Academic Bibliography

 Search 200 years of publications by Ghent University researchers.
Advanced search
1 file | 3.09 MB
Add to list
  1. Search results
  2. The Euscaphis japonica genome and the...

The Euscaphis japonica genome and the evolution of malvids

Wei‐Hong Sun, Zhen Li (UGent) , Shuang Xiang, Lin Ni, Diyang Zhang, De‐Qiang Chen, Meng‐Yuan Qiu, Qi‐Gong Zhang, Lin Xiao, Le Din, et al.
(2021) PLANT JOURNAL. 108(5). p.1382-1399
Author
Organization
Project
Abstract
Malvids is one of the largest clades of rosids, includes 58 families and exhibits remarkable morphological and ecological diversity. Here, we report a high-quality chromosome-level genome assembly for Euscaphis japonica, an early-diverging species within malvids. Genome-based phylogenetic analysis suggests that the unstable phylogenetic position of E. japonica may result from incomplete lineage sorting and hybridization event during the diversification of the ancestral population of malvids. Euscaphis japonica experienced two polyploidization events: the ancient whole genome triplication event shared with most eudicots (commonly known as the γ event) and a more recent whole genome duplication event, unique to E. japonica. By resequencing 101 samples from 11 populations, we speculate that the temperature has led to the differentiation of the evergreen and deciduous of E. japonica and the completely different population histories of these two groups. In total, 1012 candidate positively selected genes in the evergreen were detected, some of which are involved in flower and fruit development. We found that reddening and dehiscence of the E. japonica pericarp and long fruit-hanging time promoted the reproduction of E. japonica populations, and revealed the expression patterns of genes related to fruit reddening, dehiscence and abscission. The key genes involved in pentacyclic triterpene synthesis in E. japonica were identified, and different expression patterns of these genes may contribute to pentacyclic triterpene diversification. Our work sheds light on the evolution of E. japonica and malvids, particularly on the diversification of E. japonica and the genetic basis for their fruit dehiscence and abscission.
Keywords
Cell Biology, Plant Science, Genetics, Euscaphis japonica, malvids, genome, population history, MADS-BOX GENES, MULTIPLE SEQUENCE ALIGNMENT, OLEANOLIC ACID, PROANTHOCYANIDIN BIOSYNTHESIS, PHYLOGENETIC ANALYSIS, SYNTHASE GENE, ARABIDOPSIS, EXPRESSION, PROTEIN, TOOL

Downloads

  • Download
    Sun et al. 2021 Plant Journal 108 1382.pdf
    • full text (Published version)
    • |
    • open access
    • |
    • PDF
    • |
    • 3.09 MB

Citation

Please use this url to cite or link to this publication:

