Ghent University Academic Bibliography

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High-throughput assays to identify archaea-targeting nitrification inhibitors

Fabian Beeckman (UGent) , Andrzej Drozdzecki (UGent) , Alexa De Knijf (UGent) , Dominique Audenaert (UGent) , Tom Beeckman (UGent) and Hans Motte (UGent)

(2024) FRONTIERS IN PLANT SCIENCE. 14.
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Geology defines microbiome structure and composition in nunataks and valleys of the Sør Rondane Mountains, East Antarctica

Valentina Savaglia (UGent) , Sam Lambrechts (UGent) , Bjorn Tytgat (UGent) , Quinten Vanhellemont (UGent) , Josef Elster, Anne Willems (UGent) , Annick Wilmotte, Elie Verleyen (UGent) and Wim Vyverman (UGent)

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

Xaviera A. Lopez-Cortes, Jose M. Manriquez-Troncoso, Ruber Hernandez-Garcia and Daniel Peralta (UGent)

(2024) FRONTIERS IN MICROBIOLOGY. 15.
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The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Chao Wang (UGent) , Tom Defoirdt (UGent) and Andreja Rajkovic (UGent)

(2024) JOURNAL OF APPLIED MICROBIOLOGY. 135(4).
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Above- and belowground composition and diversity of subtropical plantations and their relationships with soil nutrient stocks

Liping Wei (UGent) , Yves Bergeron, Pieter De Frenne (UGent) , Kris Verheyen (UGent) , Lingmin Tian, Hai Ren and Shuguang Jian

(2024) PLANT AND SOIL. 495(1-2). p.235-252
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The dogma of the sterile uterus revisited : does microbial seeding occur during fetal life in humans and animals?

Penelope Banchi (UGent) , Barbara Colitti, Geert Opsomer (UGent) , Ada Rota and Ann Van Soom (UGent)

(2024) REPRODUCTION. 167(1).
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The immunostimulatory activity of sea spray aerosols : bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells

Yunmeng Li (UGent) , Wyona Schütte (UGent) , Max Dekeukeleire (UGent) , Colin Janssen (UGent) , Nico Boon (UGent) , Jana Asselman (UGent) , Sarah Lebeer, Irina Spacova and Maarten De Rijcke

(2024) SCIENCE OF THE TOTAL ENVIRONMENT. 927.
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Antibiofilm activity of Prevotella species from the cystic fibrosis lung microbiota against Pseudomonas aeruginosa

Lucia Grassi (UGent) , Kyle L. Asfahl, Sara Van den Bossche (UGent) , Ine Maenhout, Andrea Sass (UGent) , Yannick Vande Weygaerde (UGent) , Eva Van Braeckel (UGent) , Bruno Verhasselt (UGent) , Jerina Boelens (UGent) , Michael M. Tunney, et al.

(2024) BIOFILM. 7.
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Addition of (bio)surfactants in the biofiltration of hydrophobic volatile organic compounds in air

Paula Lamprea Pineda (UGent) , Kristof Demeestere (UGent) , José Joaquin Gonzaléz Cortés (UGent) , Nico Boon (UGent) , Frank Devlieghere (UGent) , Herman Van Langenhove (UGent) and Christophe Walgraeve (UGent)

(2024) JOURNAL OF ENVIRONMENTAL MANAGEMENT. 353.
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Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Marijn J. Timmer, Jolien De Paepe, Tim Van Winckel, Marc Spiller, Irina Spacova, Kim De Paepe (UGent) , Isabel Pintelon, Sarah Lebeer, Winnok H. De Vos, Christophe Lasseur, et al.

(2024) ACS ES&T ENGINEERING. 4(7). p.1609-1621
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Unlocking the mechanism of action : a cost-effective flow cytometry approach for accelerating antimicrobial drug development

Fabian Mermans (UGent) , Hanna De Baets (UGent) , Cristina García Timermans (UGent) , Wim Teughels and Nico Boon (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(4).
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Co-supplementation of baobab fiber and arabic gum synergistically modulates the in vitro human gut microbiome revealing complementary and promising prebiotic properties

Cindy Duysburgh, Marlies Govaert, Damien Guillemet and Massimo Marzorati (UGent)

(2024) NUTRIENTS. 16(11).
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The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome

Laura E. Mccoubrey, Nidhi Seegobin, Nannapat Sangfuang, Frederic Moens, Hans Duyvejonck, Eline Declerck, Arno Dierick, Massimo Marzorati (UGent) and Abdul W. Basit

(2024) JOURNAL OF CONTROLLED RELEASE. 369. p.630-641
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Environmental monitoring of a freezing tunnel and its close surroundings in the potato processing industry : insights into Listeria monocytogenes contamination, cleaning and disinfection efficacy, and transmission risks

Tessa Tuytschaever (UGent) , Katleen Raes (UGent) and Imca Sampers (UGent)

(2024) FOOD CONTROL. 165.
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Nitrogen and me : how little did we, and do we know about 'stikstof - azote - nitrogen'?

Willy Verstraete (UGent)

(2024) WATER RESEARCH. 258.
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Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria

Yanis Maire, François G Schmitt, Konstantinos Kormas, Sotirios Vasileiadis, Amandine Caruana, Dimitra-Ioli Skouroliakou (UGent) , Vasileios Bampouris, Lucie Courcot, Fabienne Hervé, Muriel Crouvoisier, et al.

