Ghent University Academic Bibliography

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Proteomics standards initiatives ProForma 2.0 unifying the encoding of proteoforms and peptidoforms

Richard D. LeDuc, Eric W. Deutsch, Pierre-Alain Binz, Ryan T. Fellers, Anthony J. Cesnik, Joshua A. Klein, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Arshika Yalavarthi, Yasset Perez-Riverol, et al.

(2021) ARXIV.
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- Journal Article
- A1
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Universal Spectrum Identifier for mass spectra

Eric W. Deutsch, Yasset Perez-Riverol, Jeremy Carver, Shin Kawano, Luis Mendoza, Tim Van Den Bossche (UGent) , Ralf Gabriels (UGent) , Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, et al.

(2021) NATURE METHODS. 18(7). p.768-770
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- Journal Article
- A1
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A proteomics sample metadata representation for multiomics integration and big data analysis

Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M. Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, et al.

(2021) NATURE COMMUNICATIONS. 12(1).
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- Conference Paper
- C3
- open access
The HUPO-PSI standardized spectral library format

Ralf Gabriels (UGent) , Nuno Bandeira, Wout Bittremieux, Jeremy J Carver, Matthew Chambers, Shin Kawano, Henry Lam, Tytus Mak, Yasset Perez-Riverol, Benjamin J Pullman, et al.

(2020) EuBIC 2020 developers' meeting.
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Expanding the use of spectral libraries in proteomics

Eric W Deutsch, Yasset Perez-Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, et al.

(2018) JOURNAL OF PROTEOME RESEARCH. 17(12). p.4051-4060
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

Juan A Vizcaino, Eric W Deutsch, Rui Wang, Attila Csordas, Florian Reisinger, Daniel Ríos, José A Dianes, Zhi Sun, Terry Farrah, Nuno Bandeira, et al.

(2014) NATURE BIOTECHNOLOGY. 32(3). p.223-226

Academic Bibliography

Proteomics standards initiatives ProForma 2.0 unifying the encoding of proteoforms and peptidoforms

Universal Spectrum Identifier for mass spectra

A proteomics sample metadata representation for multiomics integration and big data analysis

The HUPO-PSI standardized spectral library format

Expanding the use of spectral libraries in proteomics

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

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