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- Journal Article
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- open access
Virus-host coexistence in phytoplankton through the genomic lens
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- Journal Article
- A1
- open access
PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics
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Insights into the evolution of multicellularity from the sea lettuce genome
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- Journal Article
- A1
- open access
CoExpNetViz: comparative co-expression networks construction and visualization tool
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- Journal Article
- A1
- open access
PLAZA 3.0 : an access point for plant comparative genomics
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Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
(2013) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 110(8). p.2898-2903 -
pico-PLAZA, a genome database of microbial photosynthetic eukaryotes
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The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis
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- Journal Article
- A1
- open access
TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes
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Dissecting plant genomes with the PLAZA comparative genomics platform
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- Journal Article
- A1
- open access
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
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- Journal Article
- A1
- open access
i-ADHoRe 3.0 : fast and sensitive detection of genomic homology in extremely large data sets
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A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
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Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice
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- Journal Article
- A1
- open access
Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling
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- Journal Article
- A1
- open access
PLAZA : a comparative genomics resource to study gene and genome evolution in plants
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Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks
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- Journal Article
- A1
- open access
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
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The flowering world: a tale of duplications
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Unravelling cis-Regulatory Elements in the Genome of the Smallest Photosynthetic Eukaryote: Phylogenetic Footprinting in Ostreococcus
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Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis
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Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species
(2008) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 105(9). p.3427-3432 -
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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How many genes are there in plants (... and why are they there)?
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- Journal Article
- A1
- open access
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
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- Journal Article
- A1
- open access
The gain and loss of genes during 600 million years of vertebrate evolution
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- Journal Article
- A1
- open access
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
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- Journal Article
- A1
- open access
Genome-wide identification of potential plant E2F target genes
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- Journal Article
- A1
- open access
Exploring the plant transcriptome through phylogenetic profiling
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Ancient duplication of cereal genomes
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Recent developments in computational approaches for uncovering genomic homology
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Gene duplication and biased functional retention of paralogs in bacterial genomes
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Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
(2004) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 101(6). p.1638-1643 -
Building genomic profiles for uncovering segmental homology in the twilight zone
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The quest for genomic homology
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Building genomic profiles for uncovering segmental homology in the twilight zone
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Investigating ancient duplication events in the Arabidopsis genome
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Investigating ancient duplication events in the Arabidopsis genome
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Evidence that rice and other cereals are ancient aneuploids
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Detecting microcolinearity between Arabidopsis and Rice
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The hidden duplication past of Arabidopsis thaliana
(2002) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 99(21). p.13627-13632 -
The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice
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Detecting the undetectable : uncovering duplicated segments in Arabidopsis by comparison with rice.