(2024) FEMS MICROBIOLOGY ECOLOGY. 100(8).
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Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Stephanie Steyaert (UGent) , Charlotte Peeters (UGent) , Anneleen Wieme (UGent) , Astrid Muyldermans, Kristof Vandoorslaer, Theodore Spilker, Ingrid Wybo, Denis Piérard, John J. LiPuma and Peter Vandamme (UGent)

(2024) MICROBIOLOGY SPECTRUM. 12(6).
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Phage lysins for intestinal microbiome modulation : current challenges and enabling techniques

Iris Pottie (UGent) , Roberto Vázquez (UGent) , Tom Van de Wiele (UGent) and Yves Briers (UGent)

(2024) GUT MICROBES. 16(1).
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Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Nick Vereecke (UGent)

(2023)
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Challenging the hypothesis of in utero microbiota acquisition in healthy canine and feline pregnancies at term : preliminary data

Penelope Banchi (UGent) , Barbara Colitti, Andrea Del Carro, Michela Corro, Alessia Bertero, Ugo Ala, Angela Del Carro, Ann Van Soom (UGent) , Luigi Bertolotti and Ada Rota

(2023) VETERINARY SCIENCES. 10(5).
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Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 synergistically boost butyrate levels upon tributyrin administration ex vivo

Pieter Van den Abbeele (UGent) , Mallory Goggans, Stef Deyaert, Aurélien Baudot, Michiel Van de Vliet (UGent) , Marta Calatayud Arroyo (UGent) and Michael Lelah

(2023) INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 24(6).
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Combining phages and antibiotic to enhance antibiofilm efficacy against an in vitro dual species wound biofilm

Ergun Akturk, Luís D.R. Melo, Hugo Oliveira, Aurélie Crabbé (UGent) , Tom Coenye (UGent) and Joana Azeredo

(2023) BIOFILM. 6.
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Smart living biomaterials : development of a mycelium-bacteria cocultivation platform to engineer material functionalities

Hannelore Wilssens (UGent) , Marjan De Mey (UGent) and Eveline Peeters

(2023) 8th Conference on Physiology of Yeasts and Filamentous Fungi (PYFF8), Abstracts.
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Bram Danneels, Monique Blignaut, Guillaume Marti, Simon Sieber, Peter Vandamme (UGent) , Marion Meyer and Aurélien Carlier (UGent)

(2023) ENVIRONMENTAL MICROBIOLOGY. 25(2). p.454-472
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Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms - an example from dairy isolates

Faizan Ahmed Sadiq, Koen De Reu, Hans Steenackers, Ann van de Walle, Mette Burmolle and Marc Heyndrickx (UGent)

(2023) ISME COMMUNICATIONS. 3(1).
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Beneficial microbes to suppress Vibrio and improve the culture performance of copepod Tigriopus japonicus Mori

Javad Sahandi, Patrick Sorgeloos (UGent) , Kam W. Tang, Fanghong Mu, Tatyana Mayor and Wenbing Zhang

(2023) MICROBIAL PATHOGENESIS. 183.
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Optimizing control strategies for urine nitrification : narrow pH control band enhances process stability and reduces nitrous oxide emissions

Valentin Faust (UGent) , Nico Boon (UGent) , Ramon Ganigué (UGent) , Siegfried E. Vlaeminck and Kai M. Udert

(2023) FRONTIERS IN ENVIRONMENTAL SCIENCE. 11.
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Capacity of a microbial synbiotic to rescue the in vitro metabolic activity of the gut microbiome following perturbation with alcohol or antibiotics

Braden T. Tierney, Pieter Van den Abbeele, Gabriel A. Al-Ghalith, Lynn Verstrepen, Jonas Ghyselinck, Marta Calatayud Arroyo (UGent) , Massimo Marzorati (UGent) , Azza A. Gadir, Brendan Daisley, Gregor Reid, et al.

(2023) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 89(3).
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Probiotics for oral health: do they deliver what they promise?

Wannes Van Holm (UGent) , Katalina Lauwens, Pieter De Wever, Art Schuermans, Naiera Zayed (UGent) , Ferda Pamuk, Mehraveh Saghi, Pedro Fardim, Kristel Bernaerts, Nico Boon (UGent) , et al.

(2023) FRONTIERS IN MICROBIOLOGY. 14.
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Flow cytometry for on-line microbial regrowth monitoring in a membrane filtration plant : pilot-scale case study for wastewater reuse

Thomas Pluym (UGent) , Cristina García Timermans (UGent) , Sander Vervloet, Riet Cornelissen, Nico Boon (UGent) and Bart De Gusseme (UGent)

(2023) ENVIRONMENTAL SCIENCE-WATER RESEARCH & TECHNOLOGY. 9(8). p.2128-2139
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Bioaugmentation of a structural extracellular polymeric substance (EPS) producer to improve activated sludge bioflocculation : lessons learned

An-Sofie Christiaens, Robin Daenen (UGent) and Ilse Smets

(2023) WATER PRACTICE AND TECHNOLOGY. 18(7). p.1663-1680
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Gluconic acid improves performance of newly weaned piglets associated with alterations in gut microbiome and fermentation

Joris Michiels (UGent) , Damien Truffin, Maryam Majdeddin (UGent) , Mario Van Poucke (UGent) , Elout Van Liefferinge, Noémie Van Noten, Mario Vandaele (UGent) , Céline Van Kerschaver, Jeroen Degroote (UGent) , Luc Peelman (UGent) , et al.

