Ghent University Academic Bibliography

Show Sort by

Your filters: cql: author exact F99A640E-F0ED-11E1-A9DE-61C894A0A6B4

Add to list
- Journal Article
- A1
Human gut microbiota stratified by (+)-catechin metabolism dynamics reveals colon region-dependent metabolic profile

Qiqiong Li (UGent) , Jan Stautemas (UGent) , Stanley Omondi Onyango (UGent) , Marjan De Mey (UGent) , Dries Duchi (UGent) , Emmy Tuenter, Nina Hermans, Patrick Calders (UGent) and Tom Van de Wiele (UGent)

(2023) FOOD CHEMISTRY. 408.
Add to list
- Conference Paper
- C3
High-throughput in vivo screening of novel prokaryotic, metabolite-responsive transcription factors for biosensor development

Amber Bernauw, Indra Bervoets, Andries Peeters (UGent) , Brecht De Paepe (UGent) , Marjan De Mey (UGent) and Eveline Peeters

(2023) Annual Symposium of the Belgian Society for Microbiology, Abstracts.
Add to list
- Journal Article
- A1
- open access
Controlled processivity in glycosyltransferases : a way to expand the enzymatic toolbox

Chiara Guidi (UGent) , Xevi Biarnés, Antoni Planas and Marjan De Mey (UGent)

(2023) BIOTECHNOLOGY ADVANCES. 63.
Add to list
- Conference Paper
- C3
Exploiting the potential of biomaterials and engineered living materials via co-cultivation and arts

Béné Amery (UGent) and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
A universal and orthogonal gene expression system enabling standardized translation initiation across the bacterial domain

Lien De Wannemaeker (UGent) , Jo Maertens, Bervoets Indra and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Journal Article
- A1
- open access
Dynamic feedback regulation for efficient membrane protein production using a small RNA-based genetic circuit in Escherichia coli

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Jasmine De Baets (UGent) , Wouter Demeester (UGent) , Jo Maertens (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2022) MICROBIAL CELL FACTORIES. 21(1).
Add to list
- Conference Paper
- C3
- open access
Metabolomics to uncover stressors in amino sugar-P stress

Sofie Snoeck (UGent) , Chiara Guidi (UGent) , Tomek Diederen, Nicola Zamboni and Marjan De Mey (UGent)

(2022) National Symposium for Applied Biological Sciences, 26th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Unlocking the potential of chitin-rich waste for the production of specialty sugars

Sofie Snoeck (UGent) , Chiara Guidi (UGent) , Tomek Diederen, Nicola Zamboni and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
Filling the void : high-throughput development and characterization of transcription-factor based biosensors

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Antoni Planas and Marjan De Mey (UGent)

(2022) National Symposium for Applied Biological Sciences, 26th, Abstracts.
Add to list
- Conference Paper
- C3
High-throughput development and characterization of transcription-factor based biosensors

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Antoni Planas and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
Microbial chitooligosaccharide production for responsible and resilient agricultural practices

Chiara Guidi (UGent) , Xevi Biarnés, Antoni Planas and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
B-COS : key to resilient plants, animals and people

Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2022) Annual Meeting Annual Meeting of EAAP, 73rd, Abstracts.
Add to list
- Journal Article
- A1
- open access
The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Anton De Spiegeleer (UGent) , Evelien Wynendaele (UGent) , Amélie Descamps (UGent) , Nathan Debunne (UGent) , Bart Braeckman (UGent) , Marjan De Mey (UGent) , Julie Coudenys (UGent) , Liesbeth Crombez (UGent) , Frederick Verbeke (UGent) , Yorick Janssens (UGent) , et al.

