Ghent University Academic Bibliography

Journal Article
A2
open access

Protocol for large scale whole blood immune monitoring by mass cytometry and Cyto Quality Pipeline

P Rybakowska, Sofie Van Gassen (UGent) , J Martorell Marugán, Katrien Quintelier (UGent) , Yvan Saeys (UGent) , ME Alarcón-Riquelme and C Marañón

(2022) STAR PROTOCOLS. 3(4).

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Journal Article
A1
open access

Challenges in translational machine learning

Artuur Couckuyt (UGent) , Ruth Seurinck (UGent) , Annelies Emmaneel (UGent) , Katrien Quintelier (UGent) , David Novák (UGent) , Sofie Van Gassen (UGent) and Yvan Saeys (UGent)

(2022) HUMAN GENETICS. 141. p.1451-1466

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Journal Article
A1
open access

PeacoQC : peak-based selection of high quality cytometry data

Annelies Emmaneel (UGent) , Katrien Quintelier (UGent) , Dorine Sichien (UGent) , Paulina Rybakowska, Concepcion Maranon, Marta E. Alarcon-Riquelme, Gert Van Isterdael (UGent) , Sofie Van Gassen (UGent) and Yvan Saeys (UGent)

(2022) CYTOMETRY PART A. 101(4). p.325-338

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Journal Article
A1
open access

Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures

Laetitia Dubouchet, Helena Todorov, Ruth Seurinck (UGent) , Nicolas Vallet, Sofie Van Gassen (UGent) , Aurelien Corneau, Catherine Blanc, Habib Zouali, Anne Boland, Jean-Francois Deleuze, et al.

(2022) SCIENCE TRANSLATIONAL MEDICINE. 14(633).

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Journal Article
A1
open access

The Euroflow PID Orientation Tube in the diagnostic workup of primary immunodeficiency : daily practice performance in a tertiary university hospital

Jana Neirinck (UGent) , Annelies Emmaneel (UGent) , Malicorne Buysse (UGent) , Jan Philippé (UGent) , Sofie Van Gassen (UGent) , Yvan Saeys (UGent) , Xavier Bossuyt, Stefanie De Buyser (UGent) , Mirjam van der Burg, Martin Perez-Andres, et al.

(2022) FRONTIERS IN IMMUNOLOGY. 13.

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Journal Article
A1
open access

Presence of innate lymphoid cells in allogeneic hematopoietic grafts correlates with reduced graft-versus-host disease

Anna Kroeze, Vera van Hoeven, Myrddin W. Verheij, Annelies W. Turksma, Naomi Weterings, Sofie Van Gassen (UGent) , Sacha S. Zeerleder, Bianca Blom, Carlijn Voermans and Mette D. Hazenberg

(2022) CYTOTHERAPY. 24(3). p.302-310

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Journal Article
A1
open access

Immune monitoring in melanoma and urothelial cancer patients treated with anti-PD-1 immunotherapy and SBRT discloses tumor specific immune signatures

Annabel Meireson (UGent) , Simon Tavernier (UGent) , Sofie Van Gassen (UGent) , Nora Sundahl, Annelies Demeyer (UGent) , Mathieu Spaas (UGent) , Vibeke Kruse (UGent) , Liesbeth Ferdinande (UGent) , Jo Van Dorpe (UGent) , Benjamin Hennart, et al.

(2021) CANCERS. 13(11).

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Journal Article
A1
open access

Computational flow cytometry as a diagnostic tool in suspected-myelodysplastic syndromes

Carolien Duetz, Sofie Van Gassen (UGent) , Theresia M. Westers, Margot F. van Spronsen, Costa Bachas, Yvan Saeys (UGent) and Arjan A. van de Loosdrecht

(2021) CYTOMETRY PART A. 99(8). p.814-824

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An updated guide for the perplexed : cytometry in the high-dimensional era

Thomas Liechti, Lukas M. Weber, Thomas M. Ashhurst, Natalie Stanley, Martin Prlic, Sofie Van Gassen (UGent) and Florian Mair

(2021) NATURE IMMUNOLOGY. 22(10). p.1190-1197

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High dimensional profiling identifies specific immune types along the recovery trajectories of critically ill COVID19 patients

P. A. Penttila, Sofie Van Gassen (UGent) , D. Panovska, L. Vanderbeke, Y. Van Herck, Katrien Quintelier (UGent) , Annelies Emmaneel (UGent) , J. Filtjens, B. Malengier-Devlies, K. Ahmadzadeh, et al.

(2021) CELLULAR AND MOLECULAR LIFE SCIENCES. 78(8). p.3987-4002

Academic Bibliography

Protocol for large scale whole blood immune monitoring by mass cytometry and Cyto Quality Pipeline

Challenges in translational machine learning

PeacoQC : peak-based selection of high quality cytometry data

Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures

The Euroflow PID Orientation Tube in the diagnostic workup of primary immunodeficiency : daily practice performance in a tertiary university hospital

Presence of innate lymphoid cells in allogeneic hematopoietic grafts correlates with reduced graft-versus-host disease

Immune monitoring in melanoma and urothelial cancer patients treated with anti-PD-1 immunotherapy and SBRT discloses tumor specific immune signatures

Computational flow cytometry as a diagnostic tool in suspected-myelodysplastic syndromes

An updated guide for the perplexed : cytometry in the high-dimensional era

High dimensional profiling identifies specific immune types along the recovery trajectories of critically ill COVID19 patients

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