Ghent University Academic Bibliography

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- Journal Article
Aspergillus Fumigatus Spore Proteases Alter the Respiratory Mucosa Architecture and Facilitate Equine Herpesvirus 1 Infection

Joren Portaels (UGent) , Eline Van Crombrugge (UGent) , Wim Van Den Broeck (UGent) , Katrien Lagrou, Kathlyn Laval (UGent) and Hans Nauwynck (UGent)

(2024) VIRUSES-BASEL. 16(8).
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- Journal Article
- A1
- open access
A phloem‐localized Arabidopsis metacaspase (AtMC3) improves drought tolerance

Eugenia Pitsili (UGent) , Ricardo Rodriguez‐Trevino, Nerea Ruiz‐Solani, Fatih Demir, Elizabeth Kastanaki, Charlene Dambire, Roger de Pedro‐Jové, Dominique Vercammen, Jose Salguero‐Linares, Hardy Hall, et al.

(2023) NEW PHYTOLOGIST. 239(4). p.1281-1299
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- Book Chapter
Increasing the overall proteome coverage by combining protein digestion by Tryp-N and trypsin

Jade Hawksworth (UGent) , Lode Denolf (UGent) , Evy Timmerman (UGent) and Kris Gevaert (UGent)

(2023) Mass spectrometry-based proteomics. In Methods in Molecular Biology 2718. p.1-10
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- Book Editor
Mass spectrometry-based proteomics

Kris Gevaert (UGent)

(2023) In Methods in molecular biology (MIMB) 2718.
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- Journal Article
- A1
- open access
Neutrophils affect IL-33 processing in response to the respiratory allergen Alternaria alternata

Sharon Van Nevel (UGent) , Judith van Ovost (UGent) , Gabriële Holtappels (UGent) , Natalie De Ruyck (UGent) , Nan Zhang (UGent) , Harald Braun (UGent) , Tania Maes (UGent) , Claus Bachert (UGent) and Olga Krysko (UGent)

(2021) FRONTIERS IN IMMUNOLOGY. 12.
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- Journal Article
- A1
Synthesis of novel nitroxoline analogs with potent cathepsin B exopeptidase inhibitory activity

Tim Van de Walle, Marina Briand, Ana Mitrović, Izidor Sosič, Stanislav Gobec, Janko Kos, Leentje Persoons, Dirk Daelemans, Steven De Jonghe, Zorica Ubiparip, et al.

(2020) CHEMMEDCHEM. 15(24). p.2477-2490
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- Miscellaneous
- open access
Plant proteases and programmed cell death

Simon Stael (UGent) , Frank Van Breusegem (UGent) , Kris Gevaert (UGent) and Moritz Nowack (UGent)

(2019) JOURNAL OF EXPERIMENTAL BOTANY. 70(7). p.1991-1995
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- Journal Article
- A1
- open access
Self-incompatibility in Papaver pollen : programmed cell death in an acidic environment

Ludi Wang, Zongcheng Lin (UGent) , Marina Muñoz Triviño (UGent) , Moritz Nowack (UGent) , Vernonica E. Franklin-Tong and Maurice Bosch

(2019) JOURNAL OF EXPERIMENTAL BOTANY. 70(7). p.2113-2123
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- Journal Article
- A1
Dietary shifts have consequences for the repertoire of allergens produced by the European house dust mite

JC Vidal-Quist, F Ortego, Stephane Rombauts (UGent) , P Castanera and P Hernandez-Crespo

(2017) MEDICAL AND VETERINARY ENTOMOLOGY. 31(3). p.272-280
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- Journal Article
- A1
Doping control container for urine stabilization : a pilot study

Maria Tsivou, Evangelia Giannadaki, Fiona Hooghe (UGent) , Kris Roels (UGent) , Wim Van Gansbeke (UGent) , Flaminia Garribba, Emmanouil Lyris, Koen Deventer (UGent) , Monica Mazzarino, Francesco Donati, et al.

