Ghent University Academic Bibliography

Conference Paper

Development of a digital PCR TERT/TERRA quantification assay in neuroblastoma

Pinar Safari, Kimberly Verniers (UGent) , Lisa Werr, Christoph Bartenhagen, Anneleen Decock (UGent) , Bram De Wilde (UGent) , Matthias Fischer and Jo Vandesompele (UGent)

(2025)

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Miscellaneous

Deconvoluting fiber type proportions from human skeletal muscle transcriptomics and proteomics data using FibeRtypeR

Thibaux Van der Stede (UGent) , Roger Moreno-Justicia, Freek Van de Casteele (UGent) , Eline Lievens (UGent) , Alexia Van de Loock (UGent) , Jonas Vandecauter (UGent) , Peter Merseburger, Jimmy Van den Eynden (UGent) , Delphi Van Haver (UGent) , An Staes (UGent) , et al.

(2025) BioRxiv.

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Miscellaneous

Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids (Apr, 10.1038/s41596-025-01150-y, 2025)

Eva Blondeel (UGent) , Sam Ernst (UGent) , Felix De Vuyst (UGent) , Ákos Diósdi, Cláudio Pinheiro (UGent) , Diogo Miguel Monteiro Estêvão (UGent) , Pekka Rappu, Robin Boiy (UGent) , Sandor Dedeyne (UGent) , Ligia Craciun, et al.

(2025) NATURE PROTOCOLS.

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Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids

Eva Blondeel (UGent) , Sam Ernst (UGent) , Felix De Vuyst (UGent) , Ákos Diósdi, Cláudio Pinheiro (UGent) , Diogo Estêvão, Pekka Rappu, Robin Boiy (UGent) , Sandor Dedeyne (UGent) , Ligia Craciun, et al.

(2025) NATURE PROTOCOLS.

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Journal Article
A1
open access

Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling

The exRNAQC Consortium, Jasper Anckaert (UGent) , Francisco Avila Cobos (UGent) , Anneleen Decock (UGent) , Philippe Decruyenaere (UGent) , Jill Deleu (UGent) , Katleen De Preter (UGent) , Olivier De Wever (UGent) , Jilke De Wilde (UGent) , Bert Dhondt, et al.

(2025) NATURE COMMUNICATIONS. 16(1).

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Journal Article
A2
open access

Polytect : an automatic clustering and labeling method for multicolor digital PCR data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Wim Trypsteen (UGent) , Jo Vandesompele (UGent) , Gertjan Wils (UGent) , David Gleerup (UGent) , Antoon Lievens (UGent) , Olivier Thas (UGent) and Matthijs Vynck (UGent)

(2025) NAR GENOMICS AND BIOINFORMATICS. 7(1).

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Book Chapter

Digital PCR-based gene expression analysis using a highly multiplexed assay with universal detection probes to study induced pluripotent stem cell differentiation into cranial neural crest cells

Gertjan Wils (UGent) , Lisa Hamerlinck (UGent) , Wim Trypsteen (UGent) , Charlotte Van Den Eeckhaut, Jonathan Weiss, Afif Abdel Nour, Sarah Vergult (UGent) and Jo Vandesompele (UGent)

(2025) Gene expression analysis : methods and protocols. In Methods in molecular biology (MIMB) 2880. p.17-47

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Journal Article
A1
open access

Flexible methods for uncertainty estimation of digital PCR data

Yao Chen (UGent) , Ward De Spiegelaere (UGent) , Matthijs Vynck (UGent) , Wim Trypsteen (UGent) , David Gleerup (UGent) , Jo Vandesompele (UGent) and Olivier Thas (UGent)

(2025) ISCIENCE. 28(3).

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Journal Article
A1
open access

Cellular deconstruction of the human skeletal muscle microenvironment identifies an exercise-induced histaminergic crosstalk

Thibaux Van der Stede (UGent) , Alexia Van de Loock (UGent) , Guillermo Turiel, Camilla Hansen, Andrea Tamariz-Ellemann, Max Ullrich (UGent) , Eline Lievens (UGent) , Jan Spaas, Nurten Yigit (UGent) , Jasper Anckaert (UGent) , et al.

(2025) CELL METABOLISM. 37(4). p.842-856.e7

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Journal Article
A1
open access

Human skeletal muscle fiber heterogeneity beyond myosin heavy chains

Roger Moreno-Justicia, Thibaux Van der Stede (UGent) , Ben Stocks, Jenni Laitila, Robert A. Seaborne, Alexia Van de Loock (UGent) , Eline Lievens (UGent) , Diana Samodova, Leyre Marín-Arraiza, Oksana Dmytriyeva, et al.

(2025) NATURE COMMUNICATIONS. 16(1).

Academic Bibliography

Development of a digital PCR TERT/TERRA quantification assay in neuroblastoma

Deconvoluting fiber type proportions from human skeletal muscle transcriptomics and proteomics data using FibeRtypeR

Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids (Apr, 10.1038/s41596-025-01150-y, 2025)

Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids

Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling

Polytect : an automatic clustering and labeling method for multicolor digital PCR data

Digital PCR-based gene expression analysis using a highly multiplexed assay with universal detection probes to study induced pluripotent stem cell differentiation into cranial neural crest cells

Flexible methods for uncertainty estimation of digital PCR data

Cellular deconstruction of the human skeletal muscle microenvironment identifies an exercise-induced histaminergic crosstalk

Human skeletal muscle fiber heterogeneity beyond myosin heavy chains

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