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- Journal Article
- A1
- open access
Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production
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- Journal Article
- A1
- open access
Microbial ecology and metabolite dynamics of backslopped triticale sourdough productions and the impact of scale
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- Journal Article
- A1
- open access
The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing
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- Miscellaneous
- open access
Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction
(2024) -
A comparative genomic analysis of Fructobacillus evanidus sp. nov. from bumble bees
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Volatile organic compounds associated with spoilage bacteria isolated from blue mussels (Mytilus edulis) packed under modified atmospheres
(2024) -
- Journal Article
- A1
- open access
Novel Ralstonia species from human infections : improved matrix-assisted laser desorption/ionization time-of-flight mass spectrometry-based identification and analysis of antimicrobial resistance patterns
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- Journal Article
- A1
- open access
Eupransor demetentiae gen. nov., sp. nov., a novel fructophilic lactic acid bacterium from bumble bees
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- Journal Article
- A2
- open access
A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont
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Aristophania vespae gen. nov., sp. nov., isolated from wasps, is related to Bombella and Oecophyllibacter, isolated from bees and ants
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- Journal Article
- A1
- open access
Convivina is a specialised core gut symbiont of the invasive hornet Vespa velutina
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- Journal Article
- A1
- open access
Microbiota and pathogens in an invasive bee : Megachile sculpturalis from native and invaded regions
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- Journal Article
- A1
- open access
The GEN-ERA toolbox : unified and reproducible workflows for research in microbial genomics
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Cyclitol metabolism is a central feature of Burkholderia leaf symbionts
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- Journal Article
- A1
- open access
Brytella acorum gen. nov., sp. nov., a novel acetic acid bacterium from sour beverages
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- Journal Article
- A1
- open access
Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria
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- Journal Article
- A1
- open access
The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms
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- Journal Article
- A1
- open access
European bee diversity : taxonomic and phylogenetic patterns
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- Journal Article
- A1
- open access
New insights into the role of key microorganisms and wooden barrels during lambic beer fermentation and maturation
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Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax
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- Journal Article
- A1
- open access
A case study of the diet-microbiota-parasite interplay in bumble bees
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In vitro susceptibility of Achromobacter species isolated from cystic fibrosis patients : a 6-year survey
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- Journal Article
- A1
- open access
Intraspecific size shifts in generalist bumblebees and flowers lead to low functional consequences
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Potential for climate change driven spatial mismatches between apple crops and their wild bee pollinators at a continental scale
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- Journal Article
- A1
- open access
Comparative genomic analysis of Periweissella and the characterization of novel motile species
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Co-cultivation enhanced microbial protein production based on autotrophic nitrogen-fixing hydrogen-oxidizing bacteria
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- Journal Article
- A1
- open access
Backslopping time, rinsing of the grains during backslopping, and incubation temperature influence the water kefir fermentation process
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- Journal Article
- A1
- open access
Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveal taxonomic and functional diversity
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- Journal Article
- A1
- open access
Ecological, environmental, and management data indicate apple production is driven by wild bee diversity and management practices
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- Journal Article
- A1
- open access
Campylobacter majalis sp. nov. and Campylobacter suis sp. nov., novel Campylobacter species isolated from porcine gastrointestinal mucosa
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In memoriam : Monique Gillis (1942 - 2022)
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Acetobacter vaccinii sp. nov., a novel acetic acid bacterium isolated from blueberry fruit (Vaccinium corymbosum L.)