(2022) CLINICAL AND TRANSLATIONAL MEDICINE. 12(10).
Add to list
- Journal Article
- A1
Unlocking the bacterial domain for industrial biotechnology applications using universal parts and tools

Lien De Wannemaeker (UGent) , Indra Bervoets and Marjan De Mey (UGent)

(2022) BIOTECHNOLOGY ADVANCES. 60.
Add to list
- Conference Paper
- C3
Towards industrial competitiveness of designer cellulosomes using the VersaTile technique

Babette Lamote (UGent) , Emma Cremelie (UGent) , Julie Vanderstraeten (UGent) , Maria João de Carvalho Maurício da Fonseca (UGent) , Marjan De Mey (UGent) and Yves Briers (UGent)

(2022) International Conference on Renewable Resources & Biorefineries, 18th, Abstracts.
Add to list
- Conference Paper
- C3
B-COS : key to resilient plants, animals and people

Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2022) BIOKET, Abstracts.
Add to list
- Journal Article
- A1
- open access
The donor-dependent and colon-region-dependent metabolism of (+)-catechin by colonic microbiota in the simulator of the human intestinal microbial ecosystem

Qiqiong Li (UGent) , Florence Van Herreweghen (UGent) , Marjan De Mey (UGent) , Geert Goeminne (UGent) and Tom Van de Wiele (UGent)

(2022) MOLECULES. 27(1).
Add to list
- Journal Article
- A1
Engineering transcriptional regulation in Escherichia coli using an archaeal TetR-family transcription factor

David Sybers, Amber Joka Bernauw, Diala El Masri, Hassan Ramadan Maklad, Daniel Charlier, Marjan De Mey (UGent) , Indra Bervoets and Eveline Peeters

(2022) GENE. 809.
Add to list
- Book Chapter
ProD : a tool for predictive design of tailored promoters in Escherichia coli

Friederike Mey (UGent) , Jim Clauwaert (UGent) , Maarten Van Brempt, Michiel Stock (UGent) , Jo Maertens (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2022) Prokaryotic gene regulation : methods and protocols. In Methods in Molecular Biology 2516. p.51-59
Add to list
- Conference Paper
- C3
- open access
Scaffolding for product yield maximization of fine chemicals in microbial cell factories

Marte Elias (UGent) , Babette Lamote (UGent) , Julie Vanderstraeten (UGent) , Brecht De Paepe (UGent) , Marjan De Mey (UGent) and Yves Briers (UGent)

(2022) Biorefine Conference 2022, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Scaffolding for product yield maximization of fine chemicals in microbial cell factories

Marte Elias (UGent) , Babette Lamote (UGent) , Julie Vanderstraeten (UGent) , Brecht De Paepe (UGent) , Marjan De Mey (UGent) and Yves Briers (UGent)

(2022) International Conference on Renewable Resources & Biorefineries, 18th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
BactoHealing : a novel interpretation of the concept of healing by interweaving science, philosophy and art

Christina Stadlbauer (UGent) , Marjan De Mey (UGent) and Leni van Goidsenhoven

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Unlocking the potential of non-model bacteria : a cross-bacterial gene expression toolbox

Cara Deal (UGent) , Lien De Wannemaeker (UGent) , Brecht De Paepe (UGent) , Antoni Planas and Marjan De Mey (UGent)

(2022) National Symposium for Applied Biological Sciences, 26th, Abstracts.
Add to list
- Conference Paper
- C3
Exploring the potential of fungal biomaterials via cocultivation strategies

Béné Amery (UGent) , Christina Stadlbauer (UGent) and Marjan De Mey (UGent)

(2022) National Symposium for Applied Biological Sciences, 26th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
A universal and orthogonal translation initiation module enabling standardized gene expression across the bacterial domain

Lien De Wannemaeker (UGent) , Jo Maertens (UGent) , Indra Bervoets and Marjan De Mey (UGent)

(2022) Innovation for Biomanufacturing, Abstracts.
Add to list
- Journal Article
- A1
In vitro microbial metabolism of (+)-catechin reveals fast and slow converters with individual-specific microbial and metabolite markers

Qiqiong Li (UGent) , Florence Van Herreweghen (UGent) , Stanley Omondi Onyango (UGent) , Marjan De Mey (UGent) and Tom Van de Wiele (UGent)

(2022) JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY. 70(34). p.10405-10416
Add to list
- Conference Paper
- C3
- open access
Precision fermentation for reliable, resilient and responsible agricultural practices

Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2022) International Conference on Renewable Resources & Biorefineries, 18th, Abstracts.
Add to list
- Journal Article
- A1
- open access
Biosensor-driven, model-based optimization of the orthogonally expressed naringenin biosynthesis pathway

