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- Journal Article
- A1
- open access
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes
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- Miscellaneous
- open access
Critical assessment of metaproteome investigation (CAMPI) : a multi-lab comparison of established workflows
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- Journal Article
- A1
- open access
Critical Assessment of MetaProteome Investigation (CAMPI) : a multi-laboratory comparison of established workflows
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- Journal Article
- A2
- open access
gNOMO : a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms
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- Miscellaneous
- open access
gNOMO : a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms (vol 2, 10.1093/nargab/lqaa058, 2020)
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- Journal Article
- A1
- open access
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis
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- Journal Article
- A1
- open access
Survey of metaproteomics software tools for functional microbiome analysis
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Rescoring peptide-to-spectrum-matches based on predicted fragment ion intensities leads to an increased identification rate in metaproteomics
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Challenges and promise at the interface of metaproteomics and genomics : an overview of recent progress in metaproteogenomic data analysis
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- Journal Article
- A1
- open access
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
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- Journal Article
- A2
- open access
Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework
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- Journal Article
- A1
- open access
MPA Portable : a stand-alone software package for analyzing metaproteome samples on the go
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Metaproteomic data analysis at a glance : advances in computational microbial community proteomics
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- Journal Article
- A1
- open access
The impact of sequence database choice on metaproteomic results in gut microbiota studies
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Viewing the proteome : how to visualize proteomics data?
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The MetaProteomeAnalyzer : a powerful open-source software suite for metaproteomics data analysis and interpretation
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Navigating through metaproteomics data : a logbook of database searching
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Colonic metaproteomic signatures of active bacteria and the host in obesity
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DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra
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Searching for a needle in a stack of needles: challenges in metaproteomics data analysis
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ProteoCloud: a full-featured open source proteomics cloud computing pipeline
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XTandem parser: an open-source library to parse and analyse X!Tandem MS/MS search results
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jTraqX: a free, platform independent tool for isobaric tag quantitation at the protein level
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ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics