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- Journal Article
- A1
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Towards an inclusive system for the annotation of (dis)fluency in typical and atypical speech
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- Journal Article
- A1
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Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots
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- Journal Article
- A1
- open access
Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum
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- Journal Article
- A1
- open access
The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids
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Annotation via LLM (Large Language Models) in Digital Literary Studies : beating (about) the bots?
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- Journal Article
- A1
- open access
Post-feeding transcriptomics reveals essential genes expressed in the midgut of the desert locust
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- Journal Article
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Exposing the small protein load of bacterial life
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- Journal Article
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- open access
The Helicobacter pylori Genome Project : insights into H. pylori population structure from analysis of a worldwide collection of complete genomes
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- Journal Article
- A1
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Limited evidence for protein products of non-coding transcripts in the HEK293T cellular cytosol
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An integrated approach for synonymization of Rotylenchus rhomboides with R. goodeyi (Nematoda: Hoplolaimidae) reveals high intraspecific mitogenomic variation
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- Journal Article
- A1
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Genomic and metabolomic analyses of the marine fungus Emericellopsis cladophorae : insights into saltwater adaptability mechanisms and its biosynthetic potential
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- Journal Article
- A1
- open access
Comparative genomics and physiology of Akkermansia muciniphila isolates from human intestine reveal specialized mucosal adaptation
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- Journal Article
- A1
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Comparison of Magnoliaceae plastomes : adding Neotropical magnolia to the discussion
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- Journal Article
- A1
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Whole-genome sequences of two Kazachstania barnettii strains isolated from anthropic environments
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- Journal Article
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Introduction to the principles and methods underlying the recovery of metagenome-assembled genomes from metagenomic data
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- Journal Article
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Multicentric exploration of tool annotation in robotic surgery : lessons learned when starting a surgical artificial intelligence project
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- Journal Article
- A1
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Chromosome‐scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication
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Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)
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- Journal Article
- A1
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Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe)
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- Conference Paper
- C1
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Desiderata for the annotation of information structure in complex sentences
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- Journal Article
- A1
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Maize specialized metabolome networks reveal organ-preferential mixed glycosides
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- Journal Article
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Seeing the forest for the trees : retrieving plant secondary biochemical pathways from metabolome networks
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- Journal Article
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A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies
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- Journal Article
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Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen
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- Journal Article
- A1
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Towards building a quantitative proteomics toolbox in precision medicine : a mini-review
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- Journal Article
- A1
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Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production
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- Journal Article
- A2
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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- Journal Article
- A1
- open access
Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation
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- Journal Article
- A1
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TRAPID 2.0 : a web application for taxonomic and functional analysis of de novo transcriptomes
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- Journal Article
- A1
- open access
The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments
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- Journal Article
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Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome
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- Journal Article
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Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger
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- Journal Article
- A1
- open access
RNAcentral 2021 : secondary structure integration, improved sequence search and new member databases
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- Journal Article
- A1
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A chromosome‐level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop
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- Miscellaneous
- open access
ACTER terminology annotation guidelines
(2021) -
Adaptation to extreme Antarctic environments revealed by the genome of a sea ice green alga
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- Journal Article
- A1
- open access
instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder
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Leeuwenhoekiella aestuarii sp. nov., isolated from salt-water sediment and first insights in the genomes of Leeuwenhoekiella species
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Reduced stress defense responses contribute to the higher toxicity of a pesticide under warming
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- Journal Article
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- open access
Genome-wide analysis of long non-coding RNAs in adult tissues of the melon fly, Zeugodacus cucurbitae (Coquillett)
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Spatio-temporal patterns in the gene expression of the calanoid copepod Temora longicornis in the Belgian part of the North Sea
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- Journal Article
- A1
- open access
Chromosome-level genome assembly of a parent species of widely cultivated azaleas
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Evaluating the potential of direct RNA nanopore sequencing : metatranscriptomics highlights possible seasonal differences in a marine pelagic crustacean zooplankton community
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- Journal Article
- A1
- open access
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
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- Journal Article
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- open access
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
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- Journal Article
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- open access
Draft genomes of two Artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis)
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- Journal Article
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- open access
The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms
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- Journal Article
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- open access
Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants
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- Conference Paper
- P1
- open access
A Penn-style treebank of Middle Low German
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Annotated Corpora for Term Extraction Research (ACTER)
(2020) -
Reliability vs. granularity in discourse annotation : what is the trade-off?
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- Journal Article
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Comparative genomics of Pandoraea, a genus enriched in xenobiotic biodegradation and metabolism
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- Journal Article
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Pseudo-chromosome-length genome assembly of a double haploid 'Bartlett' pear (Pyrus communis L.)
