Global transpiration data from sap flow measurements : the SAPFLUXNET database
- Author
- Rafael Poyatos lopez (UGent) , Victor Granda, Victor Flo, Mark A. Adams, Balazs Adorjan, David Aguade, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, V Bolstad, Paul, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jerome Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugenie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, I Forrester, David, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, Andre Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Holtta, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Victor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Alvaro Lopez-Bernal, Michael M. Loranty, Dietmar Luttschwager, Cate Macinnis-Ng, Isabelle Marechaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Meszaros, Mirco Migliavacca, Patrick Mitchell, Meelis Molder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard Peters (UGent) , Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Roll, Bruno H. P. Rosado, Lucy Rowland, V Rubtsov, Alexey, Santiago Sabate, Yann Salmon, Roberto Luis Salomon Moreno (UGent) , Elisenda Sanchez-Costa, Karina V. R. Schafer, Bernhard Schuldt, Alexandr Shashkin, Clement Stahl, Marko Stojanovic, Juan Carlos Suarez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesar, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe (UGent) , Maurizio Mencuccini and Jordi Martinez-Vilalta
- Organization
- Abstract
- Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land-atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The "sapfluxnetr" R package - designed to access, visualize, and process SAPFLUXNET data - is available from CRAN.
- Keywords
- HEAT-PULSE METHOD, VAPOR-PRESSURE DEFICIT, WATER-USE STRATEGIES, EDDY, COVARIANCE, FLUX-DENSITY, STOMATAL CONDUCTANCE, THERMAL DISSIPATION, PLANT TRANSPIRATION, SAPFLOW MEASUREMENTS, RADIAL PATTERNS
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8759628
- MLA
- Poyatos lopez, Rafael, et al. “Global Transpiration Data from Sap Flow Measurements : The SAPFLUXNET Database.” EARTH SYSTEM SCIENCE DATA, vol. 13, no. 6, 2021, pp. 2607–49, doi:10.5194/essd-13-2607-2021.
- APA
- Poyatos lopez, R., Granda, V., Flo, V., Adams, M. A., Adorjan, B., Aguade, D., … Martinez-Vilalta, J. (2021). Global transpiration data from sap flow measurements : the SAPFLUXNET database. EARTH SYSTEM SCIENCE DATA, 13(6), 2607–2649. https://doi.org/10.5194/essd-13-2607-2021
- Chicago author-date
- Poyatos lopez, Rafael, Victor Granda, Victor Flo, Mark A. Adams, Balazs Adorjan, David Aguade, Marcos P. M. Aidar, et al. 2021. “Global Transpiration Data from Sap Flow Measurements : The SAPFLUXNET Database.” EARTH SYSTEM SCIENCE DATA 13 (6): 2607–49. https://doi.org/10.5194/essd-13-2607-2021.
- Chicago author-date (all authors)
- Poyatos lopez, Rafael, Victor Granda, Victor Flo, Mark A. Adams, Balazs Adorjan, David Aguade, Marcos P. M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, V Bolstad, Paul, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jerome Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Hongzhong Dang, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugenie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, I Forrester, David, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, Andre Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul J. Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Holtta, Friso Holwerda, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Victor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Anders Lindroth, Pilar Llorens, Alvaro Lopez-Bernal, Michael M. Loranty, Dietmar Luttschwager, Cate Macinnis-Ng, Isabelle Marechaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Meszaros, Mirco Migliavacca, Patrick Mitchell, Meelis Molder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, A. Christopher Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Roll, Bruno H. P. Rosado, Lucy Rowland, V Rubtsov, Alexey, Santiago Sabate, Yann Salmon, Roberto Luis Salomon Moreno, Elisenda Sanchez-Costa, Karina V. R. Schafer, Bernhard Schuldt, Alexandr Shashkin, Clement Stahl, Marko Stojanovic, Juan Carlos Suarez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesar, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martinez-Vilalta. 2021. “Global Transpiration Data from Sap Flow Measurements : The SAPFLUXNET Database.” EARTH SYSTEM SCIENCE DATA 13 (6): 2607–2649. doi:10.5194/essd-13-2607-2021.
- Vancouver
- 1.Poyatos lopez R, Granda V, Flo V, Adams MA, Adorjan B, Aguade D, et al. Global transpiration data from sap flow measurements : the SAPFLUXNET database. EARTH SYSTEM SCIENCE DATA. 2021;13(6):2607–49.
- IEEE
- [1]R. Poyatos lopez et al., “Global transpiration data from sap flow measurements : the SAPFLUXNET database,” EARTH SYSTEM SCIENCE DATA, vol. 13, no. 6, pp. 2607–2649, 2021.
