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VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets

Boris Parizot UGent, Bert De Rybel UGent and Tom Beeckman UGent (2010) PLANT PHYSIOLOGY. 153(1). p.34-40
abstract
Lateral root initiation and development has been increasingly studied over the last two decades. This postembryonic organogenic process guarantees the spatial development and plasticity of the root system in response to environmental cues and is crucial for the plant's growth and development. Several independent large-scale transcriptome studies in different species resulted in a wealth of data that can be instructive to understand this process at the molecular level. Here, we present an easy and flexible spreadsheet tool, called Visual Lateral Root Transcriptome Compendium, that combines publicly available data sets involved in Arabidopsis (Arabidopsis thaliana) lateral root development and links them with additional information on tissue-specific expression and cell cycle involvement, thus allowing the extraction of novel information from existing data sets in a visual and user-friendly manner. We believe that this tool will be valuable not only for root biologists but also for a broader range of scientists as it enables a fast indication of the potential involvement of a given gene during de novo organogenesis. Document Type: Article
Please use this url to cite or link to this publication:
author
organization
year
type
journalArticle (original)
publication status
published
subject
keyword
CELLS, MAP, GENE-EXPRESSION, ARABIDOPSIS-THALIANA, PERICYCLE, ARF19, NPH4/ARF7, EMERGENCE
journal title
PLANT PHYSIOLOGY
Plant Physiol.
volume
153
issue
1
pages
7 pages
Web of Science type
Article
Web of Science id
000277239900003
JCR category
PLANT SCIENCES
JCR impact factor
6.451 (2010)
JCR rank
8/185 (2010)
JCR quartile
1 (2010)
ISSN
0032-0889
DOI
10.1104/pp.109.148676
language
English
UGent publication?
yes
classification
A1
copyright statement
I have transferred the copyright for this publication to the publisher
id
947443
handle
http://hdl.handle.net/1854/LU-947443
date created
2010-05-17 18:25:25
date last changed
2012-09-19 14:03:56
@article{947443,
  abstract     = {Lateral root initiation and development has been increasingly studied over the last two decades. This postembryonic organogenic process guarantees the spatial development and plasticity of the root system in response to environmental cues and is crucial for the plant's growth and development. Several independent large-scale transcriptome studies in different species resulted in a wealth of data that can be instructive to understand this process at the molecular level. Here, we present an easy and flexible spreadsheet tool, called Visual Lateral Root Transcriptome Compendium, that combines publicly available data sets involved in Arabidopsis (Arabidopsis thaliana) lateral root development and links them with additional information on tissue-specific expression and cell cycle involvement, thus allowing the extraction of novel information from existing data sets in a visual and user-friendly manner. We believe that this tool will be valuable not only for root biologists but also for a broader range of scientists as it enables a fast indication of the potential involvement of a given gene during de novo organogenesis.
Document Type: Article},
  author       = {Parizot, Boris and De Rybel, Bert and Beeckman, Tom},
  issn         = {0032-0889},
  journal      = {PLANT PHYSIOLOGY},
  keyword      = {CELLS,MAP,GENE-EXPRESSION,ARABIDOPSIS-THALIANA,PERICYCLE,ARF19,NPH4/ARF7,EMERGENCE},
  language     = {eng},
  number       = {1},
  pages        = {34--40},
  title        = {VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets},
  url          = {http://dx.doi.org/10.1104/pp.109.148676},
  volume       = {153},
  year         = {2010},
}

Chicago
Parizot, Boris, Bert De Rybel, and Tom Beeckman. 2010. “VisuaLRTC: a New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets.” Plant Physiology 153 (1): 34–40.
APA
Parizot, B., De Rybel, B., & Beeckman, T. (2010). VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets. PLANT PHYSIOLOGY, 153(1), 34–40.
Vancouver
1.
Parizot B, De Rybel B, Beeckman T. VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets. PLANT PHYSIOLOGY. 2010;153(1):34–40.
MLA
Parizot, Boris, Bert De Rybel, and Tom Beeckman. “VisuaLRTC: a New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets.” PLANT PHYSIOLOGY 153.1 (2010): 34–40. Print.