Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica
- Author
- Guillaume Tahon (UGent) , Liesbeth Lebbe (UGent) and Anne Willems (UGent)
- Organization
- Project
-
- The Flemish contribution to the European Marine Biological Resource Centre (EMBRC-ERIC)
- Antarctic microbial biodiversity: the importance of geographical and ecological factors (AMBIO)
- Antarctic microbial biodiversity: the importance of geographical and ecological factors (AMBIO)
- Understanding biodiversity effects on the functioning of marine benthic ecosystems
- Abstract
- Between 2014 and 2016, 16 Gram-stain-negative, aerobic, rod-shaped and yellow-orange pigmented bacteria were isolated from exposed soils from the Utsteinen region, Sor Rondane Mountains, East Antarctica. Analysis of their 16S rRNA gene sequences revealed that the strains form a separate cluster in the genus Spirosoma, with Spirosoma rigui KCTC 12531(T) as its closest neighbour (97.8 % sequence similarity). Comparative genome analysis of two representative strains (i.e. R-68523(T) and R-68079) of the new group with the type strains of Spirosoma rigui (its closest neighbour) and Spirosoma linguale (type species of the genus), yielded average nucleotide identity values of 73.9-78.7%. Digital DNA-DNA reassociation values of the two strains and these type strains ranged from 20.3 to 22.0%. The predominant cellular fatty acids of the two novel strains were summed feature 3 (i.e. C-16:1 omega 7c and/or iso-C-15 2-OH), C-16:1 omega 5c, C-16:0 and iso-C-15:0. The new Spirosoma strains grew with 0-0.5 % (w/v) NaCl, at pH 6.5-8.0 and displayed optimum growth between 15 and 25 degrees C. Based on the results of phenotypic, genomic, phylogenetic and chemotaxonomic analyses, the new strains represent a novel species of the genus Spirosoma for which the name Spirosoma utsteinense sp. nov. is proposed. The type strain is R-68523(T) (=LMG 31447(T)=CECT 9925(T)).
- Keywords
- Spirosoma, Antarctica, ice-free soil, GENOME, DATABASE, PHOSPHATE
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8723810
- MLA
- Tahon, Guillaume, et al. “Spirosoma Utsteinense Sp. Nov. Isolated from Antarctic Ice-Free Soils from the Utsteinen Region, East Antarctica.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol. 71, no. 3, 2021, doi:10.1099/ijsem.0.004754.
- APA
- Tahon, G., Lebbe, L., & Willems, A. (2021). Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 71(3). https://doi.org/10.1099/ijsem.0.004754
- Chicago author-date
- Tahon, Guillaume, Liesbeth Lebbe, and Anne Willems. 2021. “Spirosoma Utsteinense Sp. Nov. Isolated from Antarctic Ice-Free Soils from the Utsteinen Region, East Antarctica.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71 (3). https://doi.org/10.1099/ijsem.0.004754.
- Chicago author-date (all authors)
- Tahon, Guillaume, Liesbeth Lebbe, and Anne Willems. 2021. “Spirosoma Utsteinense Sp. Nov. Isolated from Antarctic Ice-Free Soils from the Utsteinen Region, East Antarctica.” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 71 (3). doi:10.1099/ijsem.0.004754.
- Vancouver
- 1.Tahon G, Lebbe L, Willems A. Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. 2021;71(3).
- IEEE
- [1]G. Tahon, L. Lebbe, and A. Willems, “Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica,” INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol. 71, no. 3, 2021.
@article{8723810, abstract = {{Between 2014 and 2016, 16 Gram-stain-negative, aerobic, rod-shaped and yellow-orange pigmented bacteria were isolated from exposed soils from the Utsteinen region, Sor Rondane Mountains, East Antarctica. Analysis of their 16S rRNA gene sequences revealed that the strains form a separate cluster in the genus Spirosoma, with Spirosoma rigui KCTC 12531(T) as its closest neighbour (97.8 % sequence similarity). Comparative genome analysis of two representative strains (i.e. R-68523(T) and R-68079) of the new group with the type strains of Spirosoma rigui (its closest neighbour) and Spirosoma linguale (type species of the genus), yielded average nucleotide identity values of 73.9-78.7%. Digital DNA-DNA reassociation values of the two strains and these type strains ranged from 20.3 to 22.0%. The predominant cellular fatty acids of the two novel strains were summed feature 3 (i.e. C-16:1 omega 7c and/or iso-C-15 2-OH), C-16:1 omega 5c, C-16:0 and iso-C-15:0. The new Spirosoma strains grew with 0-0.5 % (w/v) NaCl, at pH 6.5-8.0 and displayed optimum growth between 15 and 25 degrees C. Based on the results of phenotypic, genomic, phylogenetic and chemotaxonomic analyses, the new strains represent a novel species of the genus Spirosoma for which the name Spirosoma utsteinense sp. nov. is proposed. The type strain is R-68523(T) (=LMG 31447(T)=CECT 9925(T)).}}, articleno = {{004754}}, author = {{Tahon, Guillaume and Lebbe, Liesbeth and Willems, Anne}}, issn = {{1466-5026}}, journal = {{INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY}}, keywords = {{Spirosoma,Antarctica,ice-free soil,GENOME,DATABASE,PHOSPHATE}}, language = {{eng}}, number = {{3}}, pages = {{12}}, title = {{Spirosoma utsteinense sp. nov. isolated from Antarctic ice-free soils from the Utsteinen region, East Antarctica}}, url = {{http://doi.org/10.1099/ijsem.0.004754}}, volume = {{71}}, year = {{2021}}, }
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