Maarten Van Brempt, Andries Peeters (UGent) , Dries Duchi (UGent) , Lien De Wannemaeker (UGent) , Jo Maertens (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2022) MICROBIAL CELL FACTORIES. 21(1).
Add to list
- Conference Paper
- C3
New synthetic biology tools for the thermoacidophilic Archaeon Sulfolobus acidocaldarius

Andries Peeters (UGent) , Pauline Pijpstra, David Sybers, Brecht De Paepe (UGent) , Eveline Peeters and Marjan De Mey (UGent)

(2022) National Symposium for Applied Biological Sciences, 26th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

Andries Peeters (UGent) , Pauline Pijpstra, David Sybers, Brecht De Paepe (UGent) , Eveline Peeters and Marjan De Mey (UGent)

(2022) International Congress on Extremophiles, 13th, Abstracts.
Add to list
- Conference Paper
- C3
SynBio extreme : expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

Andries Peeters (UGent) , Pauline Pijpstra, David Sybers, Brecht De Paepe (UGent) , Eveline Peeters and Marjan De Mey (UGent)

(2022) Applied Synthetic Biology in Europe, 6th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Tuning automated switches to uncouple growth and production in Escherichia coli

Jasmine De Baets (UGent) , Brecht De Paepe (UGent) and Marjan De Mey (UGent)

(2021) Genome Engineering and Synthetic Biology, 4th, Abstracts.
Add to list
- Miscellaneous
- open access
The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Friederike Mey (UGent) , Jim Clauwaert (UGent) , Kirsten Van Huffel (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2021)
Add to list
- Journal Article
- A1
Improving the performance of machine learning models for biotechnology : the quest for deus ex machina

Friederike Mey (UGent) , Jim Clauwaert (UGent) , Kirsten Van Huffel (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2021) BIOTECHNOLOGY ADVANCES. 53.
Add to list
- Conference Paper
- C3
- open access
Omics versus stress: Relieving microbial cells from amino sugar-P stress

Sofie Snoeck (UGent) , Chiara Guidi (UGent) , Nicola Zamboni and Marjan De Mey (UGent)

(2021) Genome Engineering and Synthetic Biology, 4th, Abstracts.
Add to list
- Conference Paper
- C3
Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2021) Knowledge for growth, Abstracts.
Add to list
- Conference Paper
- C3
Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Chiara Guidi (UGent) and Marjan De Mey (UGent)

(2021) Pitch Perfect and boost the European Bioeconomy.
Add to list
- Conference Paper
- C3
- open access
Expanding the transcriptional toolbox of the Crenarchaeon Sulfolobus acidocaldarius

Andries Peeters (UGent) , Pauline Pijpstra, David Sybers, Brecht De Paepe (UGent) , Eveline Peeters and Marjan De Mey (UGent)

(2021) Genome Engineering and Synthetic Biology, 4th, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Merging metabolic engineering and synthetic biology for the development of microbial cell factories

Marjan De Mey (UGent)

(2020) Living Materials 2020, Abstracts.
Add to list
- Journal Article
- A1
Mapping and refactoring pathway control through metabolic and protein engineering : the hexosamine biosynthesis pathway

Pieter Coussement (UGent) , David Bauwens, Gert Peters (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2020) BIOTECHNOLOGY ADVANCES. 40.
Add to list
- Journal Article
- A1
Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Nuria Orive-Milla, Tom Delmulle (UGent) , Marjan De Mey (UGent) , Magda Faijes and Antoni Planas

(2020) METABOLIC ENGINEERING. 61. p.106-119
Add to list
- Journal Article
- A1
- open access
Predictive design of sigma factor-specific promoters

Maarten Van Brempt, Jim Clauwaert (UGent) , Friederike Mey (UGent) , Michiel Stock (UGent) , Jo Maertens (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2020) NATURE COMMUNICATIONS. 11(1).
Add to list
- Conference Paper
- C3
- open access
Stress, the real bottleneck of industrial biotechnology

Sofie Snoeck (UGent) , Nicola Zamboni and Marjan De Mey (UGent)

(2020) Microbial Stress 2020, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Understanding the role of stress in synthetic biology

Sofie Snoeck (UGent) , Nicola Zamboni and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
- open access
Synthetic biology tools for the efficient and functional expression of membrane proteins

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Jasmine De Baets (UGent) , Dries Duchi (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
Unlocking the bacterial domain for industrial biotechnology applications using orthogonal parts and tools

