
A new classification of Cyperaceae (Poales) supported by phylogenomic data
- Author
- Isabel Larridon (UGent) , Alexandre Zuntini, Etienne Léveillé-Bourret, Russell Barrett, Julian Starr, Muthama Muasya, Tamara Villaverde, Kenneth Bauters, Grace Brewer, Jeremy Bruhl, Suzana Costa, Tammy Elliott, Niroshini Epitawalage, Antonio Marcial Escudero Lirio, Isabel Fairlie, Paul Goetghebeur (UGent) , Andrew Hipp, Pedro Jiménez-Mejías, Izai A. B. Sabino Kikuchi, Maurin Olivier, Lisa Pokorny, Eric Roalson, Ilias Semmouri (UGent) , David Simpson, Daniel Spalink, Wayt Thomas, Karen Wilson, Martin Xanthos, Felix Forest and William Baker
- Organization
- Abstract
- Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology because of their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C4 photosynthesis and holocentric chromosomes. Goetghebeur’s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower and embryo characters plus anatomical and other information. Since then, several family-level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family-wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. Additionally, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes and 10 subtribes and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae and Oreobolinae.
- Keywords
- Angiosperms353, Classification, Cyperaceae, phylogenomics, Poales, systematics, targeted sequencing, Taxonomy
Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8767703
- MLA
- Larridon, Isabel, et al. “A New Classification of Cyperaceae (Poales) Supported by Phylogenomic Data.” Botany 2022 Conference, Abstracts, 2022.
- APA
- Larridon, I., Zuntini, A., Léveillé-Bourret, E., Barrett, R., Starr, J., Muasya, M., … Baker, W. (2022). A new classification of Cyperaceae (Poales) supported by phylogenomic data. Botany 2022 Conference, Abstracts. Presented at the Botany 2022 Conference : Plants at the Extreme!, Anchorage, Alaska.
- Chicago author-date
- Larridon, Isabel, Alexandre Zuntini, Etienne Léveillé-Bourret, Russell Barrett, Julian Starr, Muthama Muasya, Tamara Villaverde, et al. 2022. “A New Classification of Cyperaceae (Poales) Supported by Phylogenomic Data.” In Botany 2022 Conference, Abstracts.
- Chicago author-date (all authors)
- Larridon, Isabel, Alexandre Zuntini, Etienne Léveillé-Bourret, Russell Barrett, Julian Starr, Muthama Muasya, Tamara Villaverde, Kenneth Bauters, Grace Brewer, Jeremy Bruhl, Suzana Costa, Tammy Elliott, Niroshini Epitawalage, Antonio Marcial Escudero Lirio, Isabel Fairlie, Paul Goetghebeur, Andrew Hipp, Pedro Jiménez-Mejías, Izai A. B. Sabino Kikuchi, Maurin Olivier, Lisa Pokorny, Eric Roalson, Ilias Semmouri, David Simpson, Daniel Spalink, Wayt Thomas, Karen Wilson, Martin Xanthos, Felix Forest, and William Baker. 2022. “A New Classification of Cyperaceae (Poales) Supported by Phylogenomic Data.” In Botany 2022 Conference, Abstracts.
- Vancouver
- 1.Larridon I, Zuntini A, Léveillé-Bourret E, Barrett R, Starr J, Muasya M, et al. A new classification of Cyperaceae (Poales) supported by phylogenomic data. In: Botany 2022 Conference, Abstracts. 2022.
- IEEE
- [1]I. Larridon et al., “A new classification of Cyperaceae (Poales) supported by phylogenomic data,” in Botany 2022 Conference, Abstracts, Anchorage, Alaska, 2022.
@inproceedings{8767703, abstract = {{Cyperaceae (sedges) are the third largest monocot family and are of considerable economic and ecological importance. Sedges represent an ideal model family to study evolutionary biology because of their species richness, global distribution, large discrepancies in lineage diversity, broad range of ecological preferences, and adaptations including multiple origins of C4 photosynthesis and holocentric chromosomes. Goetghebeur’s seminal work on Cyperaceae published in 1998 provided the most recent complete classification at tribal and generic level, based on a morphological study of Cyperaceae inflorescence, spikelet, flower and embryo characters plus anatomical and other information. Since then, several family-level molecular phylogenetic studies using Sanger sequence data have been published. Here, more than 20 years after the last comprehensive classification of the family, we present the first family-wide phylogenomic study of Cyperaceae based on targeted sequencing using the Angiosperms353 probe kit sampling 311 accessions. Additionally, 62 accessions available from GenBank were mined for overlapping reads and included in the phylogenomic analyses. Informed by this backbone phylogeny, a new classification for the family at the tribal, subtribal and generic levels is proposed. The majority of previously recognized suprageneric groups are supported, and for the first time we establish support for tribe Cryptangieae as a clade including the genus Koyamaea. We provide a taxonomic treatment including identification keys and diagnoses for the 2 subfamilies, 24 tribes and 10 subtribes and basic information on the 95 genera. The classification includes five new subtribes in tribe Schoeneae: Anthelepidinae, Caustiinae, Gymnoschoeninae, Lepidospermatinae and Oreobolinae.}}, author = {{Larridon, Isabel and Zuntini, Alexandre and Léveillé-Bourret, Etienne and Barrett, Russell and Starr, Julian and Muasya, Muthama and Villaverde, Tamara and Bauters, Kenneth and Brewer, Grace and Bruhl, Jeremy and Costa, Suzana and Elliott, Tammy and Epitawalage, Niroshini and Escudero Lirio, Antonio Marcial and Fairlie, Isabel and Goetghebeur, Paul and Hipp, Andrew and Jiménez-Mejías, Pedro and Sabino Kikuchi, Izai A. B. and Olivier, Maurin and Pokorny, Lisa and Roalson, Eric and Semmouri, Ilias and Simpson, David and Spalink, Daniel and Thomas, Wayt and Wilson, Karen and Xanthos, Martin and Forest, Felix and Baker, William}}, booktitle = {{Botany 2022 Conference, Abstracts}}, keywords = {{Angiosperms353,Classification,Cyperaceae,phylogenomics,Poales,systematics,targeted sequencing,Taxonomy}}, language = {{eng}}, location = {{Anchorage, Alaska}}, title = {{A new classification of Cyperaceae (Poales) supported by phylogenomic data}}, year = {{2022}}, }