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Rover: a tool to visualize and validate quantitative proteomics data from different sources

Niklaas Colaert (UGent) , Kenny Helsens (UGent) , Francis Impens (UGent) , Joël Vandekerckhove (UGent) and Kris Gevaert (UGent)
(2010) PROTEOMICS. 10(6). p.1226-1229
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Abstract
Manual validation of regulated proteins found in MS-driven quantitative proteome studies is tedious. Here we present Rover (http://genesis.ugent.be/rover), a tool that facilitates this process. Rover accepts quantitative data from different sources such as MASCOT Distiller and MaxQuant and, in an intuitive environment, Rover visualizes these data such that the user can select and validate algorithm-suggested regulated proteins in the frame of the whole experiment and in the context of the protein inference problem.
Keywords
Manual validation, MASCOT Distiller, MaxQuant, PROTEIN, Quantitative proteomics, Bioinformatics, Protein inference, IDENTIFICATION

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Please use this url to cite or link to this publication:

Chicago
Colaert, Niklaas, Kenny Helsens, Francis Impens, Joël Vandekerckhove, and Kris Gevaert. 2010. “Rover: a Tool to Visualize and Validate Quantitative Proteomics Data from Different Sources.” Proteomics 10 (6): 1226–1229.
APA
Colaert, N., Helsens, K., Impens, F., Vandekerckhove, J., & Gevaert, K. (2010). Rover: a tool to visualize and validate quantitative proteomics data from different sources. PROTEOMICS, 10(6), 1226–1229.
Vancouver
1.
Colaert N, Helsens K, Impens F, Vandekerckhove J, Gevaert K. Rover: a tool to visualize and validate quantitative proteomics data from different sources. PROTEOMICS. 2010;10(6):1226–9.
MLA
Colaert, Niklaas, Kenny Helsens, Francis Impens, et al. “Rover: a Tool to Visualize and Validate Quantitative Proteomics Data from Different Sources.” PROTEOMICS 10.6 (2010): 1226–1229. Print.
@article{936033,
  abstract     = {Manual validation of regulated proteins found in MS-driven quantitative proteome studies is tedious. Here we present Rover (http://genesis.ugent.be/rover), a tool that facilitates this process. Rover accepts quantitative data from different sources such as MASCOT Distiller and MaxQuant and, in an intuitive environment, Rover visualizes these data such that the user can select and validate algorithm-suggested regulated proteins in the frame of the whole experiment and in the context of the protein inference problem.},
  author       = {Colaert, Niklaas and Helsens, Kenny and Impens, Francis and Vandekerckhove, Jo{\"e}l and Gevaert, Kris},
  issn         = {1615-9853},
  journal      = {PROTEOMICS},
  keyword      = {Manual validation,MASCOT Distiller,MaxQuant,PROTEIN,Quantitative proteomics,Bioinformatics,Protein inference,IDENTIFICATION},
  language     = {eng},
  number       = {6},
  pages        = {1226--1229},
  title        = {Rover: a tool to visualize and validate quantitative proteomics data from different sources},
  url          = {http://dx.doi.org/10.1002/pmic.200900379},
  volume       = {10},
  year         = {2010},
}

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