(2023) PORCINE HEALTH MANAGEMENT. 9(1).
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Sulphate reduction, mixed sulphide- and thiosulphate-driven Autotrophic denitrification, NItrification, and Anammox (SANIA) integrated process for sustainable wastewater treatment

Chu-Kuan Jiang, Yang-Fan Deng, Zou Xu, Buddhima Siriweera, Di Wu (UGent) and Guang-Hao Chen

(2023) WATER RESEARCH. 247.
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Enhancing microbial salt tolerance through low-voltage stimulation for improved p-chloronitrobenzene (p-CNB) removal in high-salinity wastewater

Long Chen, Li-Ting Zhou, Yang-Cheng Ding, Di Wu (UGent) and Hua-Jun Feng

(2023) SCIENCE OF THE TOTAL ENVIRONMENT. 905.
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Bacteria involved in 128 septic foals and their antimicrobial resistance

Donatienne Castelain (UGent) , Mathilde Pas (UGent) , Alexander Dufourni (UGent) , Ellen Paulussen (UGent) , Laurence Lefère (UGent) , Jade Bokma (UGent) , Filip Boyen (UGent) , Gunther van Loon (UGent) and Bart Pardon (UGent)

(2023) 5th International Conference of the European College of Veterinary Microbiology (ICECVM 2023), Abstracts.
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The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Gowri Amanda Hettiarachchi (UGent) , Margo Cnockaert (UGent) , Marie Joossens (UGent) , Antoine Gekiere, Ivan Meeus (UGent) , Nicolas J. Vereecken, Denis Michez, Guy Smagghe (UGent) and Peter Vandamme (UGent)

(2023) MICROBIAL ECOLOGY. 86(4). p.3013-3026
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Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur

Sofie Rutjens (UGent) , Nick Vereecke (UGent) , Jannes Sauer (UGent) , Siska Croubels (UGent) and Mathias Devreese (UGent)

(2023) VETERINARY RESEARCH. 54(1).
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Novel endophytic Pseudescherichia sp. GSE25 strain significantly controls Fusarium graminearum and reduces deoxynivalenol in Wheat

Meiling Gao, Mohamed Fathi Abdallah (UGent) , Minggui Song, Yiqian Xu, Daiyuan Sun, Ping Lu and Jianhua Wang

(2023) TOXINS. 15(12).
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Klinische aanpak van puppysterfte bij de hond

Penelope Banchi (UGent) , Joke Lannoo (UGent) , Guillaume Domain (UGent) , Robby van Leeuwenberg and Ann Van Soom (UGent)

(2023) VLAAMS DIERGENEESKUNDIG TIJDSCHRIFT. 92(2). p.82-90
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Warming and nutrient enrichment can trigger seaweed loss by dysregulation of the microbiome structure and predicted function

Francesco Paolo Mancuso (UGent) , Kathryn Morrissey, Olivier De Clerck (UGent) and Laura Airoldi

(2023) SCIENCE OF THE TOTAL ENVIRONMENT. 879.
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Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome

Kankana Kundu (UGent) , Josefien Van Landuyt (UGent) , Valérie Mattelin (UGent) , Bram Martin (UGent) , Marijke Neyts, Koen Parmentier and Nico Boon (UGent)

(2023) MARINE POLLUTION BULLETIN. 190.
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Bacterial responses to plant antimicrobials : the case of alkannin and shikonin derivatives

Angélique Rat (UGent) , Antigoni E. Koletti, Nebojsa Rodic, Vassilios P. Papageorgiou, Anne Willems (UGent) and Andreana N. Assimopoulou

(2023) FRONTIERS IN PHARMACOLOGY. 14.
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Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov

Henry David Naranjo Benavides (UGent) , Liesbeth Lebbe (UGent) , Margo Cnockaert (UGent) , Florent Lassalle, Chin Chin Too (UGent) and Anne Willems (UGent)

(2023) SYSTEMATIC AND APPLIED MICROBIOLOGY. 46(3).
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Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

Pieter Candry, Grayson L. Chadwick, Jose Maria Caravajal-Arroyo, Tim Lacoere (UGent) , Mari-Karoliina Henriikka Winkler, Ramon Ganigué (UGent) , Victoria J. Orphan and Korneel Rabaey (UGent)

(2023) ISME JOURNAL. 17(11). p.2014-2022
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Microbial life strategy with high rRNA operon copy number facilitates the energy and nutrient flux in anaerobic digestion

Qiang Lin, Jo De Vrieze (UGent) , Xiaoyu Fang, Lingjuan Li and Xiangzhen Li

(2022) WATER RESEARCH. 226.
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GNBP1 as a potential RNAi target to enhance the virulence of Beauveria bassiana for aphid control

Chao Ye, Zheng-Wu Wang, Yuan-Lan Sheng, Zi-Guo Wang, Guy Smagghe (UGent) , Olivier Christiaens (UGent) , Jinzhi Niu and Jin-Jun Wang

(2022) JOURNAL OF PEST SCIENCE. 95(1). p.87-100
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Proteomics-based characterization of ISG15 signaling in host defense mechanisms against microbial infection

Fabien Henri Thery (UGent)

(2022)
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Chemical composition of five Tunisian Pinus Species' essential oils and effect of their blends on Otitis infection

Elaissi Ameur, Moumni Essahli Sarra, Khtatfa Takoua, Kouja Mariem, Abid Nabil, Frederic Lynen (UGent) and Khouja Mohamed Larbi

(2022) INDUSTRIAL CROPS AND PRODUCTS. 180.
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Influence of Mycoplasma hyopneumoniae natural infection on the respiratory microbiome diversity of finishing pigs

Karina Sonalio (UGent) , Henrique M. S. Almeida, Marina L. Mechler-Dreibi, Gabriel Y. Storino, Freddy Haesebrouck (UGent) , Dominiek Maes (UGent) and Luis Guilherme de Oliveira