MLA
Sun, Wei‐Hong, et al. “The Euscaphis Japonica Genome and the Evolution of Malvids.” PLANT JOURNAL, vol. 108, no. 5, 2021, pp. 1382–99, doi:10.1111/tpj.15518.
APA
Sun, W., Li, Z., Xiang, S., Ni, L., Zhang, D., Chen, D., … Zou, S. (2021). The Euscaphis japonica genome and the evolution of malvids. PLANT JOURNAL, 108(5), 1382–1399. https://doi.org/10.1111/tpj.15518
Chicago author-date
Sun, Wei‐Hong, Zhen Li, Shuang Xiang, Lin Ni, Diyang Zhang, De‐Qiang Chen, Meng‐Yuan Qiu, et al. 2021. “The Euscaphis Japonica Genome and the Evolution of Malvids.” PLANT JOURNAL 108 (5): 1382–99. https://doi.org/10.1111/tpj.15518.
Chicago author-date (all authors)
Sun, Wei‐Hong, Zhen Li, Shuang Xiang, Lin Ni, Diyang Zhang, De‐Qiang Chen, Meng‐Yuan Qiu, Qi‐Gong Zhang, Lin Xiao, Le Din, Yifan Li, Xing‐Yu Liao, Xue‐Die Liu, Yu‐Ting Jiang, Pei‐Lan Zhang, Hui Ni, Yifan Wang, Yi‐Xun Yue, Xi Wu, Xiang‐Qing Din, Wei Huang, Zhi‐Wen Wang, Xiaokai Ma, Bobin Liu, Xiao‐Xing Zou, Yves Van de Peer, Zhong‐Jian Liu, and Shuang‐Quan Zou. 2021. “The Euscaphis Japonica Genome and the Evolution of Malvids.” PLANT JOURNAL 108 (5): 1382–1399. doi:10.1111/tpj.15518.
Vancouver
1.
Sun W, Li Z, Xiang S, Ni L, Zhang D, Chen D, et al. The Euscaphis japonica genome and the evolution of malvids. PLANT JOURNAL. 2021;108(5):1382–99.
IEEE
[1]
W. Sun et al., “The Euscaphis japonica genome and the evolution of malvids,” PLANT JOURNAL, vol. 108, no. 5, pp. 1382–1399, 2021.
@article{8730912,
  abstract     = {{Malvids is one of the largest clades of rosids, includes 58 families and exhibits remarkable morphological and ecological diversity. Here, we report a high-quality chromosome-level genome assembly for Euscaphis japonica, an early-diverging species within malvids. Genome-based phylogenetic analysis suggests that the unstable phylogenetic position of E. japonica may result from incomplete lineage sorting and hybridization event during the diversification of the ancestral population of malvids. Euscaphis japonica experienced two polyploidization events: the ancient whole genome triplication event shared with most eudicots (commonly known as the γ event) and a more recent whole genome duplication event, unique to E. japonica. By resequencing 101 samples from 11 populations, we speculate that the temperature has led to the differentiation of the evergreen and deciduous of E. japonica and the completely different population histories of these two groups. In total, 1012 candidate positively selected genes in the evergreen were detected, some of which are involved in flower and fruit development. We found that reddening and dehiscence of the E. japonica pericarp and long fruit-hanging time promoted the reproduction of E. japonica populations, and revealed the expression patterns of genes related to fruit reddening, dehiscence and abscission. The key genes involved in pentacyclic triterpene synthesis in E. japonica were identified, and different expression patterns of these genes may contribute to pentacyclic triterpene diversification. Our work sheds light on the evolution of E. japonica and malvids, particularly on the diversification of E. japonica and the genetic basis for their fruit dehiscence and abscission.}},
  author       = {{Sun, Wei‐Hong and Li, Zhen and Xiang, Shuang and Ni, Lin and Zhang, Diyang and Chen, De‐Qiang and Qiu, Meng‐Yuan and Zhang, Qi‐Gong and Xiao, Lin and Din, Le and Li, Yifan and Liao, Xing‐Yu and Liu, Xue‐Die and Jiang, Yu‐Ting and Zhang, Pei‐Lan and Ni, Hui and Wang, Yifan and Yue, Yi‐Xun and Wu, Xi and Din, Xiang‐Qing and Huang, Wei and Wang, Zhi‐Wen and Ma, Xiaokai and Liu, Bobin and Zou, Xiao‐Xing and Van de Peer, Yves and Liu, Zhong‐Jian and Zou, Shuang‐Quan}},
  issn         = {{0960-7412}},
  journal      = {{PLANT JOURNAL}},
  keywords     = {{Cell Biology,Plant Science,Genetics,Euscaphis japonica,malvids,genome,population history,MADS-BOX GENES,MULTIPLE SEQUENCE ALIGNMENT,OLEANOLIC ACID,PROANTHOCYANIDIN BIOSYNTHESIS,PHYLOGENETIC ANALYSIS,SYNTHASE GENE,ARABIDOPSIS,EXPRESSION,PROTEIN,TOOL}},
  language     = {{eng}},
  number       = {{5}},
  pages        = {{1382--1399}},
  title        = {{The Euscaphis japonica genome and the evolution of malvids}},
  url          = {{http://doi.org/10.1111/tpj.15518}},
  volume       = {{108}},
  year         = {{2021}},
}
Altmetric
View in Altmetric
Web of Science
Times cited: