Complete genome sequence of Dyadobacter sp. 32, isolated from a culture of the freshwater diatom Cymbella microcephala
- Author
- Lachlan Dow, Kathryn Morrissey, Anne Willems (UGent) and Peter G. Kroth
- Organization
- Project
-
- ALFF (The Algal Microbiome: Friends and Foes)
- Abstract
- Bacteria have been shown to be involved in different species-specific interactions with eukaryotic algae such as diatoms, impacting important ecosystem processes. Recently, a strain assigned to Dyadobacter, named 'species 32', has been shown to be involved in a number of ecologically relevant diatom processes, such as biofilm formation or growth enhancement, depending on the diatom species. This bacterium was originally isolated from a culture of freshwater benthic diatoms that originated from an epilithic biofilm, in which both bacteria and diatoms coexist. A single complete circular chromosome of Dyadobacter sp. 32 was assembled with a length of 7,101,228 bp, containing 6062 protein coding genes and 3 rRNA operons. A number of interesting genetic features were found, such as a putative zeaxanthin biosynthetic gene cluster. A large number of polysaccharide utilizing gene clusters were also detected, along with genes potentially acquired from other bacteria through horizontal gene transfer, and genes previously identified in other algae-bacteria interactions. These data serve to increase our understanding of specific interactions within freshwater biofilms, and identify a number of gene targets with which to study the molecular basis of diatom-bacteria interactions.
- Keywords
- SP-NOV., BACTERIAL BIOFILMS, GEN. NOV., DATABASE, ECOLOGY, Biofilm, Zeaxanthin, Interspecies signaling, Phycosphere, Extracellular, polymeric substances
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Citation
Please use this url to cite or link to this publication: http://hdl.handle.net/1854/LU-8694885
- MLA
- Dow, Lachlan, et al. “Complete Genome Sequence of Dyadobacter Sp. 32, Isolated from a Culture of the Freshwater Diatom Cymbella Microcephala.” MARINE GENOMICS, vol. 52, 2020, doi:10.1016/j.margen.2019.100720.
- APA
- Dow, L., Morrissey, K., Willems, A., & Kroth, P. G. (2020). Complete genome sequence of Dyadobacter sp. 32, isolated from a culture of the freshwater diatom Cymbella microcephala. MARINE GENOMICS, 52. https://doi.org/10.1016/j.margen.2019.100720
- Chicago author-date
- Dow, Lachlan, Kathryn Morrissey, Anne Willems, and Peter G. Kroth. 2020. “Complete Genome Sequence of Dyadobacter Sp. 32, Isolated from a Culture of the Freshwater Diatom Cymbella Microcephala.” MARINE GENOMICS 52. https://doi.org/10.1016/j.margen.2019.100720.
- Chicago author-date (all authors)
- Dow, Lachlan, Kathryn Morrissey, Anne Willems, and Peter G. Kroth. 2020. “Complete Genome Sequence of Dyadobacter Sp. 32, Isolated from a Culture of the Freshwater Diatom Cymbella Microcephala.” MARINE GENOMICS 52. doi:10.1016/j.margen.2019.100720.
- Vancouver
- 1.Dow L, Morrissey K, Willems A, Kroth PG. Complete genome sequence of Dyadobacter sp. 32, isolated from a culture of the freshwater diatom Cymbella microcephala. MARINE GENOMICS. 2020;52.
- IEEE
- [1]L. Dow, K. Morrissey, A. Willems, and P. G. Kroth, “Complete genome sequence of Dyadobacter sp. 32, isolated from a culture of the freshwater diatom Cymbella microcephala,” MARINE GENOMICS, vol. 52, 2020.
@article{8694885,
abstract = {{Bacteria have been shown to be involved in different species-specific interactions with eukaryotic algae such as diatoms, impacting important ecosystem processes. Recently, a strain assigned to Dyadobacter, named 'species 32', has been shown to be involved in a number of ecologically relevant diatom processes, such as biofilm formation or growth enhancement, depending on the diatom species. This bacterium was originally isolated from a culture of freshwater benthic diatoms that originated from an epilithic biofilm, in which both bacteria and diatoms coexist. A single complete circular chromosome of Dyadobacter sp. 32 was assembled with a length of 7,101,228 bp, containing 6062 protein coding genes and 3 rRNA operons. A number of interesting genetic features were found, such as a putative zeaxanthin biosynthetic gene cluster. A large number of polysaccharide utilizing gene clusters were also detected, along with genes potentially acquired from other bacteria through horizontal gene transfer, and genes previously identified in other algae-bacteria interactions. These data serve to increase our understanding of specific interactions within freshwater biofilms, and identify a number of gene targets with which to study the molecular basis of diatom-bacteria interactions.}},
articleno = {{100720}},
author = {{Dow, Lachlan and Morrissey, Kathryn and Willems, Anne and Kroth, Peter G.}},
issn = {{1874-7787}},
journal = {{MARINE GENOMICS}},
keywords = {{SP-NOV.,BACTERIAL BIOFILMS,GEN. NOV.,DATABASE,ECOLOGY,Biofilm,Zeaxanthin,Interspecies signaling,Phycosphere,Extracellular,polymeric substances}},
language = {{eng}},
pages = {{4}},
title = {{Complete genome sequence of Dyadobacter sp. 32, isolated from a culture of the freshwater diatom Cymbella microcephala}},
url = {{http://dx.doi.org/10.1016/j.margen.2019.100720}},
volume = {{52}},
year = {{2020}},
}
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