Lien De Wannemaeker (UGent) , Monica Texido, Béné Amery (UGent) , Jo Maertens (UGent) , Indra Bervoets and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
- open access
Expanding the biosensor horizon

Wouter Demeester (UGent) , Brecht De Paepe (UGent) , Antoni Planas and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Friederike Mey (UGent) , Jim Clauwaert (UGent) , Kirsten Van Huffel (UGent) , Willem Waegeman (UGent) and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
Countering inner-membrane stress for metabolic engineering applications

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Wouter Demeester (UGent) , Jasmine De Baets (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2020) 5th Applied Synthetic Biology in Europe meeting (ASBE V), Abstracts.
Add to list
- Conference Paper
- C3
- open access
Evaluating inner-membrane stress in E. coli for overexpression of functional membrane proteins

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Wouter Demeester (UGent) , Jasmine De Baets (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2020) Microbial Stress 2020, Abstracts.
Add to list
- Journal Article
- A1
- open access
Modulating transcription through development of semi-synthetic yeast core promoters

Thomas Decoene, Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2019) PLOS ONE. 14(11).
Add to list
- Conference Paper
- C3
Hacking translation : development of orthogonal ribosomes and 5' UTRs allowing standardized gene expression across the bacterial domain

Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Emerging Applications of Microbes, Posters.
Add to list
- Conference Paper
- C3
Development of microbial cell factories for the production of chito-oligosaccharides

David Bauwens, Sofie Snoeck, Chiara Guidi (UGent) , Dries Duchi (UGent) , Brecht De Paepe (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Applied Biological Sciences, 24th National symposium, Posters.
Add to list
- Miscellaneous
Editorial overview: Tissue, cell and pathway engineering

Eveline Peeters and Marjan De Mey (UGent)

(2019) CURRENT OPINION IN BIOTECHNOLOGY. 59. p.III-V
Add to list
- Conference Paper
- C3
- open access
Integrating synthetic biology and metabolic engineering for the microbial production of naringenin

Marjan De Mey (UGent)

(2019) BioSynSys/MaxSynBio/SynBio, Symposium on Synthetic and Systemic Biology , Abstracts. p.14-14
Add to list
- Conference Paper
- C3
- open access
An orthogonal synthetic biology toolbox for the optimisation of microbial cell factories

Maarten Van Brempt, Andries Peeters (UGent) , Lien De Wannemaeker (UGent) , Dries Duchi (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Emerging Applications in Microbes, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Development of a microbial technology platform for the synthesis of functional glycans

David Bauwens, Chiara Guidi (UGent) , Dries Duchi (UGent) , Wouter Van Bellegem (UGent) , Sofie Snoeck (UGent) , Pieter Coussement (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Synthetic Biology, Gordon Research Conference, Abstracts.
Add to list
- Conference Paper
- C3
Development of a cross-bacterial expression system : the orthogonal translational module

Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Applied Biological Sciences, 24th National symposium, Posters.
Add to list
- Conference Paper
- C3
Repurposing inner-membrane stress for metabolic engineering applications

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Wouter Demeester (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Applied Biological Sciences, 24th National symposium, Posters.
Add to list
- Journal Article
- A1
- open access
Chimeric LysR-type transcriptional biosensors for customizing ligand specificity profiles toward flavonoids

Brecht De Paepe (UGent) , Jo Maertens (UGent) , Bartel Vanholme (UGent) and Marjan De Mey (UGent)

(2019) ACS SYNTHETIC BIOLOGY. 8(2). p.318-331
Add to list
- Book Chapter
Combinatorial assembly of multigene pathways by combining single-strand assembly with Golden Gate Assembly

David Bauwens, Pieter Coussement (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Microbial metabolic engineering methods and protocols. In Methods in Molecular Biology 1927. p.111-123
Add to list
- Conference Paper
- C3
Countering membrane stress for the optimisation of microbial cell factories