@article{8759628, abstract = {{Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land-atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The "sapfluxnetr" R package - designed to access, visualize, and process SAPFLUXNET data - is available from CRAN.}}, author = {{Poyatos lopez, Rafael and Granda, Victor and Flo, Victor and Adams, Mark A. and Adorjan, Balazs and Aguade, David and Aidar, Marcos P. M. and Allen, Scott and Susana Alvarado-Barrientos, M. and Anderson-Teixeira, Kristina J. and Aparecido, Luiza Maria and Arain, M. Altaf and Aranda, Ismael and Asbjornsen, Heidi and Baxter, Robert and Beamesderfer, Eric and Berry, Z. Carter and Berveiller, Daniel and Blakely, Bethany and Boggs, Johnny and Bohrer, Gil and Bolstad, Paul, V and Bonal, Damien and Bracho, Rosvel and Brito, Patricia and Brodeur, Jason and Casanoves, Fernando and Chave, Jerome and Chen, Hui and Cisneros, Cesar and Clark, Kenneth and Cremonese, Edoardo and Dang, Hongzhong and David, Jorge S. and David, Teresa S. and Delpierre, Nicolas and Desai, Ankur R. and Do, Frederic C. and Dohnal, Michal and Domec, Jean-Christophe and Dzikiti, Sebinasi and Edgar, Colin and Eichstaedt, Rebekka and El-Madany, Tarek S. and Elbers, Jan and Eller, Cleiton B. and Euskirchen, Eugenie S. and Ewers, Brent and Fonti, Patrick and Forner, Alicia and Forrester, David, I and Freitas, Helber C. and Galvagno, Marta and Garcia-Tejera, Omar and Ghimire, Chandra Prasad and Gimeno, Teresa E. and Grace, John and Granier, Andre and Griebel, Anne and Guangyu, Yan and Gush, Mark B. and Hanson, Paul J. and Hasselquist, Niles J. and Heinrich, Ingo and Hernandez-Santana, Virginia and Herrmann, Valentine and Holtta, Teemu and Holwerda, Friso and Irvine, James and Ayutthaya, Supat Isarangkool Na and Jarvis, Paul G. and Jochheim, Hubert and Joly, Carlos A. and Kaplick, Julia and Kim, Hyun Seok and Klemedtsson, Leif and Kropp, Heather and Lagergren, Fredrik and Lane, Patrick and Lang, Petra and Lapenas, Andrei and Lechuga, Victor and Lee, Minsu and Leuschner, Christoph and Limousin, Jean-Marc and Linares, Juan Carlos and Linderson, Maj-Lena and Lindroth, Anders and Llorens, Pilar and Lopez-Bernal, Alvaro and Loranty, Michael M. and Luttschwager, Dietmar and Macinnis-Ng, Cate and Marechaux, Isabelle and Martin, Timothy A. and Matheny, Ashley and McDowell, Nate and McMahon, Sean and Meir, Patrick and Meszaros, Ilona and Migliavacca, Mirco and Mitchell, Patrick and Molder, Meelis and Montagnani, Leonardo and Moore, Georgianne W. and Nakada, Ryogo and Niu, Furong and Nolan, Rachael H. and Norby, Richard and Novick, Kimberly and Oberhuber, Walter and Obojes, Nikolaus and Oishi, A. Christopher and Oliveira, Rafael S. and Oren, Ram and Ourcival, Jean-Marc and Paljakka, Teemu and Perez-Priego, Oscar and Peri, Pablo L. and Peters, Richard and Pfautsch, Sebastian and Pockman, William T. and Preisler, Yakir and Rascher, Katherine and Robinson, George and Rocha, Humberto and Rocheteau, Alain and Roll, Alexander and Rosado, Bruno H. P. and Rowland, Lucy and Rubtsov, Alexey, V and Sabate, Santiago and Salmon, Yann and Salomon Moreno, Roberto Luis and Sanchez-Costa, Elisenda and Schafer, Karina V. R. and Schuldt, Bernhard and Shashkin, Alexandr and Stahl, Clement and Stojanovic, Marko and Suarez, Juan Carlos and Sun, Ge and Szatniewska, Justyna and Tatarinov, Fyodor and Tesar, Miroslav and Thomas, Frank M. and Tor-ngern, Pantana and Urban, Josef and Valladares, Fernando and van der Tol, Christiaan and van Meerveld, Ilja and Varlagin, Andrej and Voigt, Holm and Warren, Jeffrey and Werner, Christiane and Werner, Willy and Wieser, Gerhard and Wingate, Lisa and Wullschleger, Stan and Yi, Koong and Zweifel, Roman and Steppe, Kathy and Mencuccini, Maurizio and Martinez-Vilalta, Jordi}}, issn = {{1866-3508}}, journal = {{EARTH SYSTEM SCIENCE DATA}}, keywords = {{HEAT-PULSE METHOD,VAPOR-PRESSURE DEFICIT,WATER-USE STRATEGIES,EDDY,COVARIANCE,FLUX-DENSITY,STOMATAL CONDUCTANCE,THERMAL DISSIPATION,PLANT TRANSPIRATION,SAPFLOW MEASUREMENTS,RADIAL PATTERNS}}, language = {{eng}}, number = {{6}}, pages = {{2607--2649}}, title = {{Global transpiration data from sap flow measurements : the SAPFLUXNET database}}, url = {{http://doi.org/10.5194/essd-13-2607-2021}}, volume = {{13}}, year = {{2021}}, }
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