(2022) VETERINARY RESEARCH. 53(1).
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The effect of amino acids on production of SCFA and bCFA by members of the porcine colonic microbiota

Pieter Van den Abbeele (UGent) , Jonas Ghyselinck, Massimo Marzorati (UGent) , Anna-Maria Koch, William Lambert, Joris Michiels (UGent) and Tristan Chalvon-Demersay

(2022) MICROORGANISMS. 10(4).
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Culture of Artemia franciscana nauplii with selected microbes suppressed Vibrio loading and enhanced survival, population stability, enzyme activity, and chemical composition

Javad Sahandi, Patrick Sorgeloos (UGent) and Wenbing Zhang

(2022) AQUACULTURE INTERNATIONAL. 30(5). p.2279-2293
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Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa

Caoimhe Lynch, Charlotte Peeters (UGent) , Niamh Walsh, Conor McCarthy, Aidan Coffey, Brigid Lucey and Peter Vandamme (UGent)

(2022) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 72(12).
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Bacterial exudates as growth-promoting agents for the cultivation of commercially relevant marine microalgal strains

Justine Sauvage (UGent) , Gary H. Wikfors, Mark S. Dixon, Diane Kapareiko, Koen Sabbe (UGent) , Xiaoxu Li and Alyssa Joyce

(2022) JOURNAL OF THE WORLD AQUACULTURE SOCIETY. 53(6). p.1101-1119
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Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group

Helen R. Davison, Jack Pilgrim, Nicky Wybouw (UGent) , Joseph Parker, Stacy Pirro, Simon Hunter-Barnett, Paul M. Campbell, Frances Blow, Alistair C. Darby, Gregory D. D. Hurst, et al.

(2022) NATURE COMMUNICATIONS. 13(1).
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A bioanalytical screening method for Enterococcus faecalis RNPP-type quorum sensing peptides in murine feces

Frederick Verbeke, Nathan Debunne (UGent) , Yorick Janssens (UGent) , Bart De Spiegeleer (UGent) and Evelien Wynendaele (UGent)

(2022) BIOANALYSIS. 14(3). p.151-167
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The impact of the multichannel quorum sensing systems of Vibrio tasmaniensis and Vibrio crassostreae on virulence towards blue mussel (Mytilus edulis) larvae

Shikder Saiful Islam, Shanshan Zhang (UGent) , Mieke Eggermont (UGent) , Maxime Bruto, Frederique Le Roux and Tom Defoirdt (UGent)

(2022) AQUACULTURE. 547.
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Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions

Ho Manh Tuong (UGent) , Sonia García Méndez (UGent) , Michiel Vandecasteele (UGent) , Anne Willems (UGent) , Dexian Luo, Stien Beirinckx and Sofie Goormachtig (UGent)

(2022) PLANT AND SOIL. 473(1-2). p.547-571
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Lessons learnt from different inoculation strategies for pilot-scale start-up of partial nitritation for landfill leachate treatment

Cecilia Bruni, Giulia Cipolletta, Çağrı Akyol (UGent) , Anna Laura Eusebi and Francesco Fatone

(2022) ENVIRONMENTAL TECHNOLOGY & INNOVATION. 27.
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Trans-kingdom interactions in mixed biofilm communities

Faizan Ahmed Sadiq, Mads Frederik Hansen, Mette Burmolle, Marc Heyndrickx (UGent) , Steve Flint, Wenwei Lu, Wei Chen and Hao Zhang

(2022) FEMS MICROBIOLOGY REVIEWS. 46(5).
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Isolation, screening, identification and optimization of culture parameters to produce gamma-aminobutyric acid by Lactiplantibacillus pentosus R13, an isolate from ruoc (fermented shrimp paste)

Do Thi Bich Thuy, Tien-An Nguyen and Peter Vandamme (UGent)

(2022) APPLIED FOOD BIOTECHNOLOGY. 9(1). p.1-8
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Bacteria involved in 128 septic foals and their antimicrobial resistance

Donatienne Castelain (UGent) , Alexander Dufourni (UGent) , Ellen Paulussen (UGent) , Laurence Lefère (UGent) , Filip Boyen (UGent) , Gunther van Loon (UGent) and Bart Pardon (UGent)

(2022) 15th ECEIM Congress Online Proceedings Book.
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In vitro and in vivo antimicrobial activity of cinnamaldehyde and derivatives towards the intestinal bacteria of the weaned piglet

Elout Van Liefferinge, Claudio Forte, Jeroen Degroote (UGent) , Anneke Ovyn (UGent) , Noémie Van Noten, Sven Mangelinckx (UGent) and Joris Michiels (UGent)

(2022) ITALIAN JOURNAL OF ANIMAL SCIENCE. 21(1). p.493-506
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Indole decreases the virulence of the bivalve model pathogens Vibrio tasmaniensis LGP32 and Vibrio crassostreae J2-9

Shanshan Zhang (UGent) , Qian Yang (UGent) , Songzhe Fu, Colin Janssen (UGent) , Mieke Eggermont (UGent) and Tom Defoirdt (UGent)

(2022) SCIENTIFIC REPORTS. 12(1).
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Comparative genomics and physiology of Akkermansia muciniphila isolates from human intestine reveal specialized mucosal adaptation

Janneke P. Ouwerkerk, Hanne L. P. Tytgat, Janneke Elzinga, Jasper Koehorst, Pieter Van den Abbeele (UGent) , Bernard Henrissat, Miguel Gueimonde, Patrice D. Cani, Tom Van de Wiele (UGent) , Clara Belzer, et al.

