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Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction

Xiaojie Liu (UGent) , Jonas Blomme (UGent) , Kenny Bogaert (UGent) , Sofie D'hondt (UGent) , Thomas Wichard, Dieter Deforce (UGent) , Filip Van Nieuwerburgh (UGent) and Olivier De Clerck (UGent)
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Abstract
Background: The molecular mechanism underlying sexual reproduction in land plants is well understood in model plants and is a target for crop improvement. However, unlike land plants, the genetic basis involved in triggering reproduction and gamete formation remains elusive in most seaweeds, which are increasingly viewed as an alternative source of functional food and feedstock for energy applications. Results: Gametogenesis of Ulva mutabilis, a model organism for green seaweeds, was studied. We analyzed transcriptome dynamics at different time points during gametogenesis following induction of reproduction by fragmentation and removal of sporulation inhibitors. Analyses demonstrated that 45% of the genes in the genome were differentially expressed during gametogenesis. We identified several transcription factors that potentially play a key role in the early gametogenesis of Ulva given the function of their homologs in higher plants and microalgae. In particular, the detailed expression pattern of an evolutionarily conserved transcription factor containing an RWP-RK domain suggested a key role during Ulva gametogenesis. Conclusions: Transcriptomic analyses of gametogenesis in the green seaweed Ulva highlight the importance of a conserved RWP-RK transcription factor in the induction of sexual reproduction. The identification of putative master regulators of gametogenesis provides a starting point for further functional characterization.
Keywords
Gametogenesis, Green seaweeds, RWP-RK transcription factor, Reproduction, Transcriptome, Ulva

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MLA
Liu, Xiaojie, et al. “Transcriptional Dynamics of Gametogenesis in the Green Seaweed Ulva Mutabilis Identifies an RWP-RK Transcription Factor Linked to Reproduction.” BMC PLANT BIOLOGY, vol. 22, no. 1, 2022, doi:10.1186/s12870-021-03361-3.
APA
Liu, X., Blomme, J., Bogaert, K., D’hondt, S., Wichard, T., Deforce, D., … De Clerck, O. (2022). Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction. BMC PLANT BIOLOGY, 22(1). https://doi.org/10.1186/s12870-021-03361-3
Chicago author-date
Liu, Xiaojie, Jonas Blomme, Kenny Bogaert, Sofie D’hondt, Thomas Wichard, Dieter Deforce, Filip Van Nieuwerburgh, and Olivier De Clerck. 2022. “Transcriptional Dynamics of Gametogenesis in the Green Seaweed Ulva Mutabilis Identifies an RWP-RK Transcription Factor Linked to Reproduction.” BMC PLANT BIOLOGY 22 (1). https://doi.org/10.1186/s12870-021-03361-3.
Chicago author-date (all authors)
Liu, Xiaojie, Jonas Blomme, Kenny Bogaert, Sofie D’hondt, Thomas Wichard, Dieter Deforce, Filip Van Nieuwerburgh, and Olivier De Clerck. 2022. “Transcriptional Dynamics of Gametogenesis in the Green Seaweed Ulva Mutabilis Identifies an RWP-RK Transcription Factor Linked to Reproduction.” BMC PLANT BIOLOGY 22 (1). doi:10.1186/s12870-021-03361-3.
Vancouver
1.
Liu X, Blomme J, Bogaert K, D’hondt S, Wichard T, Deforce D, et al. Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction. BMC PLANT BIOLOGY. 2022;22(1).
IEEE
[1]
X. Liu et al., “Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction,” BMC PLANT BIOLOGY, vol. 22, no. 1, 2022.
@article{8733157,
  abstract     = {{Background: The molecular mechanism underlying sexual reproduction in land plants is well understood in model plants and is a target for crop improvement. However, unlike land plants, the genetic basis involved in triggering reproduction and gamete formation remains elusive in most seaweeds, which are increasingly viewed as an alternative source of functional food and feedstock for energy applications.

Results: Gametogenesis of Ulva mutabilis, a model organism for green seaweeds, was studied. We analyzed transcriptome dynamics at different time points during gametogenesis following induction of reproduction by fragmentation and removal of sporulation inhibitors. Analyses demonstrated that 45% of the genes in the genome were differentially expressed during gametogenesis. We identified several transcription factors that potentially play a key role in the early gametogenesis of Ulva given the function of their homologs in higher plants and microalgae. In particular, the detailed expression pattern of an evolutionarily conserved transcription factor containing an RWP-RK domain suggested a key role during Ulva gametogenesis.

Conclusions: Transcriptomic analyses of gametogenesis in the green seaweed Ulva highlight the importance of a conserved RWP-RK transcription factor in the induction of sexual reproduction. The identification of putative master regulators of gametogenesis provides a starting point for further functional characterization.}},
  articleno    = {{19}},
  author       = {{Liu, Xiaojie and Blomme, Jonas and Bogaert, Kenny and D'hondt, Sofie and Wichard, Thomas and Deforce, Dieter and Van Nieuwerburgh, Filip and De Clerck, Olivier}},
  issn         = {{1471-2229}},
  journal      = {{BMC PLANT BIOLOGY}},
  keywords     = {{Gametogenesis,Green seaweeds,RWP-RK transcription factor,Reproduction,Transcriptome,Ulva}},
  language     = {{eng}},
  number       = {{1}},
  pages        = {{12}},
  title        = {{Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction}},
  url          = {{http://doi.org/10.1186/s12870-021-03361-3}},
  volume       = {{22}},
  year         = {{2022}},
}

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