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Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov. : novel aromatic compound degrading bacteria isolated from garden and forest soil samples
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Dominance of honey bees is negatively associated with wild bee diversity in commercial apple orchards regardless of management practices
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- Journal Article
- A1
- open access
Description of Pseudoclavibacter triregionum sp. nov. from human blood and Pseudoclavibacter albus comb. nov., and revised classification of the genus Pseudoclavibacter : proposal of Caespitibacter gen. nov., with Caespitibacter soli comb. nov. and Caespitibacter caeni comb. nov
(2022) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 115(4). p.461-472 -
The exploration of microbial profiles in blue mussels (Mytilus edulis) stored under different modified atmospheres
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- Journal Article
- A2
- open access
Isolation, screening, identification and optimization of culture parameters to produce gamma-aminobutyric acid by Lactiplantibacillus pentosus R13, an isolate from ruoc (fermented shrimp paste)
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- Journal Article
- A1
- open access
A comprehensive investigation into the production of gamma-aminobutyric acid by Limosilactobacillus fermentum NG16, a tuna gut isolate
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A comparative analysis of crop pollinator survey methods along a large-scale climatic gradient
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- Journal Article
- A1
- open access
Introduction to the principles and methods underlying the recovery of metagenome-assembled genomes from metagenomic data
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Isolation and identification of a Bacillus sp. from freshwater sediment displaying potent activity against bacteria and phytopathogen fungi
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Outbreak of Burkholderia contaminans endophthalmitis traced to a clinic ventilation system
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- Conference Paper
- C3
- open access
Isolation and preliminary characterisation of wild yeasts isolated from natural niches for non- and low alcoholic beer production
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- Journal Article
- A1
- open access
Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics
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- Journal Article
- A1
- open access
Signals of adaptation to agricultural stress in the genomes of two European bumblebees
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- Journal Article
- A2
- open access
Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients
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Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens
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- Journal Article
- A2
- open access
Clinical course, treatment and visual outcome of an outbreak of Burkholderia contaminans endophthalmitis following cataract surgery
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- Journal Article
- A1
- open access
Bumblebee resilience to climate change, through plastic and adaptive responses
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Impact of intraspecific variation on measurements of thermal tolerance in bumble bees
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Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere
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- Journal Article
- A1
- open access
Cutibacterium modestum and 'Propionibacterium humerusii' represent the same species that is commonly misidentified as Cutibacterium acnes
(2021) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 114(8). p.1315-1320 -
- Journal Article
- A1
- open access
Matrix-assisted laser desorption ionization–time of flight mass spectrometry for rapid detection of isolates belonging to the epidemic clones Achromobacter xylosoxidans ST137 and Achromobacter ruhlandii DES from cystic fibrosis patients
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Aliarcobacter, Halarcobacter, Malaciobacter, Pseudarcobacter and Poseidonibacter are later synonyms of Arcobacter : transfer of Poseidonibacter parvus, Poseidonibacter antarcticus, ‘Halarcobacter arenosus’, and ‘Aliarcobacter vitoriensis’ to Arcobacter as Arcobacter parvus comb. nov., Arcobacter antarcticus comb. nov., Arcobacter arenosus comb. nov. and Arcobacter vitoriensis comb. nov.
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- Journal Article
- A1
- open access
Out with the old and in with the new : time to rethink twentieth century chemotaxonomic practices in bacterial taxonomy
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Characterization of novel Gluconobacter species from fruits and fermented food products : Gluconobacter cadivus sp. nov., Gluconobacter vitians sp. nov. and Gluconobacter potus sp. nov
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- Journal Article
- A1
- open access
Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity
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- Journal Article
- A1
- open access
Paraburkholderia dioscoreae sp. nov. : a novel plant associated growth promotor
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- Journal Article
- A1
- open access
Bacterial species identification using MALDI-TOF mass spectrometry and machine learning techniques : a large-scale benchmarking study
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Gulosibacter hominis sp. nov. : a novel human microbiome bacterium that may cause opportunistic infections
(2021) ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY. 114(11). p.1841-1854 -
- Journal Article
- A1
- open access
The holobiont as a key to the adaptation and conservation of wild bees in the Anthropocene
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The bacterial diversity of raw Moroccon camel milk
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- Journal Article
- A1
- open access
The type and concentration of inoculum and substrate as well as the presence of oxygen impact the water kefir fermentation process
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- Journal Article
- A1
- open access
Network analysis based on unique spectral features enables an efficient selection of genomically diverse operational isolation units
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Entomobacter blattae gen. nov., sp. nov., a new member of the Acetobacteraceae isolated from the gut of the cockroach Gromphadorhina portentosa
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Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana
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- Journal Article
- A1
- open access
Genomic aromatic compound degradation potential of novel Paraburkholderia species : Paraburkholderia domus sp. nov., Paraburkholderia haematera sp. nov. and Paraburkholderia nemoris sp. nov.