(2022) MICROORGANISMS. 10(8).
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Global patterns in endemicity and vulnerability of soil fungi

Leho Tedersoo, Vladimir Mikryukov, Alexander Zizka, Mohammad Bahram, Niloufar Hagh-Doust, Sten Anslan, Oleh Prylutskyi, Manuel Delgado-Baquerizo, Fernando T. Maestre, Jaan Parn, et al.

(2022) GLOBAL CHANGE BIOLOGY. 28(22). p.6696-6710
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Aphidophagous ladybird beetles adapt to an aphid symbiont

Xue-Yong Du, Huan-Ying Yang, Sen-Rui Gong, Pei-Fang Zhang, Pei-Tao Chen, Yuan-Sen Liang, Yu-Hao Huang, Xue-Fei Tang, Qiao-Kui Chen, Patrick De Clercq (UGent) , et al.

(2022) FUNCTIONAL ECOLOGY. 36(10). p.2593-2604
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Tree species diversity and forest edge density jointly shape the gut microbiota composition in juvenile great tits (Parus major)

Evy Goossens (UGent) , Roschong Boonyarittichaikij (UGent) , Daan Dekeukeleire, Lionel Hertzog (UGent) , Sarah Van Praet (UGent) , Frank Pasmans (UGent) , Dries Bonte (UGent) , Kris Verheyen (UGent) , Luc Lens (UGent) , An Martel (UGent) , et al.

(2022) FRONTIERS IN MICROBIOLOGY. 13.
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Halogenated indoles decrease the virulence of Vibrio campbellii in a gnotobiotic brine shrimp model

Shanshan Zhang (UGent) , Qian Yang and Tom Defoirdt (UGent)

(2022) MICROBIOLOGY SPECTRUM. 10(5).
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Distinct membrane fouling characteristics of anammox MBR with low NO2−-N/NH4+-N ratio

Chukuan Jiang, Xi Tang, Fan Feng, Jiangwei Zhao, Zhigong Liu, Caiyan Qu, Keshab Adhikary, Di Wu (UGent) and Chong-Jian Tang

(2022) SCIENCE OF THE TOTAL ENVIRONMENT. 817.
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European-wide antimicrobial resistance monitoring in commensal Escherichia coli isolated from healthy food animals between 2004 and 2018

Anno De Jong, Farid El Garch, Didier Hocquet, Ellen Prenger-Berninghoff, Jeroen Dewulf (UGent) , Lourdes Migura-Garcia, Agnes Perrin-Guyomard, Kees T. Veldman, Szilard Janosi, Magdalena Skarzynska, et al.

(2022) JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY. 77(12). p.3301-3311
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High rate production of concentrated sulfides from metal bearing wastewater in an expanded bed hydrogenotrophic sulfate reducing bioreactor

Pieter Ostermeyer, Josefien Van Landuyt (UGent) , Luiza Bonin (UGent) , Karel Folens (UGent) , Adam Williamson (UGent) , Tom Hennebel (UGent) and Korneel Rabaey (UGent)

(2022) ENVIRONMENTAL SCIENCE AND ECOTECHNOLOGY. 11.
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Endophytic Paenibacillus polymyxa LMG27872 inhibits Meloidogyne incognita parasitism, promoting tomato growth through a dose-dependent effect

Richard Raj Singh (UGent) and Wim Wesemael (UGent)

(2022) FRONTIERS IN PLANT SCIENCE. 13.
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Root-associated bacteria modulate the specialised metabolome of Lithospermum officinale L.

Alicia Varela Alonso, Henry David Naranjo Benavides (UGent) , Angélique Rat (UGent) , Nebojsa Rodic, I Nannou, Christina, Dimitra A. Lambropoulou, Andreana N. Assimopoulou, Stephane Declerck, Philipp Rödel, Carolin Schneider, et al.

(2022) FRONTIERS IN PLANT SCIENCE. 13.
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The future of functional clothing for an improved skin and textile microbiome relationship

Rosanna Broadhead (UGent) , Laure Craeye (UGent) and Chris Callewaert (UGent)

(2021) MICROORGANISMS. 9(6).
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Functional pangenome analysis reveals high virulence plasticity of Aliarcobacter butzleri and affinity to human mucus

Davide Buzzanca (UGent) , Cristian Botta, Ilario Ferrocino, Valentina Alessandria, Kurt Houf (UGent) and Kalliopi Rantsiou

(2021) GENOMICS. 113(4). p.2065-2076
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Ultra-high pressure treatment controls in vitro fecal fermentation rate of insoluble dietary fiber from Rosa roxburghii tratt pomace and induces butyrogenic shifts in microbiota composition

Shaokang Wang, Jie Xia, Kim De Paepe (UGent) , Bin Zhang, Xiong Fu, Qiang Huang and Tom Van de Wiele (UGent)

(2021) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. 69(36). p.10638-10647
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2 ' FL and LNnT exert antipathogenic effects against C. difficile ATCC 9689 in vitro, coinciding with increased levels of Bifidobacteriaceae and/or secondary bile acids

Louise Kristine Vigsnaes, Jonas Ghyselinck, Pieter van den Abbeele, Bruce McConnell, Frederic Moens, Massimo Marzorati (UGent) and Danica Bajic

(2021) PATHOGENS. 10(8).
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Plasma damage control : from biomolecules to cells and skin

Ivana Sremački, Spela Kos, Masa Bosnjak, Andrea Jurov, Gregor Sersa, Martina Modic, Christophe Leys (UGent) , Uros Cvelbar and Anton Nikiforov (UGent)

