Ghent University Academic Bibliography

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- Journal Article
- A1
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Unipept visualizations : an interactive visualization library for biological data

Pieter Verschaffelt (UGent) , James Collier (UGent) , Alexander Botzki (UGent) , Lennart Martens (UGent) , Peter Dawyndt (UGent) and Bart Mesuere (UGent)

(2022) BIOINFORMATICS. 38(2). p.562-563
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Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Kay Schallert, Pieter Verschaffelt (UGent) , Bart Mesuere (UGent) , Dirk Benndorf, Lennart Martens (UGent) and Tim Van Den Bossche (UGent)

(2022) JOURNAL OF PROTEOME RESEARCH. 21(4). p.1175-1180
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- Journal Article
- A1
- open access
Orthogonal proteomics methods to unravel the HOTAIR interactome

Louis Delhaye (UGent) , Edith De Bruycker (UGent) , Pieter-Jan Volders (UGent) , Daria Fijalkowska (UGent) , Delphine De Sutter (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Sven Eyckerman (UGent)

(2022) SCIENTIFIC REPORTS. 12(1).
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- Miscellaneous
- open access
Cov2MS: an automated matrix-independent assay for mass spectrometric detection and measurement of SARS-CoV-2 nucleocapsid protein in infectious patients

Bart Van Puyvelde (UGent) , Katleen Van Uytfanghe (UGent) , Laurence Van Oudenhove, Ralf Gabriels (UGent) , Tessa Van Royen (UGent) , Arne Matthys (UGent) , Morteza Razavi, Richard Yip, Terry Pearson, Marijn van Hulle, et al.

(2022) MedRXiv.
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- Miscellaneous
- open access
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van Puyvelde (UGent) , Simon Daled (UGent) , Sander Willems, Ralf Gabriels (UGent) , Anne Gonzalez de Peredo, Karima Chaoui, Emmanuelle Mouton-Barbosa, David Bouyssié, Kurt Boonen, Christopher J. Hughes, et al.

(2022) BioRXiv.
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- Miscellaneous
- open access
Ionbot : a novel, innovative and sensitive machine learning approach to LC-MS/MS peptide identification

Sven Degroeve (UGent) , Ralf Gabriels (UGent) , Kevin Velghe (UGent) , Robbin Bouwmeester (UGent) , Natalia Tichshenko (UGent) and Lennart Martens (UGent)

(2022) BIORXIV.
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- Miscellaneous
- open access
FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data

Mikaela Koutrouli, Pau Piera Líndez, Robbin Bouwmeester (UGent) , Lennart Martens (UGent) and Lars Juhl Jensen

(2022)
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- Miscellaneous
Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

Tine Claeys (UGent) , Maxime Menu, Robbin Bouwmeester (UGent) , Kris Gevaert (UGent) and Lennart Martens (UGent)

(2022)
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- Conference Paper
- C3
Orthogonal proteomics methods to unravel the HOTAIR interactome

Louis Delhaye (UGent) , Edith De Bruycker (UGent) , Pieter-Jan Volders (UGent) , Daria Fijalkowska (UGent) , Delphine De Sutter (UGent) , Sven Degroeve (UGent) , Lennart Martens (UGent) , Pieter Mestdagh (UGent) and Sven Eyckerman (UGent)

(2022) Next-Generation Protein Analysis and Detection (4th edition), Abstracts.
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- Miscellaneous
- open access
psm_utils: A high level Python API for parsing and handling peptide-spectrum-matches and proteomics search results

Ralf Gabriels (UGent) , Arthur Declercq (UGent) , Robbin Bouwmeester (UGent) , Sven Degroeve (UGent) and Lennart Martens (UGent)

(2022)

Academic Bibliography

Unipept visualizations : an interactive visualization library for biological data

Pout2Prot : an efficient tool to create protein (sub)groups from Percolator Output Files

Orthogonal proteomics methods to unravel the HOTAIR interactome

Cov2MS: an automated matrix-independent assay for mass spectrometric detection and measurement of SARS-CoV-2 nucleocapsid protein in infectious patients

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Ionbot : a novel, innovative and sensitive machine learning approach to LC-MS/MS peptide identification

FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data

Machine learning on large-scale proteomics data identifies tissue- and cell type-specific proteins

Orthogonal proteomics methods to unravel the HOTAIR interactome

psm_utils: A high level Python API for parsing and handling peptide-spectrum-matches and proteomics search results

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