(2017) DRUG TESTING AND ANALYSIS. 9(5). p.699-712
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- Journal Article
- A1
MALT1-a universal soldier: multiple strategies to ensure NF-κB activation and target gene expression

Inna Afonina (UGent) , Lynn Elton (UGent) , Isabelle Carpentier (UGent) and Rudi Beyaert (UGent)

(2015) FEBS JOURNAL. 282(17). p.3286-3297
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- Journal Article
- A1
Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacterium Synechocystis sp PCC 6803

Lam X Tam, Harald Aigner, Evy Timmerman (UGent) , Kris Gevaert (UGent) and Christiane Funk

(2015) BIOCHEMICAL JOURNAL. 468(3). p.373-384
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- Book Chapter
Other funtional additives

Ingrid De Leyn (UGent)

(2014) Bakery products : science and technology. p.295-306
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- Journal Article
- A1
Increasing recombinant protein production in Escherichia coli K12 through metabolic engineering

Hendrik Waegeman (UGent) , Stijn De Lausnay (UGent) , Joeri Beauprez, Jo Maertens (UGent) , Marjan De Mey (UGent) and Wim Soetaert (UGent)

(2013) NEW BIOTECHNOLOGY. 30(2). p.255-261
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- Journal Article
- A1
- open access
The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

Niklaas Colaert (UGent) , Davy Maddelein (UGent) , Francis Impens (UGent) , Petra Van Damme (UGent) , Kim Plasman (UGent) , Kenny Helsens (UGent) , Niels Hulstaert (UGent) , Joël Vandekerckhove (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2013) NUCLEIC ACIDS RESEARCH. 41(D1). p.D333-D337
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- Journal Article
- A1
- open access
In vitro metabolic stability of iodinated obestatin peptides

Bart De Spiegeleer (UGent) , Sylvia Van Dorpe (UGent) , Valentijn Vergote (UGent) , Evelien Wynendaele (UGent) , Ewald Pauwels (UGent) , Christophe Van De Wiele (UGent) , Pablo Garcia-Solis and Juan Carlos Solis-Sainz

(2012) PEPTIDES. 33(2). p.272-278
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- Miscellaneous
The first MMP in sepsis

Roosmarijn Vandenbroucke (UGent) , Lien Dejager (UGent) and Claude Libert (UGent)

(2011) EMBO MOLECULAR MEDICINE. 3(7). p.367-369
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- Journal Article
- A1
- open access
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

Queenie WT Chan, R Scott Cornman, Inanc Birol, Nancy Y Liao, Simon K Chan, T Roderick Docking, Shaun D Jackman, Greg A Taylor, Steven JM Jones, Dirk de Graaf (UGent) , et al.

(2011) BMC GENOMICS. 12.
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- Journal Article
- A1
- open access
Influence of storage conditions on the growth of Pseudomonas species in refrigerated raw milk

Valerie De Jonghe, An Coorevits (UGent) , Koenraad Van Hoorde (UGent) , Winy Messens (UGent) , Anita Van Landschoot (UGent) , Paul De Vos (UGent) and Marc Heyndrickx (UGent)

(2011) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 77(2). p.460-470
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- PhD Thesis
Studying in vitro and in vivo protease processing in models of cancer cell death and viral infection by N-terminal COFRADIC

Francis Impens (UGent)

(2010)
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- Journal Article
- A1
- open access
Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression

Heleen Nailis (UGent) , Soňa Kucharíková, Markéta Řičicová, Patrick Van Dijck, Dieter Deforce (UGent) , Hans Nelis (UGent) and Tom Coenye (UGent)

(2010) BMC MICROBIOLOGY. 10.
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- Journal Article
- A1
Receptor-mediated targeting of cathepsins in professional antigen presenting cells

Wrik Hillaert, Martijn Verdoes, Bogdan I Florea, Athanasios Saragliadis, Kim LL Habets, Johan Kuiper, Serge Van Calenbergh (UGent) , Ferry Ossendorp, Gijsbrecht A van der Marel, Christoph Driessen, et al.