(2021) ACS APPLIED MATERIALS & INTERFACES. 13(39). p.46303-46316
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The capabilities of bacteria and archaea to alter natural building stones : a review

Laurenz Schröer (UGent) , Nico Boon (UGent) , Tim De Kock and Veerle Cnudde (UGent)

(2021) INTERNATIONAL BIODETERIORATION & BIODEGRADATION. 165.
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Bacillus subtilis 29784 as a feed additive for broilers shifts the intestinal microbial composition and supports the production of hypoxanthine and nicotinic acid

Pearl Choi, Lamya Rhayat, Eric Pinloche, Estelle Devillard, Ellen De Paepe (UGent) , Lynn Vanhaecke (UGent) , Freddy Haesebrouck (UGent) , Richard Ducatelle (UGent) , Filip Van Immerseel (UGent) and Evy Goossens (UGent)

(2021) ANIMALS. 11(5).
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Spontaneous phage resistance in avian pathogenic Escherichia coli

Patricia Espenhain Sørensen, Sharmin Baig, Marc Stegger, Hanne Ingmer, An Garmyn (UGent) and Patrick Butaye (UGent)

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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ILC3s control airway inflammation by limiting T cell responses to allergens and microbes

Fei Teng, Roser Tacho-Pinot, Biin Sung, Donna L. Farber, Stefan Worgall, Hamida Hammad (UGent) , Bart Lambrecht (UGent) , Matthew R. Hepworth and Gregory F. Sonnenberg

(2021) CELL REPORTS. 37(8).
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Consistent prebiotic effects of carrot RG-I on the gut microbiota of four human adult donors in the SHIME® model despite baseline individual variability

Pieter Van den Abbeele, Cindy Duysburgh, Ilse Cleenwerck (UGent) , Ruud Albers, Massimo Marzorati (UGent) and Annick Mercenier

(2021) MICROORGANISMS. 9(10).
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Insights into a pyruvate sensing and uptake system in Vibrio campbellii and its importance for virulence

Stephanie Going, Ana Florencia Gasperotti, Qian Yang (UGent) , Tom Defoirdt (UGent) and Kirsten Jung

(2021) JOURNAL OF BACTERIOLOGY. 203(20).
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Starch microspheres entrapped with chitosan delay in vitro fecal fermentation and regulate human gut microbiota composition

Shaokang Wang, Kim De Paepe (UGent) , Tom Van de Wiele (UGent) , Xiong Fu, Yang Yuan, Bin Zhang and Qiang Huang

(2021) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. 69(41). p.12323-12332
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Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor

Valerie Van Eesbeeck, Ruben Props (UGent) , Mohamed Mysara, Pauline C. M. Petit, Corinne Rivasseau, Jean Armengaud, Pieter Monsieurs, Jacques Mahillon and Natalie Leys

(2021) FRONTIERS IN MICROBIOLOGY. 12.
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Resource allocation explains lactic acid production in mixed-culture anaerobic fermentations

Alberte Regueira López (UGent) , Julius. L. Rombouts, S. Aljoscha Wahl, Miguel Mauricio‐Iglesias, Juan M. Lema and Robbert Kleerebezem

(2021) BIOTECHNOLOGY AND BIOENGINEERING. 118(2). p.745-758
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Steering the conversion of protein residues to volatile fatty acids by adjusting pH

R. Bevilacqua, Alberte Regueira López (UGent) , M. Mauricio-Iglesias, J. M. Lema and M. Carballa

(2021) BIORESOURCE TECHNOLOGY. 320(B).
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Effect of a carotenoid-producing Bacillus strain on intestinal barrier integrity and systemic delivery of carotenoids : a randomised trial in animals and humans

Yala Stevens, Iris Pinheiro, Bouke Salden, Cindy Duysburgh, Selin Bolca, Jeroen Degroote (UGent) , Maryam Majdeddin (UGent) , Noémie Van Noten, Béatrice Gleize, Catherine Caris-Veyrat, et al.

(2021) JOURNAL OF FUNCTIONAL FOODS. 80.
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A viability quantitative PCR dilemma : are longer amplicons better?

Wannes Van Holm (UGent) , Justien Ghesquiere, Nico Boon (UGent) , Tim Verspecht, Kristel Bernaerts, Naiera Zayed, Ioanna Chatzigiannidou and Wim Teughels

(2021) APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 87(5).
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The role of transport proteins in the production of microbial glycolipid biosurfactants

Silke Claus (UGent) , Liam Richard Jenkins Sánchez (UGent) and Inge Van Bogaert (UGent)

(2021) APPLIED MICROBIOLOGY AND BIOTECHNOLOGY. 105(5). p.1779-1793
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Low microbial biomass within the reproductive tract of mid-lactation dairy cows : a study approach

Leen Lietaer, Osvaldo Américo Bogado Pascottini (UGent) , Emma Hernandez-Sanabria, Frederiek-Maarten Kerckhof (UGent) , Tim Lacoere (UGent) , Nico Boon (UGent) , Lieven Vlaminck (UGent) , Geert Opsomer (UGent) and Tom Van de Wiele (UGent)

(2021) JOURNAL OF DAIRY SCIENCE. 104(5). p.6159-6174
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Selective leaching of copper and zinc from primary ores and secondary mineral residues using biogenic ammonia

Adam Williamson (UGent) , Florian Verbruggen, Vania Scarlet Chavez Rico, Jef Bergmans, Jeroen Spooren, Lourdes Yurramendi, Gijs Du Laing (UGent) , Nico Boon (UGent) and Tom Hennebel (UGent)

(2021) JOURNAL OF HAZARDOUS MATERIALS. 403.
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Fecal microbiota transplantation reduces symptoms in some patients with irritable bowel syndrome with predominant abdominal bloating : short- and long-term results from a placebo-controlled randomized trial

Tom Holvoet, Marie Joossens (UGent) , Jorge F. Vazquez-Castellanos, Evelien Christiaens, Lander Heyerick (UGent) , Jerina Boelens (UGent) , Bruno Verhasselt (UGent) , Hans Van Vlierberghe (UGent) , Martine De Vos (UGent) , Jeroen Raes (UGent) , et al.

