Ghent University Academic Bibliography

Your filters: cql: author exact 21800212-F0EE-11E1-A9DE-61C894A0A6B4 OR author exact 1C3D4B7A-F0EE-11E1-A9DE-61C894A...

Add to list
- Journal Article
- A1
- open access
PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande Moortele (UGent) , Pieter Verschaffelt (UGent) , Qingyao Huang, Nadezhda T. Doncheva, Tanja Holstein (UGent) , Caroline Jachmann (UGent) , Peter Dawyndt (UGent) , Lennart Martens (UGent) , Bart Mesuere (UGent) and Tim Van Den Bossche (UGent)

(2025) MOLECULAR & CELLULAR PROTEOMICS. 24(3).
Add to list
- Journal Article
- A1
- open access
PTMVision : an interactive visualization webserver for post-translational modifications of proteins

Simon Hackl, Caroline Jachmann (UGent) , Mathias Witte Paz, Theresa Anisja Harbig, Lennart Martens (UGent) and Kay Nieselt

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.919-928
Add to list
- Journal Article
- A1
- open access
The microbiologist's guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley‐Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J. Griffin, et al.

(2025) IMETA. 4(3).
Add to list
- Journal Article
- A1
- open access
TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Arthur Declercq (UGent) , Robbe Devreese (UGent) , Jonas Scheid, Caroline Jachmann (UGent) , Tim Van Den Bossche (UGent) , Annica Preikschat, David Gomez-Zepeda, Jeewan Babu Rijal, Aurelie Hirschler, Jonathan R. Krieger, et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(3). p.1067-1076
Add to list
- Journal Article
- A1
- open access
Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

Patrick Willems (UGent) , Fabien Henri Thery (UGent) , Laura Van Moortel (UGent) , Margaux De Meyer (UGent) , An Staes (UGent) , Adillah Gul (UGent) , Lyudmila Kovalchuke (UGent) , Arthur Declercq (UGent) , Robbe Devreese (UGent) , Robbin Bouwmeester (UGent) , et al.

(2025) JOURNAL OF PROTEOME RESEARCH. 24(4). p.2141-2151
Add to list
- Miscellaneous
- open access
omicsGMF : a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk- and single cell proteomics data

Alexandre Segers (UGent) , Cristian Castiglione, Christophe Vanderaa (UGent) , Elfride De Baere (UGent) , Lennart Martens (UGent) , Davide Risso and Lieven Clement (UGent)

(2025) bioRxiv.
Add to list
- Miscellaneous
- open access
The microbiologist’s guide to metaproteomics

Tim Van Den Bossche (UGent) , Jean Armengaud, Dirk Benndorf, Jose Alfredo Blakeley-Ruiz, Madita Brauer, Kai Cheng, Marybeth Creskey, Daniel Figeys, Lucia Grenga, Timothy J Griffin, et al.

(2025) ChemRxiv.
Add to list
- Journal Article
- A1
- open access
Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande Moortele (UGent) , Bram Devlaminck, Simon Van de Vyver (UGent) , Tim Van Den Bossche (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) , Bart Mesuere (UGent) and Pieter Verschaffelt (UGent)

(2025) JOURNAL OF PROTEOME RESEARCH. 24(2). p.949-954
Add to list
- Journal Article
- A1
- open access
Collisional cross-section prediction for multiconformational peptide ions with IM2Deep

Robbe Devreese (UGent) , Alireza Nameni (UGent) , Arthur Declercq (UGent) , Emmy Terryn, Ralf Gabriels (UGent) , Francis Impens (UGent) , Kris Gevaert (UGent) , Lennart Martens (UGent) and Robbin Bouwmeester (UGent)

(2025) ANALYTICAL CHEMISTRY. 97(28). p.15113-15121
Add to list
- Journal Article
- A1
- open access
MHCquant2 refines immunopeptidomics tumor antigen discovery

Jonas Scheid, Steffen Lemke, Naomi Hoenisch-Gravel, Anna Dengler, Timo Sachsenberg, Arthur Declercq (UGent) , Ralf Gabriels (UGent) , Jens Bauer, Marcel Wacker, Leon Bichmann, et al.

(2025) GENOME BIOLOGY. 26(1).

Academic Bibliography

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

PTMVision : an interactive visualization webserver for post-translational modifications of proteins

The microbiologist's guide to metaproteomics

TIMS2Rescore : a data dependent acquisition-parallel accumulation and serial fragmentation-optimized data-driven rescoring pipeline based on MS2Rescore

Maximizing immunopeptidomics-based bacterial epitope discovery by multiple search engines and rescoring

omicsGMF : a multi-tool for dimensionality reduction, batch correction and imputation applied to bulk- and single cell proteomics data

The microbiologist’s guide to metaproteomics

Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Collisional cross-section prediction for multiconformational peptide ions with IM2Deep

MHCquant2 refines immunopeptidomics tumor antigen discovery

Contents

Support

Contact