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Multiple independent recruitment of sodefrin precursor-like factors in anuran sexually dimorphic glands
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- Journal Article
- A2
- open access
Draft genome assembly of the false spider mite Brevipalpus yothersi
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- Journal Article
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Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae
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- Journal Article
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Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude
(2019) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 116(14). p.7137-7146 -
Comparative analysis of two sister Erythrophleum species (Leguminosae) reveal contrasting transcriptome-wide responses to early drought stress
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- Journal Article
- A1
- open access
Genome sequence of Malania oleifera, a tree with great value for nervonic acid production
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- Journal Article
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- open access
High-throughput functional analysis of lncRNA core promoters elucidates rules governing tissue-specificity
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- Journal Article
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- open access
LNCipedia 5 : towards a reference set of human long non-coding RNAs
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- Journal Article
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- open access
RNAcentral : a hub of information for non-coding RNA sequences
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- Book Chapter
- open access
Local vs. global scope of discourse markers : corpus-based evidence from syntax and pauses
(2019) Empirical studies of the construction of discourse. In Pragmatics & Beyond New Series 305. p.43-59 -
- Journal Article
- A1
- open access
Associated bacteria affect sexual reproduction by altering gene expression and metabolic processes in a biofilm inhabiting diatom
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- Journal Article
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- open access
SQANTI : extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification
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- Journal Article
- A2
- open access
Draft genome assembly of the sheep scab mite, Psoroptes ovis
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- Journal Article
- A1
- open access
Fine-mapping of prostate cancer susceptibility loci in a large meta-analysis identifies candidate causal variants
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Clinical assessment and comparison of annotation algorithms in high-density mapping of regular atrial tachycardias
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Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence
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- Journal Article
- A2
- open access
Notes-portfolio
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SpliceRover : interpretable convolutional neural networks for improved splice site prediction
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- Journal Article
- A2
- open access
Some notes on Ivana Müller's Notes-project (2018)
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Mutations in two large pedigrees highlight the role of ZNF711 in X-linked intellectual disability
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Global and regional dissemination and evolution of Burkholderia pseudomallei
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- Journal Article
- A1
- open access
A new reference genome assembly for the microcrustacean Daphnia pulex
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New EST-SSR markers reveal strong genetic differentiation in native and introduced populations of the mealybug destroyer Cryptolaemus montrouzieri
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- Journal Article
- A1
- open access
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi
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Pan-cancer transcriptomic analysis associates long non-coding RNAs with key mutational driver events
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- Journal Article
- A1
- open access
Are we there yet? : reliably estimating the completeness of plant genome sequences
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- Journal Article
- A2
- open access
MDMA : un modèle pour l’identification et l’annotation des marqueurs discursifs 'potentiels' en contexte
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- Journal Article
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Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda)
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- Journal Article
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The plant genome integrative explorer resource : PlantGenIE.org
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- Journal Article
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Genome sequence of Ensifer arboris strain LMG 14919T: a microsymbiont of the legume Prosopis chilensis growing in Kosti, Sudan
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miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns
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- Journal Article
- A1
- open access
Effect of bodily fluids from honey bee (Apis mellifera) larvae on growth and genome-wide transcriptional response of the causal agent of American Foulbrood disease (Paenibacillus larvae)
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- Conference Paper
- C1
- open access
Influence of weak labels for emotion recognition of tweets
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- Journal Article
- A1
- open access
Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557T
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Rapid genetic adaptation precedes the spread of an exotic plant species
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- Journal Article
- A1
- open access
The grapevine gene nomenclature system
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- Journal Article
- A1
- open access
Fine-grained Dutch named entity recognition
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- Journal Article
- A1
- open access
Large-scale event extraction from literature with multi-level gene normalization
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- Journal Article
- A1
- open access
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions
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- Journal Article
- A1
- open access
Analysis of the olive fruit fly Bactrocera oleae transcriptome and phylogenetic classification of the major detoxification gene families
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Extending brat, an online annotation tool
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- Journal Article
- A1
- open access
Genome sequence of the Lebeckia ambigua-nodulating 'Burkholderia sprentiae' strain WSM5005T
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- Journal Article
- A1
- open access
Genome sequence of the Ornithopus/Lupinus-nodulating Bradyrhizobium sp. strain WSM471
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- Journal Article
- A1
- open access
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943
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- Journal Article
- A1
- open access
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565
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- Journal Article
- A1
- open access
Genome sequence of the Trifolium rueppellianum-nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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- Journal Article
- A1
- open access
Genome sequence of the South American clover-nodulating Rhizobium leguminosarum bv. trifolii strain WSM597