(2021) GASTROENTEROLOGY. 160(1). p.145-157.e8
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Aspiration risk factors, microbiology, and empiric antibiotics for patients hospitalized with community-acquired pneumonia

Judith Marin-Corral, Sergi Pascual-Guardia, Francesco Amati, Stefano Aliberti, Joan R. Masclans, Nilam Soni, Alejandro Rodriguez, Oriol Sibila, Francisco Sanz, Giovanni Sotgiu, et al.

(2021) CHEST. 159(1). p.58-72
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Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

Jolien D'aes, Marie-Alice Fraiture, Bert Bogaerts, Sigrid C. J. De Keersmaecker, Nancy H. C. Roosens and Kevin Vanneste

(2021) FOODS. 10(11).
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Current knowledge on the human eye microbiome : a systematic review of available amplicon and metagenomic sequencing data

Heleen Delbeke, Saif Younas, Ingele Casteels and Marie Joossens (UGent)

(2021) ACTA OPHTHALMOLOGICA. 99(1). p.16-25
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Microbial fermentation of Fossence (TM), a short-chain fructo-oligosaccharide, under simulated human proximal colonic condition and assessment of its prebiotic effects-a pilot study

Deepika P. Tiwari, Priyali Shah, Pieter Van den Abbeele, Massimo Marzorati (UGent) , Marta Calatayud Arroyo (UGent) , Jonas Ghyselinck, Ashok Kumar Dubey, S. Narayanan and Manish Jain

(2021) FEMS MICROBIOLOGY LETTERS. 368(21-24).
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Effect of biochar and compost on the bacterial soil community

Lisa Joos (UGent) , Caroline De Tender (UGent) , Sarah Ommeslag, Wouter Asselberg, Jane Debode and Bart Vandecasteele

(2021) II INTERNATIONAL SYMPOSIUM ON GROWING MEDIA, SOILLESS CULTIVATION, AND COMPOST UTILIZATION IN HORTICULTURE. In Acta Horticulturae 1317. p.379-388
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Evaluation of nanopore sequencing as a diagnostic tool for the rapid identification of Mycoplasma bovis from individual and pooled respiratory tract samples

Jade Bokma (UGent) , Nick Vereecke (UGent) , Mathilde Pas (UGent) , Laurens Chantillon (UGent) , Marianne Vahl, Eefke Weesendorp, Ruud H. Deurenberg, Hans Nauwynck (UGent) , Freddy Haesebrouck (UGent) , Sebastiaan Theuns (UGent) , et al.

(2021) JOURNAL OF CLINICAL MICROBIOLOGY. 59(12).

High-throughput assays to identify archaea-targeting nitrification inhibitors

Geology defines microbiome structure and composition in nunataks and valleys of the Sør Rondane Mountains, East Antarctica

MSDeepAMR : antimicrobial resistance prediction based on deep neural networks and transfer learning

The impact of indole and mucin on sporulation, biofilm formation and enterotoxin production in foodborne Clostridium perfringens

Above- and belowground composition and diversity of subtropical plantations and their relationships with soil nutrient stocks

The dogma of the sterile uterus revisited : does microbial seeding occur during fetal life in humans and animals?

The immunostimulatory activity of sea spray aerosols : bacteria and endotoxins activate TLR4, TLR2/6, NF-κB and IRF in human cells

Antibiofilm activity of Prevotella species from the cystic fibrosis lung microbiota against Pseudomonas aeruginosa

Addition of (bio)surfactants in the biofiltration of hydrophobic volatile organic compounds in air

Resource-efficient nitrogen removal from source-separated urine with partial nitritation/anammox in a membrane-aerated biofilm reactor

Unlocking the mechanism of action : a cost-effective flow cytometry approach for accelerating antimicrobial drug development

Co-supplementation of baobab fiber and arabic gum synergistically modulates the in vitro human gut microbiome revealing complementary and promising prebiotic properties

The colon targeting efficacies of mesalazine medications and their impacts on the gut microbiome

Environmental monitoring of a freezing tunnel and its close surroundings in the potato processing industry : insights into Listeria monocytogenes contamination, cleaning and disinfection efficacy, and transmission risks

Nitrogen and me : how little did we, and do we know about 'stikstof - azote - nitrogen'?

Effects of turbulence on diatoms of the genus Pseudo-nitzschia spp. and associated bacteria

Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns

Phage lysins for intestinal microbiome modulation : current challenges and enabling techniques

Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Challenging the hypothesis of in utero microbiota acquisition in healthy canine and feline pregnancies at term : preliminary data

Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 synergistically boost butyrate levels upon tributyrin administration ex vivo

Combining phages and antibiotic to enhance antibiofilm efficacy against an in vitro dual species wound biofilm

Smart living biomaterials : development of a mycelium-bacteria cocultivation platform to engineer material functionalities

Cyclitol metabolism is a central feature of Burkholderia leaf symbionts

Dynamic social interactions and keystone species shape the diversity and stability of mixed-species biofilms - an example from dairy isolates

Beneficial microbes to suppress Vibrio and improve the culture performance of copepod Tigriopus japonicus Mori

Optimizing control strategies for urine nitrification : narrow pH control band enhances process stability and reduces nitrous oxide emissions

Capacity of a microbial synbiotic to rescue the in vitro metabolic activity of the gut microbiome following perturbation with alcohol or antibiotics

Probiotics for oral health: do they deliver what they promise?

