and good practices in the qPCR literature
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Wisdom of crowds for robust gene network inference
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ORCAE: online resource for community annotation of eukaryotes
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Combining quantitative proteomics data processing workflows for greater sensitivity
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Complementary positional proteomics for screening substrates of endo- and exoproteases
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A HUPO test sample study reveals common problems in mass spectrometry-based proteomics
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Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network
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Improved visualization of protein consensus sequences by iceLogo
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An empirical framework for binary interactome mapping
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An experimentally derived confidence score for binary protein-protein interactions
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Modeling lymphangiogenesis in a three-dimensional culture system
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Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping
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Single protein complex visualization: Seeing is believing
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Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
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A new method for C-terminal sequence analysis in the proteomic era
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Reverse MAPPIT: screening for protein-protein interaction modifiers in mammalian cells