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Wouter Demeester (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2019) Emerging Applications in Microbes, Abstracts.
Add to list
- Journal Article
- A1
- open access
A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra Bervoets, Maarten Van Brempt, Katleen Van Nerom, Bob Van Hove, Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2018) NUCLEIC ACIDS RESEARCH. 46(4). p.2133-2144
Add to list
- Conference Paper
- C3
A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra Bervoets, Maarten Van Brempt, Bob Van Hove, Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2018) Genome Engineering and Synthetic Biology, 3rd Edition, Program book.
Add to list
- Journal Article
- A1
Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Thomas Decoene, Gert Peters (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2018) ACS SYNTHETIC BIOLOGY. 7(2). p.622-634
Add to list
- Journal Article
- A1
Development of N-acetylneuraminic acid responsive biosensors based on the transcriptional regulator NanR

Gert Peters (UGent) , Brecht De Paepe (UGent) , Lien De Wannemaeker (UGent) , Dries Duchi (UGent) , Jo Maertens (UGent) , Jeroen Lammertyn and Marjan De Mey (UGent)

(2018) BIOTECHNOLOGY AND BIOENGINEERING. 115(7). p.1855-1865
Add to list
- Journal Article
- A1
Standardization in synthetic biology : an engineering discipline coming of age

Thomas Decoene, Brecht De Paepe (UGent) , Jo Maertens (UGent) , Pieter Coussement (UGent) , Gert Peters (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2018) CRITICAL REVIEWS IN BIOTECHNOLOGY. 38(5). p.647-656
Add to list
- Journal Article
- A1
Challenges in the microbial production of flavonoids

Tom Delmulle (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2018) PHYTOCHEMISTRY REVIEWS. 17(2). p.229-247
Add to list
- Conference Paper
- C3
- open access
A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Maarten Van Brempt, Indra Bervoets, Katleen Van Nerom, Bob Van Hove, Jo Maertens (UGent) , Daniel Charlier and Marjan De Mey (UGent)

(2018) Knowledge for Growth, Abstracts.
Add to list
- Conference Paper
- C3
Towards orthogonal and standardized translation across the bacterial domain

Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2018) 4th Applied Synthetic Biology in Europe : conference program book. p.74-74
Add to list
- Conference Paper
- C3
Evaluating inner-membrane stress in E. coli

Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2018) 4th Applied Synthetic Biology in Europe : conference program book. p.79-79
Add to list
- Conference Paper
- C3
- open access
A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Maarten Van Brempt, Indra Bervoets, Katleen Van Nerom, Bob Van Hove, Jo Maertens (UGent) , Daniel Charlier and Marjan De Mey (UGent)

(2018) SEED : Synthetic Biology: Engineering, Evolution and Design, Conference program book.
Add to list
- Journal Article
- A1
Modularization and response curve engineering of a naringenin-responsive transcriptional biosensor

Brecht De Paepe (UGent) , Jo Maertens (UGent) , Bartel Vanholme (UGent) and Marjan De Mey (UGent)

(2018) ACS SYNTHETIC BIOLOGY. 7(5). p.1303-1314
Add to list
- Conference Paper
- C3
- open access
Yeast organelle engineering : a flavonoid case-study

Tom Delmulle (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2018) 2018 ME-12 conference program book.
Add to list
- Conference Paper
- C3
- open access
Direct combinatorial pathway optimization

David Bauwens, Pieter Coussement (UGent) , Marjan De Mey (UGent) and Jo Maertens (UGent)

(2018) SEED : Synthetic Biology: Engineering, Evolution and Design, Conference program book.
Add to list
- Journal Article
- A1
- open access
Exploring of the feature space of de novo developed post-transcriptional riboregulators

Gert Peters (UGent) , Jo Maertens (UGent) , Jeroen Lammertyn and Marjan De Mey (UGent)

(2018) PLOS COMPUTATIONAL BIOLOGY. 14(8).
Add to list
- Journal Article
- A1
Heterologous expression and characterization of plant taxadiene-5α-hydroxylase (CYP725A4) in Escherichia coli

John Edward Rouck, Bradley Walters Biggs, Amogh Kambalyal, William R Arnold, Marjan De Mey (UGent) , Parayil Kumaran Ajikumar and Aditi Das

(2017) PROTEIN EXPRESSION AND PURIFICATION. 132. p.60-67
Add to list
- Conference Paper
- C3
A sigma factor toolbox enables orthogonal gene expression for modular control of complex pathways in Escherichia coli

Indra Bervoets, Maarten Van Brempt, Bob Van Hove, Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2017) Synthetic Biology, Gordon research conferences, Abstracts.
Add to list
- Journal Article
- A1
Recursive DNA assembly using protected oligonucleotide duplex assisted cloning (PODAC)

Bob Van Hove, Chiara Guidi (UGent) , Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2017) ACS SYNTHETIC BIOLOGY. 6(6). p.943-949
Add to list
- Journal Article
- A1
Direct combinatorial pathway optimization

Pieter Coussement (UGent) , David Bauwens, Jo Maertens (UGent) and Marjan De Mey (UGent)

(2017) ACS SYNTHETIC BIOLOGY. 6(2). p.224-232
Add to list
- Conference Paper
- C3
- open access
Metabolic Engineering @ CSB : platform tools and technologies for the production of complex metabolites

David Bauwens, Wouter Van Bellegem (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2017) ICBACC & ICCSS-2017, Abstracts.
Add to list
- Conference Paper
- C3
Development of microbial cell factories for the production of chito-oligosaccharides

David Bauwens, Chiara Guidi (UGent) , Wouter Van Bellegem (UGent) , Dries Duchi (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2017) EUROCARB 2017 scientific program and abstract book.
Add to list
- Conference Paper
- C3
Metabolic and protein engineering strategies for glycolipid synthesis

Nuria Orive, Marjan De Mey (UGent) , Magda Faijes and Antoni Planas

(2017) EUROCARB 2017 scientific program and abstract book.
Add to list
- Conference Paper
- C3
- open access
Microbial cell factories for the production of specialised plant metabolites

Frederik De Bruyn (UGent) , Maarten Van Brempt, Brecht De Paepe (UGent) , Jo Maertens (UGent) , David Bauwens, Pieter Coussement (UGent) , Chin Giaw Lim, Bradley Walter Biggs, Ryan Philippe, Parayil Kumaran Ajikumar, et al.

(2017) Conference program book of ICPM, PCWB and Terpnet 2017. p.25-25
Add to list
- Conference Paper
- C3
- open access
Towards predictable 5’-UTRs in Saccharomyces cerevisiae

Thomas Decoene, Gert Peters (UGent) , Sofie De Maeseneire (UGent) and Marjan De Mey (UGent)

(2017) Synthetic Biology, 7th International meeting, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Co-localization of enzymes for improved production of flavonoids in Saccharomyces cerevisiae

Tom Delmulle (UGent) , Marjan De Mey (UGent) and Sofie De Maeseneire (UGent)

(2017) Yeast, 33rd International specialised symposium, Abstracts.
Add to list
- Conference Paper
- C3
- open access
Tailor-made transcriptional biosensors for optimizing microbial cell factories

Brecht De Paepe (UGent) , Jo Maertens (UGent) , Bartel Vanholme (UGent) and Marjan De Mey (UGent)

(2017) Synthetic Biology, 7th International meeting, Abstracts.
Add to list
- Journal Article
- A1
Tailor-made transcriptional biosensors for optimizing microbial cell factories

Brecht De Paepe (UGent) , Gert Peters (UGent) , Pieter Coussement (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2017) JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY. 44(4). p.623-645
Add to list
- Conference Paper
- C3
- open access
The use of shallow convolutional neural networks in predicting promotor strength in Eschericha coli

Jim Clauwaert (UGent) , Michiel Stock (UGent) , Marjan De Mey (UGent) and Willem Waegeman (UGent)

(2017) Machine Learning, 26th Belgian-Dutch conference, Abstracts.
Add to list
- Conference Paper
- C3
Orthogonal gene expression : promoter libraries linked to different sigma factors which are orthogonal between each other and towards the host

Indra Bervoets, Maarten Van Brempt, Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2016) SEED : Synthetic Biology: Engineering, Evolution and Design, Conference program book.
Add to list
- Conference Paper
- C3
Orthogonal gene expression : promoter libraries linked to different sigma factors which are orthogonal between each other and towards the host

Indra Bervoets, Maarten Van Brempt, Jo Maertens (UGent) , Marjan De Mey (UGent) and Daniel Charlier

(2016) Belgian Society for Microbiology, Meeting abstracts. p.23-23
Add to list
- Book Chapter
Programming biology: expanding the toolset for the engineering of transcription

Bob Van Hove, Aaron M Love, Parayil Kumaran Ajikumar and Marjan De Mey (UGent)

(2016) Synthetic biology. p.1-64
Add to list
- Book Chapter
Novel DNA and RNA elements

Julia Pitzer, Bob Van Hove, Aaron M Love, Parayil Kumaran Ajikumar, Marjan De Mey (UGent) and Anton Glieder

(2016) Synthetic biology. p.65-99
Add to list
- Journal Article
- A1
Efficient utilization of pentoses for bioproduction of the renewable two-carbon compounds ethylene glycol and glycolate

Brian Pereira, Zheng-Jun Li, Marjan De Mey (UGent) , Chin Giaw Lim, Haoran Zhang, Claude Hoeltgen and Gregory Stephanopoulos

(2016) METABOLIC ENGINEERING. 34. p.80-87
Add to list
- Journal Article
- A1
Comparative fluxome and metabolome analysis for overproduction of succinate in Escherichia coli

Hilal Taymaz-Nikerel, Marjan De Mey (UGent) , Gino Baart (UGent) , Jo Maertens (UGent) , Maria Remedios Foulquié-Moreno, Daniel Charlier, Joseph J Heijnen and Walter M van Gulik

(2016) BIOTECHNOLOGY AND BIOENGINEERING. 113(4). p.817-829
Add to list
- Journal Article
- A1
Overcoming heterologous protein interdependency to optimize P450-mediated Taxol precursor synthesis in Escherichia coli

Bradley Walters Biggs, Chin Giaw Lin, Kristen Saglinani, Smriti Shankar, Gregory Stephanopoulos, Marjan De Mey (UGent) and Parayil Kumaran Ajikumar

(2016) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 113(12). p.3209-3214
Add to list
- Journal Article
- A1
Orthogonal assays clarify the oxidative biochemistry of Taxol P450 CYP725A4

Bradley Walters Biggs, John Edward Rouck, Amogh Kambalyal, William Arnold, Chin Giaw Lim, Marjan De Mey (UGent) , Mark O'Neil-Johnson, Courtney M Starks, Aditi Das and Parayil Kumaran Ajikumar

(2016) ACS CHEMICAL BIOLOGY. 11(5). p.1445-1451
Add to list
- Conference Paper
- C3
- open access
Constructing artificial CRISPR guide RNA arrays using methylated oligonucleotides

Bob Van Hove, Lien De Wannemaeker (UGent) , Jo Maertens (UGent) and Marjan De Mey (UGent)

(2016) Applied Synthetic Biology in Europe, 3rd Meeting, Abstract. p.62-62
Add to list
- Journal Article
- A1
Engineering a novel biosynthetic pathway in Escherichia coli for production of renewable ethylene glycol

Brian Pereira, Haoran Zhang, Marjan De Mey (UGent) , Chin Giaw Lim, Zheng-Jun Li and Gregory Stephanopoulos

(2016) BIOTECHNOLOGY AND BIOENGINEERING. 113(2). p.376-383
Add to list
- Conference Paper
- C3
Automated de novo design of ligand responsive RNA devices

Gert Peters (UGent) , Jo Maertens (UGent) , Jeroen Lammertyn and Marjan De Mey (UGent)

(2016) NEW BIOTECHNOLOGY. 33(suppl.). p.S14-S14

Human gut microbiota stratified by (+)-catechin metabolism dynamics reveals colon region-dependent metabolic profile

High-throughput in vivo screening of novel prokaryotic, metabolite-responsive transcription factors for biosensor development

Controlled processivity in glycosyltransferases : a way to expand the enzymatic toolbox

Exploiting the potential of biomaterials and engineered living materials via co-cultivation and arts

A universal and orthogonal gene expression system enabling standardized translation initiation across the bacterial domain

Dynamic feedback regulation for efficient membrane protein production using a small RNA-based genetic circuit in Escherichia coli

Metabolomics to uncover stressors in amino sugar-P stress

Unlocking the potential of chitin-rich waste for the production of specialty sugars

Filling the void : high-throughput development and characterization of transcription-factor based biosensors

High-throughput development and characterization of transcription-factor based biosensors

Microbial chitooligosaccharide production for responsible and resilient agricultural practices