Flow cytometry for on-line microbial regrowth monitoring in a membrane filtration plant : pilot-scale case study for wastewater reuse

Bioaugmentation of a structural extracellular polymeric substance (EPS) producer to improve activated sludge bioflocculation : lessons learned

Gluconic acid improves performance of newly weaned piglets associated with alterations in gut microbiome and fermentation

Sulphate reduction, mixed sulphide- and thiosulphate-driven Autotrophic denitrification, NItrification, and Anammox (SANIA) integrated process for sustainable wastewater treatment

Enhancing microbial salt tolerance through low-voltage stimulation for improved p-chloronitrobenzene (p-CNB) removal in high-salinity wastewater

Bacteria involved in 128 septic foals and their antimicrobial resistance

The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur

Novel endophytic Pseudescherichia sp. GSE25 strain significantly controls Fusarium graminearum and reduces deoxynivalenol in Wheat

Klinische aanpak van puppysterfte bij de hond

Warming and nutrient enrichment can trigger seaweed loss by dysregulation of the microbiome structure and predicted function

Enhanced removal of warfare agent tri-nitro-toluene by a Methylophaga-dominated microbiome

Bacterial responses to plant antimicrobials : the case of alkannin and shikonin derivatives

Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov

Trophic interactions shape the spatial organization of medium-chain carboxylic acid producing granular biofilm communities

Microbial life strategy with high rRNA operon copy number facilitates the energy and nutrient flux in anaerobic digestion

GNBP1 as a potential RNAi target to enhance the virulence of Beauveria bassiana for aphid control

Proteomics-based characterization of ISG15 signaling in host defense mechanisms against microbial infection

Chemical composition of five Tunisian Pinus Species' essential oils and effect of their blends on Otitis infection

Influence of Mycoplasma hyopneumoniae natural infection on the respiratory microbiome diversity of finishing pigs

The effect of amino acids on production of SCFA and bCFA by members of the porcine colonic microbiota

Culture of Artemia franciscana nauplii with selected microbes suppressed Vibrio loading and enhanced survival, population stability, enzyme activity, and chemical composition

Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa

Bacterial exudates as growth-promoting agents for the cultivation of commercially relevant marine microalgal strains

Genomic diversity across the Rickettsia and ‘Candidatus Megaira’ genera and proposal of genus status for the Torix group

A bioanalytical screening method for Enterococcus faecalis RNPP-type quorum sensing peptides in murine feces

The impact of the multichannel quorum sensing systems of Vibrio tasmaniensis and Vibrio crassostreae on virulence towards blue mussel (Mytilus edulis) larvae

Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions

Lessons learnt from different inoculation strategies for pilot-scale start-up of partial nitritation for landfill leachate treatment

Trans-kingdom interactions in mixed biofilm communities

Isolation, screening, identification and optimization of culture parameters to produce gamma-aminobutyric acid by Lactiplantibacillus pentosus R13, an isolate from ruoc (fermented shrimp paste)

Bacteria involved in 128 septic foals and their antimicrobial resistance

In vitro and in vivo antimicrobial activity of cinnamaldehyde and derivatives towards the intestinal bacteria of the weaned piglet

Indole decreases the virulence of the bivalve model pathogens Vibrio tasmaniensis LGP32 and Vibrio crassostreae J2-9

Comparative genomics and physiology of Akkermansia muciniphila isolates from human intestine reveal specialized mucosal adaptation

Global patterns in endemicity and vulnerability of soil fungi

Aphidophagous ladybird beetles adapt to an aphid symbiont

Tree species diversity and forest edge density jointly shape the gut microbiota composition in juvenile great tits (Parus major)

Halogenated indoles decrease the virulence of Vibrio campbellii in a gnotobiotic brine shrimp model

Distinct membrane fouling characteristics of anammox MBR with low NO2−-N/NH4+-N ratio

European-wide antimicrobial resistance monitoring in commensal Escherichia coli isolated from healthy food animals between 2004 and 2018

High rate production of concentrated sulfides from metal bearing wastewater in an expanded bed hydrogenotrophic sulfate reducing bioreactor

Endophytic Paenibacillus polymyxa LMG27872 inhibits Meloidogyne incognita parasitism, promoting tomato growth through a dose-dependent effect

Root-associated bacteria modulate the specialised metabolome of Lithospermum officinale L.

The future of functional clothing for an improved skin and textile microbiome relationship

Functional pangenome analysis reveals high virulence plasticity of Aliarcobacter butzleri and affinity to human mucus

Ultra-high pressure treatment controls in vitro fecal fermentation rate of insoluble dietary fiber from Rosa roxburghii tratt pomace and induces butyrogenic shifts in microbiota composition

2 ' FL and LNnT exert antipathogenic effects against C. difficile ATCC 9689 in vitro, coinciding with increased levels of Bifidobacteriaceae and/or secondary bile acids

Plasma damage control : from biomolecules to cells and skin

The capabilities of bacteria and archaea to alter natural building stones : a review

Bacillus subtilis 29784 as a feed additive for broilers shifts the intestinal microbial composition and supports the production of hypoxanthine and nicotinic acid