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- Journal Article
- A1
- open access
The ever-expanding Pseudomonas genus : description of 43 new species and partition of the Pseudomonas putida group
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- Journal Article
- A1
- open access
gcType : a high-quality type strain genome database for microbial phylogenetic and functional research
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- Journal Article
- A1
- open access
Optimization of culture conditions for gamma-aminobutyric acid production by newly identified Pediococcus pentosaceus MN12 isolated from 'mam nem', a fermented fish sauce
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- Journal Article
- A2
- open access
Diagnostic approach for detection and identification of emerging enteric pathogens revisited : the (Ali)arcobacter lanthieri case
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Development of a database for the rapid and accurate routine identification of Achromobacter species by matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS)
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Gluconacetobacter dulcium sp. nov., a novel Gluconacetobacter species from sugar-rich environments
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MALDI-TOF MS insight into the biodiversity of Staka, the artisanal Cretan soured cream
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- Journal Article
- A1
- open access
Burkholderia bacteria produce multiple potentially novel molecules that inhibit carbapenem-resistant gram-negative bacterial pathogens
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Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria
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- Journal Article
- A1
- open access
Presence of the weakly pathogenic Fusarium poae in the Fusarium head blight disease complex hampers biocontrol and chemical control of the virulent Fusarium graminearum pathogen
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Identification and characterization of acid-tolerant spore-forming spoilage bacteria from acidified and low-acid pasteurized sauces
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- Journal Article
- A1
- open access
Biosynthesis of ditropolonyl sulfide, an antibacterial compound produced by Burkholderia cepacia complex strain R-12632
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- Journal Article
- A1
- open access
Burkholderia cepacia complex taxon K : where to split?
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An emended description of Arcobacter anaerophilus Sasi Jyothsna et al. 2013 : genomic and phenotypic insights
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- Journal Article
- A1
- open access
Comparative microbiomics of tephritid frugivorous pests (Diptera : Tephritidae) from the field : a tale of high variability across and within species
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- Journal Article
- A1
- open access
Roadmap for naming uncultivated archaea and bacteria
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- Journal Article
- A1
- open access
Description of Komagataeibacter melaceti sp. nov. and Komagataeibacter melomenusus sp. nov. isolated from apple cider vinegar
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A critical rebuttal of the proposed division of the genus Arcobacter into six genera using comparative genomic, phylogenetic, and phenotypic criteria
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Micromonospora fluminis sp. nov., isolated from mountain river sediment
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Nocardiopsis dassonvillei subsp. crassaminis subsp. nov., isolated from freshwater sediment, and reappraisal of Nocardiopsis alborubida Grund and Kroppenstedt 1990 emend. Nouioui et al. 2018
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Novel acetic acid bacteria from cider fermentations : acetobacter conturbans sp. nov. and acetobacter fallax sp. nov
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- Journal Article
- A1
- open access
PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
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- Journal Article
- A1
- open access
Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence
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A taxonomic note on the genus Lactobacillus : description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae
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MALDI-TOF MS profiling of non-starter lactic acid bacteria from artisanal cheeses of the Greek island of Naxos
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- Miscellaneous
- open access
Genome sequence-based curation of PubMLST data challenges interspecies recombination in the Burkholderia cepacia complex
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Microbial enrichment, functional characterization and isolation from a cold seep yield piezotolerant obligate hydrocarbon degraders
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- Journal Article
- A1
- open access
Decoding the capability of Lactobacillus plantarum W1 isolated from soybean whey in producing an exopolysaccharide
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Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production
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Actinomadura roseirufa sp. nov., producer of semduramicin, a polyether ionophore
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A method for comprehensive proteomic analysis of human faecal samples to investigate gut dysbiosis in patients with cystic fibrosis
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- Journal Article
- A1
- open access
Comparative genomics of Pandoraea, a genus enriched in xenobiotic biodegradation and metabolism
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- Journal Article
- A1
- open access
Impact of sample preservation and manipulation on insect gut microbiome profiling : a test case with fruit flies (Diptera, Tephritidae)