(2009) ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 48(9). p.1629-1632
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- Journal Article
- A1
SitePredicting the cleavage of proteinase substrates

Jelle Verspurten (UGent) , Kris Gevaert (UGent) , Wim Declercq (UGent) and Peter Vandenabeele (UGent)

(2009) TRENDS IN BIOCHEMICAL SCIENCES. 34(7). p.319-323
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- Book Chapter
- open access
Protein processing characterized by a gel-free proteomics approach

Petra Van Damme (UGent) , Francis Impens (UGent) , Joël Vandekerckhove (UGent) and Kris Gevaert (UGent)

(2008) Functional proteomics, part III. 484. p.245-262
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- Journal Article
- A1
- open access
Are metacaspases caspases?

Dominique Vercammen, Wim Declercq (UGent) , Peter Vandenabeele (UGent) and Frank Van Breusegem (UGent)

(2007) JOURNAL OF CELL BIOLOGY. 179(3). p.375-380
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- Journal Article
- A1
Polymorphonuclear neutrophils and Escherichia coli proteases involved in proteolysis of casein during experimental E-coli mastitis

K HADDADI, C PRIN-MATHIEU, F MOUSSAOUI, GC FAURE, Frédéric Vangroenweghe (UGent) , Christian Paul G. Burvenich (UGent) and Y LE ROUX

(2006) INTERNATIONAL DAIRY JOURNAL. 16(6). p.639-647
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- Journal Article
- A1
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis

Petra Van Damme (UGent) , Lennart Martens (UGent) , Jozef Van Damme (UGent) , Koen Hugelier, An Staes (UGent) , Joël Vandekerckhove (UGent) and Kris Gevaert (UGent)

(2005) NATURE METHODS. 2(10). p.771-777
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- Journal Article
- A1
Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine

Dominique Vercammen, Brigitte Van De Cotte (UGent) , Geert De Jaeger (UGent) , Dominique Eeckhout (UGent) , Peter Casteels (UGent) , Klaas Vandepoele (UGent) , Isabel Vandenberghe (UGent) , Jozef Van Beeumen (UGent) , Dirk Inzé (UGent) and Frank Van Breusegem (UGent)

(2004) JOURNAL OF BIOLOGICAL CHEMISTRY. 279(44). p.45329-45336
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- Journal Article
- A1
Partial characterization of proteolytic enzymes in different developmental stages of Ostertagia ostertagi

Hilde De Cock (UGent) , DP Knox, Edwin Claerebout (UGent) and Dirk de Graaf (UGent)

(1993) JOURNAL OF HELMINTHOLOGY. 67(4). p.271-278

Academic Bibliography

Aspergillus Fumigatus Spore Proteases Alter the Respiratory Mucosa Architecture and Facilitate Equine Herpesvirus 1 Infection

A phloem‐localized Arabidopsis metacaspase (AtMC3) improves drought tolerance

Increasing the overall proteome coverage by combining protein digestion by Tryp-N and trypsin

Mass spectrometry-based proteomics

Neutrophils affect IL-33 processing in response to the respiratory allergen Alternaria alternata

Synthesis of novel nitroxoline analogs with potent cathepsin B exopeptidase inhibitory activity

Plant proteases and programmed cell death

Self-incompatibility in Papaver pollen : programmed cell death in an acidic environment

Dietary shifts have consequences for the repertoire of allergens produced by the European house dust mite

Doping control container for urine stabilization : a pilot study

MALT1-a universal soldier: multiple strategies to ensure NF-κB activation and target gene expression

Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacterium Synechocystis sp PCC 6803

Other funtional additives

Increasing recombinant protein production in Escherichia coli K12 through metabolic engineering

The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

In vitro metabolic stability of iodinated obestatin peptides

The first MMP in sepsis

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

Influence of storage conditions on the growth of Pseudomonas species in refrigerated raw milk

Studying in vitro and in vivo protease processing in models of cancer cell death and viral infection by N-terminal COFRADIC

Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression

Receptor-mediated targeting of cathepsins in professional antigen presenting cells

SitePredicting the cleavage of proteinase substrates

Protein processing characterized by a gel-free proteomics approach

Are metacaspases caspases?

Polymorphonuclear neutrophils and Escherichia coli proteases involved in proteolysis of casein during experimental E-coli mastitis

Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis

Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine

Partial characterization of proteolytic enzymes in different developmental stages of Ostertagia ostertagi

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