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Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig

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Abstract
A study on the polyphasic taxonomic classification of an Arcobacter strain, R-73987(T), isolated from the rectal mucus of a porcine intestinal tract, was performed. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the strain could be assigned to the genus Arcobacter and suggested that strain R-73987(T) belongs to a novel undescribed species. Comparative analysis of the rpoB gene sequence confirmed the findings. Arcobacter faecis LMG 28519(T) was identified as its closest neighbour in a multigene analysis based on 107 protein- encoding genes. Further, whole-genome sequence comparisons by means of average nucleotide identity and in silico DNA-DNA hybridization between the genome of strain R-73987(T) and the genomes of validly named Arcobacter species resulted in values below 95-96 and 70%, respectively. In addition, a phenotypic analysis further corroborated the conclusion that strain R-73987(T) represents a novel Arcobacter species, for which the name Arcobacter vandammei sp. nov. is proposed. The type strain is R-73987(T) (=LMG 31429(T)=CCUG 75005(T)). This appears to be the first Arcobacter species recovered from porcine intestinal mucus.
Keywords
General Medicine, Ecology, Evolution, Behavior and Systematics, Microbiology, Arcobacter, Arcobacteraceae, digital DNA-DNA hybridization, mucus, OrthoANlu, pig, MULTIPLEX PCR ASSAY, PATHOGEN ARCOBACTER, MINIMAL STANDARDS, CAMPYLOBACTER, IDENTIFICATION, TAXONOMY, CLASSIFICATION, HELICOBACTER, ALGORITHM, BUTZLERI

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Citation

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MLA
Kerkhof, Pieter-Jan, et al. “Arcobacter Vandammei Sp. Nov., Isolated from the Rectal Mucus of a Healthy Pig.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol. 71, no. 11, 2021, doi:10.1099/ijsem.0.005113.
APA
Kerkhof, P.-J., On, S. L. W., & Houf, K. (2021). Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 71(11). https://doi.org/10.1099/ijsem.0.005113
Chicago author-date
Kerkhof, Pieter-Jan, Stephen L. W. On, and Kurt Houf. 2021. “Arcobacter Vandammei Sp. Nov., Isolated from the Rectal Mucus of a Healthy Pig.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71 (11). https://doi.org/10.1099/ijsem.0.005113.
Chicago author-date (all authors)
Kerkhof, Pieter-Jan, Stephen L. W. On, and Kurt Houf. 2021. “Arcobacter Vandammei Sp. Nov., Isolated from the Rectal Mucus of a Healthy Pig.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71 (11). doi:10.1099/ijsem.0.005113.
Vancouver
1.
Kerkhof P-J, On SLW, Houf K. Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2021;71(11).
IEEE
[1]
P.-J. Kerkhof, S. L. W. On, and K. Houf, “Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig,” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol. 71, no. 11, 2021.
@article{8727280,
  abstract     = {{A study on the polyphasic taxonomic classification of an Arcobacter strain, R-73987(T), isolated from the rectal mucus of a porcine intestinal tract, was performed. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that the strain could be assigned to the genus Arcobacter and suggested that strain R-73987(T) belongs to a novel undescribed species. Comparative analysis of the rpoB gene sequence confirmed the findings. Arcobacter faecis LMG 28519(T) was identified as its closest neighbour in a multigene analysis based on 107 protein- encoding genes. Further, whole-genome sequence comparisons by means of average nucleotide identity and in silico DNA-DNA hybridization between the genome of strain R-73987(T) and the genomes of validly named Arcobacter species resulted in values below 95-96 and 70%, respectively. In addition, a phenotypic analysis further corroborated the conclusion that strain R-73987(T) represents a novel Arcobacter species, for which the name Arcobacter vandammei sp. nov. is proposed. The type strain is R-73987(T) (=LMG 31429(T)=CCUG 75005(T)). This appears to be the first Arcobacter species recovered from porcine intestinal mucus.}},
  articleno    = {{005113}},
  author       = {{Kerkhof, Pieter-Jan and On, Stephen L. W. and Houf, Kurt}},
  issn         = {{1466-5026}},
  journal      = {{INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY}},
  keywords     = {{General Medicine,Ecology,Evolution,Behavior and Systematics,Microbiology,Arcobacter,Arcobacteraceae,digital DNA-DNA hybridization,mucus,OrthoANlu,pig,MULTIPLEX PCR ASSAY,PATHOGEN ARCOBACTER,MINIMAL STANDARDS,CAMPYLOBACTER,IDENTIFICATION,TAXONOMY,CLASSIFICATION,HELICOBACTER,ALGORITHM,BUTZLERI}},
  language     = {{eng}},
  number       = {{11}},
  pages        = {{9}},
  title        = {{Arcobacter vandammei sp. nov., isolated from the rectal mucus of a healthy pig}},
  url          = {{http://doi.org/10.1099/ijsem.0.005113}},
  volume       = {{71}},
  year         = {{2021}},
}

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