B-COS : key to resilient plants, animals and people

The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Unlocking the bacterial domain for industrial biotechnology applications using universal parts and tools

Towards industrial competitiveness of designer cellulosomes using the VersaTile technique

B-COS : key to resilient plants, animals and people

The donor-dependent and colon-region-dependent metabolism of (+)-catechin by colonic microbiota in the simulator of the human intestinal microbial ecosystem

Engineering transcriptional regulation in Escherichia coli using an archaeal TetR-family transcription factor

ProD : a tool for predictive design of tailored promoters in Escherichia coli

Scaffolding for product yield maximization of fine chemicals in microbial cell factories

Scaffolding for product yield maximization of fine chemicals in microbial cell factories

BactoHealing : a novel interpretation of the concept of healing by interweaving science, philosophy and art

Unlocking the potential of non-model bacteria : a cross-bacterial gene expression toolbox

Exploring the potential of fungal biomaterials via cocultivation strategies

A universal and orthogonal translation initiation module enabling standardized gene expression across the bacterial domain

In vitro microbial metabolism of (+)-catechin reveals fast and slow converters with individual-specific microbial and metabolite markers

Precision fermentation for reliable, resilient and responsible agricultural practices

Biosensor-driven, model-based optimization of the orthogonally expressed naringenin biosynthesis pathway

New synthetic biology tools for the thermoacidophilic Archaeon Sulfolobus acidocaldarius

Expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

SynBio extreme : expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

Tuning automated switches to uncouple growth and production in Escherichia coli

The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Improving the performance of machine learning models for biotechnology : the quest for deus ex machina

Omics versus stress: Relieving microbial cells from amino sugar-P stress

Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Expanding the transcriptional toolbox of the Crenarchaeon Sulfolobus acidocaldarius

Merging metabolic engineering and synthetic biology for the development of microbial cell factories

Mapping and refactoring pathway control through metabolic and protein engineering : the hexosamine biosynthesis pathway

Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Predictive design of sigma factor-specific promoters

Stress, the real bottleneck of industrial biotechnology

Understanding the role of stress in synthetic biology

Synthetic biology tools for the efficient and functional expression of membrane proteins

Unlocking the bacterial domain for industrial biotechnology applications using orthogonal parts and tools

Expanding the biosensor horizon

The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Countering inner-membrane stress for metabolic engineering applications

Evaluating inner-membrane stress in E. coli for overexpression of functional membrane proteins

Modulating transcription through development of semi-synthetic yeast core promoters

Hacking translation : development of orthogonal ribosomes and 5' UTRs allowing standardized gene expression across the bacterial domain

Development of microbial cell factories for the production of chito-oligosaccharides

Editorial overview: Tissue, cell and pathway engineering

Integrating synthetic biology and metabolic engineering for the microbial production of naringenin

An orthogonal synthetic biology toolbox for the optimisation of microbial cell factories

Development of a microbial technology platform for the synthesis of functional glycans

Development of a cross-bacterial expression system : the orthogonal translational module

Repurposing inner-membrane stress for metabolic engineering applications

Chimeric LysR-type transcriptional biosensors for customizing ligand specificity profiles toward flavonoids

Combinatorial assembly of multigene pathways by combining single-strand assembly with Golden Gate Assembly

Countering membrane stress for the optimisation of microbial cell factories

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Development of N-acetylneuraminic acid responsive biosensors based on the transcriptional regulator NanR

Standardization in synthetic biology : an engineering discipline coming of age

Challenges in the microbial production of flavonoids

A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Towards orthogonal and standardized translation across the bacterial domain

Evaluating inner-membrane stress in E. coli

A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Modularization and response curve engineering of a naringenin-responsive transcriptional biosensor

Yeast organelle engineering : a flavonoid case-study

Direct combinatorial pathway optimization

Exploring of the feature space of de novo developed post-transcriptional riboregulators

Heterologous expression and characterization of plant taxadiene-5α-hydroxylase (CYP725A4) in Escherichia coli

A sigma factor toolbox enables orthogonal gene expression for modular control of complex pathways in Escherichia coli

Recursive DNA assembly using protected oligonucleotide duplex assisted cloning (PODAC)

Direct combinatorial pathway optimization